data_5RKG # _model_server_result.job_id GFZnN4PaL9bYvb6RonA7PA _model_server_result.datetime_utc '2024-11-06 19:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKG # _exptl.entry_id 5RKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 140.14 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 1~{H}-pyrazole-4-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.11 _cell.angle_gamma 90 _cell.entry_id 5RKG _cell.length_a 82.107 _cell.length_b 27.082 _cell.length_c 55.694 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 N2 O2' _chem_comp.formula_weight 140.14 _chem_comp.id GOJ _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 1~{H}-pyrazole-4-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N N1 GOJ sing 129 n y N C4 GOJ doub 130 n y N1 C5 GOJ sing 131 n y C4 C3 GOJ sing 132 n y C5 C3 GOJ doub 133 n y C3 C2 GOJ sing 134 n n O C2 GOJ sing 135 n n O C1 GOJ sing 136 n n C2 O1 GOJ doub 137 n n C1 C GOJ sing 138 n n N1 H1 GOJ sing 139 n n C4 H2 GOJ sing 140 n n C5 H3 GOJ sing 141 n n C H4 GOJ sing 142 n n C H5 GOJ sing 143 n n C H6 GOJ sing 144 n n C1 H7 GOJ sing 145 n n C1 H8 GOJ sing 146 n n # _atom_sites.entry_id 5RKG _atom_sites.fract_transf_matrix[1][1] 0.012179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002172 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOJ A 1 1501 1501 GOJ LIG . C 3 HOH A 1 1601 89 HOH HOH . C 3 HOH A 2 1602 84 HOH HOH . C 3 HOH A 3 1603 7 HOH HOH . C 3 HOH A 4 1604 197 HOH HOH . C 3 HOH A 5 1605 141 HOH HOH . C 3 HOH A 6 1606 183 HOH HOH . C 3 HOH A 7 1607 85 HOH HOH . C 3 HOH A 8 1608 98 HOH HOH . C 3 HOH A 9 1609 151 HOH HOH . C 3 HOH A 10 1610 121 HOH HOH . C 3 HOH A 11 1611 17 HOH HOH . C 3 HOH A 12 1612 21 HOH HOH . C 3 HOH A 13 1613 195 HOH HOH . C 3 HOH A 14 1614 160 HOH HOH . C 3 HOH A 15 1615 33 HOH HOH . C 3 HOH A 16 1616 176 HOH HOH . C 3 HOH A 17 1617 124 HOH HOH . C 3 HOH A 18 1618 74 HOH HOH . C 3 HOH A 19 1619 10 HOH HOH . C 3 HOH A 20 1620 50 HOH HOH . C 3 HOH A 21 1621 83 HOH HOH . C 3 HOH A 22 1622 25 HOH HOH . C 3 HOH A 23 1623 10 HOH HOH . C 3 HOH A 24 1624 187 HOH HOH . C 3 HOH A 25 1625 24 HOH HOH . C 3 HOH A 26 1626 184 HOH HOH . C 3 HOH A 27 1627 101 HOH HOH . C 3 HOH A 28 1628 138 HOH HOH . C 3 HOH A 29 1629 16 HOH HOH . C 3 HOH A 30 1630 139 HOH HOH . C 3 HOH A 31 1631 130 HOH HOH . C 3 HOH A 32 1632 60 HOH HOH . C 3 HOH A 33 1633 9 HOH HOH . C 3 HOH A 34 1634 4 HOH HOH . C 3 HOH A 35 1635 140 HOH HOH . C 3 HOH A 36 1636 92 HOH HOH . C 3 HOH A 37 1637 62 HOH HOH . C 3 HOH A 38 1638 21 HOH HOH . C 3 HOH A 39 1639 13 HOH HOH . C 3 HOH A 40 1640 65 HOH HOH . C 3 HOH A 41 1641 31 HOH HOH . C 3 HOH A 42 1642 20 HOH HOH . C 3 HOH A 43 1643 12 HOH HOH . C 3 HOH A 44 1644 123 HOH HOH . C 3 HOH A 45 1645 28 HOH HOH . C 3 HOH A 46 1646 1 HOH HOH . C 3 HOH A 47 1647 36 HOH HOH . C 3 HOH A 48 1648 182 HOH HOH . C 3 HOH A 49 1649 70 HOH HOH . C 3 HOH A 50 1650 35 HOH HOH . C 3 HOH A 51 1651 94 HOH HOH . C 3 HOH A 52 1652 76 HOH HOH . C 3 HOH A 53 1653 154 HOH HOH . C 3 HOH A 54 1654 5 HOH HOH . C 3 HOH A 55 1655 56 HOH HOH . C 3 HOH A 56 1656 161 HOH HOH . C 3 HOH A 57 1657 113 HOH HOH . C 3 HOH A 58 1658 108 HOH HOH . C 3 HOH A 59 1659 158 HOH HOH . C 3 HOH A 60 1660 14 HOH HOH . C 3 HOH A 61 1661 5 HOH HOH . C 3 HOH A 62 1662 206 HOH HOH . C 3 HOH A 63 1663 55 HOH HOH . C 3 HOH A 64 1664 39 HOH HOH . C 3 HOH A 65 1665 45 HOH HOH . C 3 HOH A 66 1666 11 HOH HOH . C 3 HOH A 67 1667 59 HOH HOH . C 3 HOH A 68 1668 88 HOH HOH . C 3 HOH A 69 1669 8 HOH HOH . C 3 HOH A 70 1670 52 HOH HOH . C 3 HOH A 71 1671 44 HOH HOH . C 3 HOH A 72 1672 3 HOH HOH . C 3 HOH A 73 1673 32 HOH HOH . C 3 HOH A 74 1674 144 HOH HOH . C 3 HOH A 75 1675 191 HOH HOH . C 3 HOH A 76 1676 58 HOH HOH . C 3 HOH A 77 1677 23 HOH HOH . C 3 HOH A 78 1678 24 HOH HOH . C 3 HOH A 79 1679 54 HOH HOH . C 3 HOH A 80 1680 71 HOH HOH . C 3 HOH A 81 1681 29 HOH HOH . C 3 HOH A 82 1682 6 HOH HOH . C 3 HOH A 83 1683 64 HOH HOH . C 3 HOH A 84 1684 77 HOH HOH . C 3 HOH A 85 1685 63 HOH HOH . C 3 HOH A 86 1686 106 HOH HOH . C 3 HOH A 87 1687 22 HOH HOH . C 3 HOH A 88 1688 40 HOH HOH . C 3 HOH A 89 1689 82 HOH HOH . C 3 HOH A 90 1690 178 HOH HOH . C 3 HOH A 91 1691 69 HOH HOH . C 3 HOH A 92 1692 19 HOH HOH . C 3 HOH A 93 1693 23 HOH HOH . C 3 HOH A 94 1694 42 HOH HOH . C 3 HOH A 95 1695 27 HOH HOH . C 3 HOH A 96 1696 119 HOH HOH . C 3 HOH A 97 1697 167 HOH HOH . C 3 HOH A 98 1698 116 HOH HOH . C 3 HOH A 99 1699 105 HOH HOH . C 3 HOH A 100 1700 152 HOH HOH . C 3 HOH A 101 1701 43 HOH HOH . C 3 HOH A 102 1702 90 HOH HOH . C 3 HOH A 103 1703 157 HOH HOH . C 3 HOH A 104 1704 137 HOH HOH . C 3 HOH A 105 1705 127 HOH HOH . C 3 HOH A 106 1706 129 HOH HOH . C 3 HOH A 107 1707 37 HOH HOH . C 3 HOH A 108 1708 9 HOH HOH . C 3 HOH A 109 1709 72 HOH HOH . C 3 HOH A 110 1710 38 HOH HOH . C 3 HOH A 111 1711 80 HOH HOH . C 3 HOH A 112 1712 131 HOH HOH . C 3 HOH A 113 1713 81 HOH HOH . C 3 HOH A 114 1714 15 HOH HOH . C 3 HOH A 115 1715 26 HOH HOH . C 3 HOH A 116 1716 48 HOH HOH . C 3 HOH A 117 1717 49 HOH HOH . C 3 HOH A 118 1718 2 HOH HOH . C 3 HOH A 119 1719 173 HOH HOH . C 3 HOH A 120 1720 181 HOH HOH . C 3 HOH A 121 1721 125 HOH HOH . C 3 HOH A 122 1722 18 HOH HOH . C 3 HOH A 123 1723 22 HOH HOH . C 3 HOH A 124 1724 67 HOH HOH . C 3 HOH A 125 1725 53 HOH HOH . C 3 HOH A 126 1726 86 HOH HOH . C 3 HOH A 127 1727 30 HOH HOH . C 3 HOH A 128 1728 75 HOH HOH . C 3 HOH A 129 1729 13 HOH HOH . C 3 HOH A 130 1730 91 HOH HOH . C 3 HOH A 131 1731 34 HOH HOH . C 3 HOH A 132 1732 145 HOH HOH . C 3 HOH A 133 1733 165 HOH HOH . C 3 HOH A 134 1734 20 HOH HOH . C 3 HOH A 135 1735 57 HOH HOH . C 3 HOH A 136 1736 109 HOH HOH . C 3 HOH A 137 1737 126 HOH HOH . C 3 HOH A 138 1738 136 HOH HOH . C 3 HOH A 139 1739 146 HOH HOH . C 3 HOH A 140 1740 104 HOH HOH . C 3 HOH A 141 1741 175 HOH HOH . C 3 HOH A 142 1742 117 HOH HOH . C 3 HOH A 143 1743 96 HOH HOH . C 3 HOH A 144 1744 122 HOH HOH . C 3 HOH A 145 1745 174 HOH HOH . C 3 HOH A 146 1746 118 HOH HOH . C 3 HOH A 147 1747 155 HOH HOH . C 3 HOH A 148 1748 66 HOH HOH . C 3 HOH A 149 1749 166 HOH HOH . C 3 HOH A 150 1750 95 HOH HOH . C 3 HOH A 151 1751 120 HOH HOH . C 3 HOH A 152 1752 153 HOH HOH . C 3 HOH A 153 1753 16 HOH HOH . C 3 HOH A 154 1754 164 HOH HOH . C 3 HOH A 155 1755 31 HOH HOH . C 3 HOH A 156 1756 18 HOH HOH . C 3 HOH A 157 1757 1 HOH HOH . C 3 HOH A 158 1758 202 HOH HOH . C 3 HOH A 159 1759 198 HOH HOH . C 3 HOH A 160 1760 199 HOH HOH . C 3 HOH A 161 1761 29 HOH HOH . C 3 HOH A 162 1762 185 HOH HOH . C 3 HOH A 163 1763 8 HOH HOH . C 3 HOH A 164 1764 115 HOH HOH . C 3 HOH A 165 1765 3 HOH HOH . C 3 HOH A 166 1766 37 HOH HOH . C 3 HOH A 167 1767 11 HOH HOH . C 3 HOH A 168 1768 114 HOH HOH . C 3 HOH A 169 1769 2 HOH HOH . C 3 HOH A 170 1770 156 HOH HOH . C 3 HOH A 171 1771 186 HOH HOH . C 3 HOH A 172 1772 107 HOH HOH . C 3 HOH A 173 1773 61 HOH HOH . C 3 HOH A 174 1774 7 HOH HOH . C 3 HOH A 175 1775 32 HOH HOH . C 3 HOH A 176 1776 33 HOH HOH . C 3 HOH A 177 1777 30 HOH HOH . C 3 HOH A 178 1778 35 HOH HOH . C 3 HOH A 179 1779 28 HOH HOH . C 3 HOH A 180 1780 25 HOH HOH . C 3 HOH A 181 1781 51 HOH HOH . C 3 HOH A 182 1782 110 HOH HOH . C 3 HOH A 183 1783 4 HOH HOH . C 3 HOH A 184 1784 188 HOH HOH . C 3 HOH A 185 1785 170 HOH HOH . C 3 HOH A 186 1786 190 HOH HOH . C 3 HOH A 187 1787 112 HOH HOH . C 3 HOH A 188 1788 201 HOH HOH . C 3 HOH A 189 1789 78 HOH HOH . C 3 HOH A 190 1790 168 HOH HOH . C 3 HOH A 191 1791 102 HOH HOH . C 3 HOH A 192 1792 38 HOH HOH . C 3 HOH A 193 1793 193 HOH HOH . C 3 HOH A 194 1794 46 HOH HOH . C 3 HOH A 195 1795 68 HOH HOH . C 3 HOH A 196 1796 27 HOH HOH . C 3 HOH A 197 1797 103 HOH HOH . C 3 HOH A 198 1798 26 HOH HOH . C 3 HOH A 199 1799 34 HOH HOH . C 3 HOH A 200 1800 73 HOH HOH . C 3 HOH A 201 1801 6 HOH HOH . C 3 HOH A 202 1802 200 HOH HOH . C 3 HOH A 203 1803 15 HOH HOH . C 3 HOH A 204 1804 36 HOH HOH . C 3 HOH A 205 1805 87 HOH HOH . C 3 HOH A 206 1806 196 HOH HOH . C 3 HOH A 207 1807 19 HOH HOH . C 3 HOH A 208 1808 17 HOH HOH . C 3 HOH A 209 1809 111 HOH HOH . C 3 HOH A 210 1810 93 HOH HOH . C 3 HOH A 211 1811 192 HOH HOH . C 3 HOH A 212 1812 189 HOH HOH . C 3 HOH A 213 1813 97 HOH HOH . C 3 HOH A 214 1814 12 HOH HOH . C 3 HOH A 215 1815 79 HOH HOH . C 3 HOH A 216 1816 203 HOH HOH . C 3 HOH A 217 1817 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GOJ . . . B 2 -23.844 12.53 27.23 0.5 7.76 ? N1 GOJ 1501 A 1 HETATM 2 C C4 GOJ . . . B 2 -23.114 11.688 25.39 0.5 7.49 ? C4 GOJ 1501 A 1 HETATM 3 C C5 GOJ . . . B 2 -22.495 12.823 27.273 0.5 7.52 ? C5 GOJ 1501 A 1 HETATM 4 N N GOJ . . . B 2 -24.228 11.873 26.12 0.5 8.14 ? N GOJ 1501 A 1 HETATM 5 C C GOJ . . . B 2 -18.301 14.312 25.212 0.5 13.5 ? C GOJ 1501 A 1 HETATM 6 O O GOJ . . . B 2 -19.899 13.053 26.517 0.5 10.03 ? O GOJ 1501 A 1 HETATM 7 C C1 GOJ . . . B 2 -18.515 13.224 26.252 0.5 12.27 ? C1 GOJ 1501 A 1 HETATM 8 C C2 GOJ . . . B 2 -20.652 12.349 25.643 0.5 8.56 ? C2 GOJ 1501 A 1 HETATM 9 C C3 GOJ . . . B 2 -22.015 12.292 26.08 0.5 7.25 ? C3 GOJ 1501 A 1 HETATM 10 O O1 GOJ . . . B 2 -20.2 11.831 24.642 0.5 8.72 ? O1 GOJ 1501 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #