data_5RKM # _model_server_result.job_id d44p1ySc5oA5v4yedz6o8Q _model_server_result.datetime_utc '2024-11-22 16:54:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKM # _exptl.entry_id 5RKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[(3-fluoropyridin-2-yl)(methyl)amino]propan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.6 _cell.angle_gamma 90 _cell.entry_id 5RKM _cell.length_a 81.49 _cell.length_b 27.03 _cell.length_c 55.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 F N2 O' _chem_comp.formula_weight 184.211 _chem_comp.id O0V _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[(3-fluoropyridin-2-yl)(methyl)amino]propan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 O0V doub 237 n y C6 C5 O0V sing 238 n y C7 C8 O0V sing 239 n y C5 N1 O0V doub 240 n y C8 F O0V sing 241 n n C8 C4 O0V doub 242 n y N1 C4 O0V sing 243 n y C4 N O0V sing 244 n n N C1 O0V sing 245 n n N C3 O0V sing 246 n n C1 C2 O0V sing 247 n n C1 C O0V sing 248 n n C2 O O0V sing 249 n n C5 H1 O0V sing 250 n n C6 H2 O0V sing 251 n n C7 H3 O0V sing 252 n n C H4 O0V sing 253 n n C H5 O0V sing 254 n n C H6 O0V sing 255 n n O H7 O0V sing 256 n n C1 H8 O0V sing 257 n n C2 H9 O0V sing 258 n n C2 H10 O0V sing 259 n n C3 H11 O0V sing 260 n n C3 H12 O0V sing 261 n n C3 H13 O0V sing 262 n n # _atom_sites.entry_id 5RKM _atom_sites.fract_transf_matrix[1][1] 0.012271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002297 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O0V A 1 1501 1501 O0V LIG . C 3 HOH A 1 1601 7 HOH HOH . C 3 HOH A 2 1602 89 HOH HOH . C 3 HOH A 3 1603 128 HOH HOH . C 3 HOH A 4 1604 183 HOH HOH . C 3 HOH A 5 1605 85 HOH HOH . C 3 HOH A 6 1606 197 HOH HOH . C 3 HOH A 7 1607 98 HOH HOH . C 3 HOH A 8 1608 141 HOH HOH . C 3 HOH A 9 1609 187 HOH HOH . C 3 HOH A 10 1610 151 HOH HOH . C 3 HOH A 11 1611 121 HOH HOH . C 3 HOH A 12 1612 171 HOH HOH . C 3 HOH A 13 1613 84 HOH HOH . C 3 HOH A 14 1614 10 HOH HOH . C 3 HOH A 15 1615 124 HOH HOH . C 3 HOH A 16 1616 47 HOH HOH . C 3 HOH A 17 1617 176 HOH HOH . C 3 HOH A 18 1618 19 HOH HOH . C 3 HOH A 19 1619 11 HOH HOH . C 3 HOH A 20 1620 74 HOH HOH . C 3 HOH A 21 1621 50 HOH HOH . C 3 HOH A 22 1622 60 HOH HOH . C 3 HOH A 23 1623 33 HOH HOH . C 3 HOH A 24 1624 3 HOH HOH . C 3 HOH A 25 1625 159 HOH HOH . C 3 HOH A 26 1626 101 HOH HOH . C 3 HOH A 27 1627 160 HOH HOH . C 3 HOH A 28 1628 140 HOH HOH . C 3 HOH A 29 1629 65 HOH HOH . C 3 HOH A 30 1630 25 HOH HOH . C 3 HOH A 31 1631 135 HOH HOH . C 3 HOH A 32 1632 94 HOH HOH . C 3 HOH A 33 1633 14 HOH HOH . C 3 HOH A 34 1634 36 HOH HOH . C 3 HOH A 35 1635 31 HOH HOH . C 3 HOH A 36 1636 16 HOH HOH . C 3 HOH A 37 1637 12 HOH HOH . C 3 HOH A 38 1638 194 HOH HOH . C 3 HOH A 39 1639 83 HOH HOH . C 3 HOH A 40 1640 139 HOH HOH . C 3 HOH A 41 1641 9 HOH HOH . C 3 HOH A 42 1642 130 HOH HOH . C 3 HOH A 43 1643 184 HOH HOH . C 3 HOH A 44 1644 179 HOH HOH . C 3 HOH A 45 1645 70 HOH HOH . C 3 HOH A 46 1646 54 HOH HOH . C 3 HOH A 47 1647 35 HOH HOH . C 3 HOH A 48 1648 20 HOH HOH . C 3 HOH A 49 1649 66 HOH HOH . C 3 HOH A 50 1650 92 HOH HOH . C 3 HOH A 51 1651 108 HOH HOH . C 3 HOH A 52 1652 1 HOH HOH . C 3 HOH A 53 1653 4 HOH HOH . C 3 HOH A 54 1654 59 HOH HOH . C 3 HOH A 55 1655 182 HOH HOH . C 3 HOH A 56 1656 62 HOH HOH . C 3 HOH A 57 1657 28 HOH HOH . C 3 HOH A 58 1658 167 HOH HOH . C 3 HOH A 59 1659 154 HOH HOH . C 3 HOH A 60 1660 3 HOH HOH . C 3 HOH A 61 1661 75 HOH HOH . C 3 HOH A 62 1662 106 HOH HOH . C 3 HOH A 63 1663 22 HOH HOH . C 3 HOH A 64 1664 76 HOH HOH . C 3 HOH A 65 1665 10 HOH HOH . C 3 HOH A 66 1666 56 HOH HOH . C 3 HOH A 67 1667 21 HOH HOH . C 3 HOH A 68 1668 77 HOH HOH . C 3 HOH A 69 1669 26 HOH HOH . C 3 HOH A 70 1670 45 HOH HOH . C 3 HOH A 71 1671 23 HOH HOH . C 3 HOH A 72 1672 5 HOH HOH . C 3 HOH A 73 1673 64 HOH HOH . C 3 HOH A 74 1674 28 HOH HOH . C 3 HOH A 75 1675 6 HOH HOH . C 3 HOH A 76 1676 82 HOH HOH . C 3 HOH A 77 1677 39 HOH HOH . C 3 HOH A 78 1678 42 HOH HOH . C 3 HOH A 79 1679 161 HOH HOH . C 3 HOH A 80 1680 23 HOH HOH . C 3 HOH A 81 1681 137 HOH HOH . C 3 HOH A 82 1682 55 HOH HOH . C 3 HOH A 83 1683 27 HOH HOH . C 3 HOH A 84 1684 180 HOH HOH . C 3 HOH A 85 1685 43 HOH HOH . C 3 HOH A 86 1686 69 HOH HOH . C 3 HOH A 87 1687 63 HOH HOH . C 3 HOH A 88 1688 52 HOH HOH . C 3 HOH A 89 1689 157 HOH HOH . C 3 HOH A 90 1690 181 HOH HOH . C 3 HOH A 91 1691 123 HOH HOH . C 3 HOH A 92 1692 19 HOH HOH . C 3 HOH A 93 1693 177 HOH HOH . C 3 HOH A 94 1694 29 HOH HOH . C 3 HOH A 95 1695 144 HOH HOH . C 3 HOH A 96 1696 67 HOH HOH . C 3 HOH A 97 1697 71 HOH HOH . C 3 HOH A 98 1698 15 HOH HOH . C 3 HOH A 99 1699 24 HOH HOH . C 3 HOH A 100 1700 207 HOH HOH . C 3 HOH A 101 1701 113 HOH HOH . C 3 HOH A 102 1702 20 HOH HOH . C 3 HOH A 103 1703 96 HOH HOH . C 3 HOH A 104 1704 116 HOH HOH . C 3 HOH A 105 1705 90 HOH HOH . C 3 HOH A 106 1706 58 HOH HOH . C 3 HOH A 107 1707 122 HOH HOH . C 3 HOH A 108 1708 136 HOH HOH . C 3 HOH A 109 1709 91 HOH HOH . C 3 HOH A 110 1710 44 HOH HOH . C 3 HOH A 111 1711 37 HOH HOH . C 3 HOH A 112 1712 21 HOH HOH . C 3 HOH A 113 1713 18 HOH HOH . C 3 HOH A 114 1714 191 HOH HOH . C 3 HOH A 115 1715 48 HOH HOH . C 3 HOH A 116 1716 2 HOH HOH . C 3 HOH A 117 1717 40 HOH HOH . C 3 HOH A 118 1718 86 HOH HOH . C 3 HOH A 119 1719 178 HOH HOH . C 3 HOH A 120 1720 105 HOH HOH . C 3 HOH A 121 1721 119 HOH HOH . C 3 HOH A 122 1722 24 HOH HOH . C 3 HOH A 123 1723 57 HOH HOH . C 3 HOH A 124 1724 32 HOH HOH . C 3 HOH A 125 1725 138 HOH HOH . C 3 HOH A 126 1726 53 HOH HOH . C 3 HOH A 127 1727 49 HOH HOH . C 3 HOH A 128 1728 88 HOH HOH . C 3 HOH A 129 1729 38 HOH HOH . C 3 HOH A 130 1730 174 HOH HOH . C 3 HOH A 131 1731 129 HOH HOH . C 3 HOH A 132 1732 81 HOH HOH . C 3 HOH A 133 1733 125 HOH HOH . C 3 HOH A 134 1734 22 HOH HOH . C 3 HOH A 135 1735 127 HOH HOH . C 3 HOH A 136 1736 2 HOH HOH . C 3 HOH A 137 1737 80 HOH HOH . C 3 HOH A 138 1738 175 HOH HOH . C 3 HOH A 139 1739 152 HOH HOH . C 3 HOH A 140 1740 120 HOH HOH . C 3 HOH A 141 1741 145 HOH HOH . C 3 HOH A 142 1742 72 HOH HOH . C 3 HOH A 143 1743 165 HOH HOH . C 3 HOH A 144 1744 34 HOH HOH . C 3 HOH A 145 1745 109 HOH HOH . C 3 HOH A 146 1746 146 HOH HOH . C 3 HOH A 147 1747 95 HOH HOH . C 3 HOH A 148 1748 13 HOH HOH . C 3 HOH A 149 1749 93 HOH HOH . C 3 HOH A 150 1750 117 HOH HOH . C 3 HOH A 151 1751 118 HOH HOH . C 3 HOH A 152 1752 131 HOH HOH . C 3 HOH A 153 1753 126 HOH HOH . C 3 HOH A 154 1754 158 HOH HOH . C 3 HOH A 155 1755 153 HOH HOH . C 3 HOH A 156 1756 150 HOH HOH . C 3 HOH A 157 1757 133 HOH HOH . C 3 HOH A 158 1758 204 HOH HOH . C 3 HOH A 159 1759 199 HOH HOH . C 3 HOH A 160 1760 13 HOH HOH . C 3 HOH A 161 1761 27 HOH HOH . C 3 HOH A 162 1762 166 HOH HOH . C 3 HOH A 163 1763 115 HOH HOH . C 3 HOH A 164 1764 15 HOH HOH . C 3 HOH A 165 1765 164 HOH HOH . C 3 HOH A 166 1766 26 HOH HOH . C 3 HOH A 167 1767 8 HOH HOH . C 3 HOH A 168 1768 185 HOH HOH . C 3 HOH A 169 1769 114 HOH HOH . C 3 HOH A 170 1770 8 HOH HOH . C 3 HOH A 171 1771 30 HOH HOH . C 3 HOH A 172 1772 202 HOH HOH . C 3 HOH A 173 1773 107 HOH HOH . C 3 HOH A 174 1774 104 HOH HOH . C 3 HOH A 175 1775 6 HOH HOH . C 3 HOH A 176 1776 25 HOH HOH . C 3 HOH A 177 1777 186 HOH HOH . C 3 HOH A 178 1778 112 HOH HOH . C 3 HOH A 179 1779 198 HOH HOH . C 3 HOH A 180 1780 61 HOH HOH . C 3 HOH A 181 1781 18 HOH HOH . C 3 HOH A 182 1782 156 HOH HOH . C 3 HOH A 183 1783 51 HOH HOH . C 3 HOH A 184 1784 188 HOH HOH . C 3 HOH A 185 1785 5 HOH HOH . C 3 HOH A 186 1786 4 HOH HOH . C 3 HOH A 187 1787 190 HOH HOH . C 3 HOH A 188 1788 168 HOH HOH . C 3 HOH A 189 1789 41 HOH HOH . C 3 HOH A 190 1790 11 HOH HOH . C 3 HOH A 191 1791 110 HOH HOH . C 3 HOH A 192 1792 193 HOH HOH . C 3 HOH A 193 1793 9 HOH HOH . C 3 HOH A 194 1794 7 HOH HOH . C 3 HOH A 195 1795 170 HOH HOH . C 3 HOH A 196 1796 102 HOH HOH . C 3 HOH A 197 1797 201 HOH HOH . C 3 HOH A 198 1798 31 HOH HOH . C 3 HOH A 199 1799 205 HOH HOH . C 3 HOH A 200 1800 103 HOH HOH . C 3 HOH A 201 1801 46 HOH HOH . C 3 HOH A 202 1802 68 HOH HOH . C 3 HOH A 203 1803 78 HOH HOH . C 3 HOH A 204 1804 17 HOH HOH . C 3 HOH A 205 1805 73 HOH HOH . C 3 HOH A 206 1806 1 HOH HOH . C 3 HOH A 207 1807 99 HOH HOH . C 3 HOH A 208 1808 16 HOH HOH . C 3 HOH A 209 1809 149 HOH HOH . C 3 HOH A 210 1810 14 HOH HOH . C 3 HOH A 211 1811 12 HOH HOH . C 3 HOH A 212 1812 29 HOH HOH . C 3 HOH A 213 1813 196 HOH HOH . C 3 HOH A 214 1814 169 HOH HOH . C 3 HOH A 215 1815 189 HOH HOH . C 3 HOH A 216 1816 148 HOH HOH . C 3 HOH A 217 1817 111 HOH HOH . C 3 HOH A 218 1818 30 HOH HOH . C 3 HOH A 219 1819 97 HOH HOH . C 3 HOH A 220 1820 192 HOH HOH . C 3 HOH A 221 1821 87 HOH HOH . C 3 HOH A 222 1822 79 HOH HOH . C 3 HOH A 223 1823 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O0V . . . B 2 -21.789 11.73 24.876 0.66 14.37 ? N1 O0V 1501 A 1 HETATM 2 C C4 O0V . . . B 2 -21.295 12.548 25.904 0.66 15.87 ? C4 O0V 1501 A 1 HETATM 3 C C5 O0V . . . B 2 -23.048 11.396 24.894 0.66 14.55 ? C5 O0V 1501 A 1 HETATM 4 C C6 O0V . . . B 2 -23.953 11.798 25.897 0.66 14.62 ? C6 O0V 1501 A 1 HETATM 5 C C7 O0V . . . B 2 -23.481 12.54 26.966 0.66 15.41 ? C7 O0V 1501 A 1 HETATM 6 C C8 O0V . . . B 2 -22.139 12.93 26.986 0.66 16.48 ? C8 O0V 1501 A 1 HETATM 7 N N O0V . . . B 2 -19.963 13.145 25.771 0.66 16.18 ? N O0V 1501 A 1 HETATM 8 C C O0V . . . B 2 -18.171 13.748 24.108 0.66 15.96 ? C O0V 1501 A 1 HETATM 9 O O O0V . . . B 2 -17.841 10.58 24.014 0.66 11.55 ? O O0V 1501 A 1 HETATM 10 C C1 O0V . . . B 2 -19.121 12.656 24.617 0.66 15.62 ? C1 O0V 1501 A 1 HETATM 11 C C2 O0V . . . B 2 -18.423 11.325 25.075 0.66 14.73 ? C2 O0V 1501 A 1 HETATM 12 C C3 O0V . . . B 2 -19.204 13.425 27.046 0.66 16.58 ? C3 O0V 1501 A 1 HETATM 13 F F O0V . . . B 2 -21.745 13.648 28.029 0.66 18.23 ? F O0V 1501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #