data_5RKJ # _model_server_result.job_id Vtv6lRwvMgMcTejjWfW78w _model_server_result.datetime_utc '2024-11-15 03:01:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKJ # _exptl.entry_id 5RKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.272 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1-ethyl-1H-pyrazol-4-yl)cyclopentanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.26 _cell.angle_gamma 90 _cell.entry_id 5RKJ _cell.length_a 81.61 _cell.length_b 27.05 _cell.length_c 55.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N3 O' _chem_comp.formula_weight 207.272 _chem_comp.id UWY _chem_comp.mon_nstd_flag . _chem_comp.name N-(1-ethyl-1H-pyrazol-4-yl)cyclopentanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 N2 UWY doub 358 n y C10 C3 UWY sing 359 n y N2 N UWY sing 360 n y N1 C3 UWY sing 361 n n N1 C4 UWY sing 362 n n C3 C2 UWY doub 363 n y C5 C4 UWY sing 364 n n C5 C9 UWY sing 365 n n C5 C6 UWY sing 366 n n N C2 UWY sing 367 n y N C1 UWY sing 368 n n C7 C8 UWY sing 369 n n C7 C6 UWY sing 370 n n C8 C9 UWY sing 371 n n C4 O UWY doub 372 n n C1 C UWY sing 373 n n N1 H1 UWY sing 374 n n C5 H2 UWY sing 375 n n C6 H3 UWY sing 376 n n C6 H4 UWY sing 377 n n C7 H5 UWY sing 378 n n C7 H6 UWY sing 379 n n C8 H7 UWY sing 380 n n C8 H8 UWY sing 381 n n C10 H9 UWY sing 382 n n C H10 UWY sing 383 n n C H11 UWY sing 384 n n C H12 UWY sing 385 n n C1 H13 UWY sing 386 n n C1 H14 UWY sing 387 n n C2 H15 UWY sing 388 n n C9 H16 UWY sing 389 n n C9 H17 UWY sing 390 n n # _atom_sites.entry_id 5RKJ _atom_sites.fract_transf_matrix[1][1] 0.012253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002218 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UWY A 1 1501 1501 UWY LIG . C 3 HOH A 1 1601 195 HOH HOH . C 3 HOH A 2 1602 41 HOH HOH . C 3 HOH A 3 1603 183 HOH HOH . C 3 HOH A 4 1604 141 HOH HOH . C 3 HOH A 5 1605 7 HOH HOH . C 3 HOH A 6 1606 89 HOH HOH . C 3 HOH A 7 1607 121 HOH HOH . C 3 HOH A 8 1608 187 HOH HOH . C 3 HOH A 9 1609 85 HOH HOH . C 3 HOH A 10 1610 17 HOH HOH . C 3 HOH A 11 1611 176 HOH HOH . C 3 HOH A 12 1612 172 HOH HOH . C 3 HOH A 13 1613 140 HOH HOH . C 3 HOH A 14 1614 159 HOH HOH . C 3 HOH A 15 1615 197 HOH HOH . C 3 HOH A 16 1616 160 HOH HOH . C 3 HOH A 17 1617 6 HOH HOH . C 3 HOH A 18 1618 10 HOH HOH . C 3 HOH A 19 1619 33 HOH HOH . C 3 HOH A 20 1620 50 HOH HOH . C 3 HOH A 21 1621 154 HOH HOH . C 3 HOH A 22 1622 16 HOH HOH . C 3 HOH A 23 1623 101 HOH HOH . C 3 HOH A 24 1624 144 HOH HOH . C 3 HOH A 25 1625 84 HOH HOH . C 3 HOH A 26 1626 65 HOH HOH . C 3 HOH A 27 1627 12 HOH HOH . C 3 HOH A 28 1628 45 HOH HOH . C 3 HOH A 29 1629 83 HOH HOH . C 3 HOH A 30 1630 151 HOH HOH . C 3 HOH A 31 1631 130 HOH HOH . C 3 HOH A 32 1632 124 HOH HOH . C 3 HOH A 33 1633 25 HOH HOH . C 3 HOH A 34 1634 60 HOH HOH . C 3 HOH A 35 1635 74 HOH HOH . C 3 HOH A 36 1636 36 HOH HOH . C 3 HOH A 37 1637 184 HOH HOH . C 3 HOH A 38 1638 167 HOH HOH . C 3 HOH A 39 1639 20 HOH HOH . C 3 HOH A 40 1640 9 HOH HOH . C 3 HOH A 41 1641 94 HOH HOH . C 3 HOH A 42 1642 55 HOH HOH . C 3 HOH A 43 1643 171 HOH HOH . C 3 HOH A 44 1644 92 HOH HOH . C 3 HOH A 45 1645 1 HOH HOH . C 3 HOH A 46 1646 76 HOH HOH . C 3 HOH A 47 1647 31 HOH HOH . C 3 HOH A 48 1648 59 HOH HOH . C 3 HOH A 49 1649 123 HOH HOH . C 3 HOH A 50 1650 162 HOH HOH . C 3 HOH A 51 1651 75 HOH HOH . C 3 HOH A 52 1652 5 HOH HOH . C 3 HOH A 53 1653 182 HOH HOH . C 3 HOH A 54 1654 106 HOH HOH . C 3 HOH A 55 1655 56 HOH HOH . C 3 HOH A 56 1656 35 HOH HOH . C 3 HOH A 57 1657 4 HOH HOH . C 3 HOH A 58 1658 19 HOH HOH . C 3 HOH A 59 1659 63 HOH HOH . C 3 HOH A 60 1660 6 HOH HOH . C 3 HOH A 61 1661 28 HOH HOH . C 3 HOH A 62 1662 70 HOH HOH . C 3 HOH A 63 1663 152 HOH HOH . C 3 HOH A 64 1664 4 HOH HOH . C 3 HOH A 65 1665 139 HOH HOH . C 3 HOH A 66 1666 64 HOH HOH . C 3 HOH A 67 1667 14 HOH HOH . C 3 HOH A 68 1668 147 HOH HOH . C 3 HOH A 69 1669 42 HOH HOH . C 3 HOH A 70 1670 52 HOH HOH . C 3 HOH A 71 1671 128 HOH HOH . C 3 HOH A 72 1672 129 HOH HOH . C 3 HOH A 73 1673 54 HOH HOH . C 3 HOH A 74 1674 39 HOH HOH . C 3 HOH A 75 1675 88 HOH HOH . C 3 HOH A 76 1676 119 HOH HOH . C 3 HOH A 77 1677 11 HOH HOH . C 3 HOH A 78 1678 13 HOH HOH . C 3 HOH A 79 1679 113 HOH HOH . C 3 HOH A 80 1680 108 HOH HOH . C 3 HOH A 81 1681 77 HOH HOH . C 3 HOH A 82 1682 1 HOH HOH . C 3 HOH A 83 1683 43 HOH HOH . C 3 HOH A 84 1684 2 HOH HOH . C 3 HOH A 85 1685 23 HOH HOH . C 3 HOH A 86 1686 86 HOH HOH . C 3 HOH A 87 1687 116 HOH HOH . C 3 HOH A 88 1688 69 HOH HOH . C 3 HOH A 89 1689 205 HOH HOH . C 3 HOH A 90 1690 81 HOH HOH . C 3 HOH A 91 1691 3 HOH HOH . C 3 HOH A 92 1692 24 HOH HOH . C 3 HOH A 93 1693 29 HOH HOH . C 3 HOH A 94 1694 40 HOH HOH . C 3 HOH A 95 1695 3 HOH HOH . C 3 HOH A 96 1696 177 HOH HOH . C 3 HOH A 97 1697 207 HOH HOH . C 3 HOH A 98 1698 178 HOH HOH . C 3 HOH A 99 1699 91 HOH HOH . C 3 HOH A 100 1700 62 HOH HOH . C 3 HOH A 101 1701 5 HOH HOH . C 3 HOH A 102 1702 44 HOH HOH . C 3 HOH A 103 1703 82 HOH HOH . C 3 HOH A 104 1704 71 HOH HOH . C 3 HOH A 105 1705 27 HOH HOH . C 3 HOH A 106 1706 136 HOH HOH . C 3 HOH A 107 1707 38 HOH HOH . C 3 HOH A 108 1708 67 HOH HOH . C 3 HOH A 109 1709 191 HOH HOH . C 3 HOH A 110 1710 138 HOH HOH . C 3 HOH A 111 1711 105 HOH HOH . C 3 HOH A 112 1712 157 HOH HOH . C 3 HOH A 113 1713 19 HOH HOH . C 3 HOH A 114 1714 131 HOH HOH . C 3 HOH A 115 1715 90 HOH HOH . C 3 HOH A 116 1716 15 HOH HOH . C 3 HOH A 117 1717 125 HOH HOH . C 3 HOH A 118 1718 48 HOH HOH . C 3 HOH A 119 1719 37 HOH HOH . C 3 HOH A 120 1720 109 HOH HOH . C 3 HOH A 121 1721 80 HOH HOH . C 3 HOH A 122 1722 137 HOH HOH . C 3 HOH A 123 1723 49 HOH HOH . C 3 HOH A 124 1724 122 HOH HOH . C 3 HOH A 125 1725 127 HOH HOH . C 3 HOH A 126 1726 22 HOH HOH . C 3 HOH A 127 1727 72 HOH HOH . C 3 HOH A 128 1728 57 HOH HOH . C 3 HOH A 129 1729 145 HOH HOH . C 3 HOH A 130 1730 14 HOH HOH . C 3 HOH A 131 1731 31 HOH HOH . C 3 HOH A 132 1732 2 HOH HOH . C 3 HOH A 133 1733 53 HOH HOH . C 3 HOH A 134 1734 95 HOH HOH . C 3 HOH A 135 1735 134 HOH HOH . C 3 HOH A 136 1736 25 HOH HOH . C 3 HOH A 137 1737 168 HOH HOH . C 3 HOH A 138 1738 8 HOH HOH . C 3 HOH A 139 1739 13 HOH HOH . C 3 HOH A 140 1740 150 HOH HOH . C 3 HOH A 141 1741 96 HOH HOH . C 3 HOH A 142 1742 34 HOH HOH . C 3 HOH A 143 1743 175 HOH HOH . C 3 HOH A 144 1744 35 HOH HOH . C 3 HOH A 145 1745 174 HOH HOH . C 3 HOH A 146 1746 165 HOH HOH . C 3 HOH A 147 1747 47 HOH HOH . C 3 HOH A 148 1748 32 HOH HOH . C 3 HOH A 149 1749 118 HOH HOH . C 3 HOH A 150 1750 120 HOH HOH . C 3 HOH A 151 1751 34 HOH HOH . C 3 HOH A 152 1752 173 HOH HOH . C 3 HOH A 153 1753 153 HOH HOH . C 3 HOH A 154 1754 166 HOH HOH . C 3 HOH A 155 1755 7 HOH HOH . C 3 HOH A 156 1756 158 HOH HOH . C 3 HOH A 157 1757 117 HOH HOH . C 3 HOH A 158 1758 26 HOH HOH . C 3 HOH A 159 1759 164 HOH HOH . C 3 HOH A 160 1760 22 HOH HOH . C 3 HOH A 161 1761 12 HOH HOH . C 3 HOH A 162 1762 199 HOH HOH . C 3 HOH A 163 1763 133 HOH HOH . C 3 HOH A 164 1764 126 HOH HOH . C 3 HOH A 165 1765 10 HOH HOH . C 3 HOH A 166 1766 8 HOH HOH . C 3 HOH A 167 1767 115 HOH HOH . C 3 HOH A 168 1768 185 HOH HOH . C 3 HOH A 169 1769 202 HOH HOH . C 3 HOH A 170 1770 107 HOH HOH . C 3 HOH A 171 1771 17 HOH HOH . C 3 HOH A 172 1772 114 HOH HOH . C 3 HOH A 173 1773 30 HOH HOH . C 3 HOH A 174 1774 28 HOH HOH . C 3 HOH A 175 1775 36 HOH HOH . C 3 HOH A 176 1776 186 HOH HOH . C 3 HOH A 177 1777 112 HOH HOH . C 3 HOH A 178 1778 198 HOH HOH . C 3 HOH A 179 1779 33 HOH HOH . C 3 HOH A 180 1780 51 HOH HOH . C 3 HOH A 181 1781 61 HOH HOH . C 3 HOH A 182 1782 11 HOH HOH . C 3 HOH A 183 1783 156 HOH HOH . C 3 HOH A 184 1784 104 HOH HOH . C 3 HOH A 185 1785 170 HOH HOH . C 3 HOH A 186 1786 190 HOH HOH . C 3 HOH A 187 1787 110 HOH HOH . C 3 HOH A 188 1788 188 HOH HOH . C 3 HOH A 189 1789 30 HOH HOH . C 3 HOH A 190 1790 27 HOH HOH . C 3 HOH A 191 1791 78 HOH HOH . C 3 HOH A 192 1792 201 HOH HOH . C 3 HOH A 193 1793 103 HOH HOH . C 3 HOH A 194 1794 68 HOH HOH . C 3 HOH A 195 1795 46 HOH HOH . C 3 HOH A 196 1796 102 HOH HOH . C 3 HOH A 197 1797 29 HOH HOH . C 3 HOH A 198 1798 73 HOH HOH . C 3 HOH A 199 1799 18 HOH HOH . C 3 HOH A 200 1800 209 HOH HOH . C 3 HOH A 201 1801 23 HOH HOH . C 3 HOH A 202 1802 196 HOH HOH . C 3 HOH A 203 1803 37 HOH HOH . C 3 HOH A 204 1804 21 HOH HOH . C 3 HOH A 205 1805 200 HOH HOH . C 3 HOH A 206 1806 20 HOH HOH . C 3 HOH A 207 1807 111 HOH HOH . C 3 HOH A 208 1808 15 HOH HOH . C 3 HOH A 209 1809 16 HOH HOH . C 3 HOH A 210 1810 87 HOH HOH . C 3 HOH A 211 1811 97 HOH HOH . C 3 HOH A 212 1812 189 HOH HOH . C 3 HOH A 213 1813 79 HOH HOH . C 3 HOH A 214 1814 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UWY . . . B 2 -16.937 17.04 26.032 0.48 19.45 ? N1 UWY 1501 A 1 HETATM 2 C C4 UWY . . . B 2 -16.048 17.609 26.965 0.48 20.32 ? C4 UWY 1501 A 1 HETATM 3 C C5 UWY . . . B 2 -15.428 18.937 26.507 0.48 22.56 ? C5 UWY 1501 A 1 HETATM 4 C C6 UWY . . . B 2 -14.025 19.104 27.091 0.48 23.57 ? C6 UWY 1501 A 1 HETATM 5 C C7 UWY . . . B 2 -13.753 20.615 26.954 0.48 23.82 ? C7 UWY 1501 A 1 HETATM 6 C C8 UWY . . . B 2 -15.139 21.301 26.959 0.48 23.92 ? C8 UWY 1501 A 1 HETATM 7 C C10 UWY . . . B 2 -18.326 15.259 25.03 0.48 19.47 ? C10 UWY 1501 A 1 HETATM 8 N N UWY . . . B 2 -18.667 13.976 26.708 0.48 19.34 ? N UWY 1501 A 1 HETATM 9 C C UWY . . . B 2 -20.679 13.137 27.735 0.48 19.23 ? C UWY 1501 A 1 HETATM 10 O O UWY . . . B 2 -15.734 17.056 28.011 0.48 18.56 ? O UWY 1501 A 1 HETATM 11 C C1 UWY . . . B 2 -19.214 12.849 27.449 0.48 19.08 ? C1 UWY 1501 A 1 HETATM 12 C C2 UWY . . . B 2 -17.889 15.009 27.227 0.48 19.84 ? C2 UWY 1501 A 1 HETATM 13 C C3 UWY . . . B 2 -17.665 15.873 26.144 0.48 19.47 ? C3 UWY 1501 A 1 HETATM 14 C C9 UWY . . . B 2 -16.169 20.167 27.045 0.48 23.45 ? C9 UWY 1501 A 1 HETATM 15 N N2 UWY . . . B 2 -18.927 14.111 25.403 0.48 19.41 ? N2 UWY 1501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #