data_5RKN # _model_server_result.job_id 9AhFwWL0iUTtl0a3Jb7plA _model_server_result.datetime_utc '2024-11-24 21:15:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKN # _exptl.entry_id 5RKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.246 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1-ethyl-1H-pyrazol-4-yl)cyclobutanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.35 _cell.angle_gamma 90 _cell.entry_id 5RKN _cell.length_a 81.62 _cell.length_b 27.05 _cell.length_c 55.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N3 O' _chem_comp.formula_weight 193.246 _chem_comp.id NUA _chem_comp.mon_nstd_flag . _chem_comp.name N-(1-ethyl-1H-pyrazol-4-yl)cyclobutanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C6 NUA sing 237 n n C9 C8 NUA sing 238 n n C6 C5 NUA sing 239 n n C6 C7 NUA sing 240 n n C8 C7 NUA sing 241 n n N2 C5 NUA sing 242 n n N2 C4 NUA sing 243 n n C10 C4 NUA sing 244 n y C10 N3 NUA doub 245 n y C5 O1 NUA doub 246 n n C4 C3 NUA doub 247 n y N3 N1 NUA sing 248 n y C3 N1 NUA sing 249 n y N1 C2 NUA sing 250 n n C2 C1 NUA sing 251 n n C6 H1 NUA sing 252 n n C7 H2 NUA sing 253 n n C7 H3 NUA sing 254 n n C8 H4 NUA sing 255 n n C8 H5 NUA sing 256 n n C10 H6 NUA sing 257 n n C1 H7 NUA sing 258 n n C1 H8 NUA sing 259 n n C1 H9 NUA sing 260 n n C2 H10 NUA sing 261 n n C2 H11 NUA sing 262 n n C3 H12 NUA sing 263 n n C9 H13 NUA sing 264 n n C9 H14 NUA sing 265 n n N2 H15 NUA sing 266 n n # _atom_sites.entry_id 5RKN _atom_sites.fract_transf_matrix[1][1] 0.012252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NUA A 1 1501 1501 NUA LIG . C 3 HOH A 1 1601 7 HOH HOH . C 3 HOH A 2 1602 8 HOH HOH . C 3 HOH A 3 1603 85 HOH HOH . C 3 HOH A 4 1604 140 HOH HOH . C 3 HOH A 5 1605 183 HOH HOH . C 3 HOH A 6 1606 121 HOH HOH . C 3 HOH A 7 1607 89 HOH HOH . C 3 HOH A 8 1608 151 HOH HOH . C 3 HOH A 9 1609 162 HOH HOH . C 3 HOH A 10 1610 197 HOH HOH . C 3 HOH A 11 1611 47 HOH HOH . C 3 HOH A 12 1612 98 HOH HOH . C 3 HOH A 13 1613 74 HOH HOH . C 3 HOH A 14 1614 144 HOH HOH . C 3 HOH A 15 1615 176 HOH HOH . C 3 HOH A 16 1616 66 HOH HOH . C 3 HOH A 17 1617 17 HOH HOH . C 3 HOH A 18 1618 154 HOH HOH . C 3 HOH A 19 1619 187 HOH HOH . C 3 HOH A 20 1620 65 HOH HOH . C 3 HOH A 21 1621 33 HOH HOH . C 3 HOH A 22 1622 160 HOH HOH . C 3 HOH A 23 1623 124 HOH HOH . C 3 HOH A 24 1624 204 HOH HOH . C 3 HOH A 25 1625 83 HOH HOH . C 3 HOH A 26 1626 12 HOH HOH . C 3 HOH A 27 1627 41 HOH HOH . C 3 HOH A 28 1628 10 HOH HOH . C 3 HOH A 29 1629 184 HOH HOH . C 3 HOH A 30 1630 50 HOH HOH . C 3 HOH A 31 1631 101 HOH HOH . C 3 HOH A 32 1632 128 HOH HOH . C 3 HOH A 33 1633 20 HOH HOH . C 3 HOH A 34 1634 25 HOH HOH . C 3 HOH A 35 1635 159 HOH HOH . C 3 HOH A 36 1636 31 HOH HOH . C 3 HOH A 37 1637 14 HOH HOH . C 3 HOH A 38 1638 36 HOH HOH . C 3 HOH A 39 1639 171 HOH HOH . C 3 HOH A 40 1640 84 HOH HOH . C 3 HOH A 41 1641 16 HOH HOH . C 3 HOH A 42 1642 75 HOH HOH . C 3 HOH A 43 1643 4 HOH HOH . C 3 HOH A 44 1644 94 HOH HOH . C 3 HOH A 45 1645 167 HOH HOH . C 3 HOH A 46 1646 55 HOH HOH . C 3 HOH A 47 1647 1 HOH HOH . C 3 HOH A 48 1648 141 HOH HOH . C 3 HOH A 49 1649 123 HOH HOH . C 3 HOH A 50 1650 27 HOH HOH . C 3 HOH A 51 1651 108 HOH HOH . C 3 HOH A 52 1652 64 HOH HOH . C 3 HOH A 53 1653 182 HOH HOH . C 3 HOH A 54 1654 9 HOH HOH . C 3 HOH A 55 1655 26 HOH HOH . C 3 HOH A 56 1656 207 HOH HOH . C 3 HOH A 57 1657 7 HOH HOH . C 3 HOH A 58 1658 54 HOH HOH . C 3 HOH A 59 1659 5 HOH HOH . C 3 HOH A 60 1660 59 HOH HOH . C 3 HOH A 61 1661 92 HOH HOH . C 3 HOH A 62 1662 77 HOH HOH . C 3 HOH A 63 1663 145 HOH HOH . C 3 HOH A 64 1664 130 HOH HOH . C 3 HOH A 65 1665 60 HOH HOH . C 3 HOH A 66 1666 139 HOH HOH . C 3 HOH A 67 1667 76 HOH HOH . C 3 HOH A 68 1668 35 HOH HOH . C 3 HOH A 69 1669 45 HOH HOH . C 3 HOH A 70 1670 3 HOH HOH . C 3 HOH A 71 1671 39 HOH HOH . C 3 HOH A 72 1672 147 HOH HOH . C 3 HOH A 73 1673 211 HOH HOH . C 3 HOH A 74 1674 82 HOH HOH . C 3 HOH A 75 1675 56 HOH HOH . C 3 HOH A 76 1676 157 HOH HOH . C 3 HOH A 77 1677 70 HOH HOH . C 3 HOH A 78 1678 119 HOH HOH . C 3 HOH A 79 1679 132 HOH HOH . C 3 HOH A 80 1680 62 HOH HOH . C 3 HOH A 81 1681 138 HOH HOH . C 3 HOH A 82 1682 69 HOH HOH . C 3 HOH A 83 1683 91 HOH HOH . C 3 HOH A 84 1684 11 HOH HOH . C 3 HOH A 85 1685 131 HOH HOH . C 3 HOH A 86 1686 21 HOH HOH . C 3 HOH A 87 1687 63 HOH HOH . C 3 HOH A 88 1688 161 HOH HOH . C 3 HOH A 89 1689 28 HOH HOH . C 3 HOH A 90 1690 19 HOH HOH . C 3 HOH A 91 1691 6 HOH HOH . C 3 HOH A 92 1692 71 HOH HOH . C 3 HOH A 93 1693 52 HOH HOH . C 3 HOH A 94 1694 113 HOH HOH . C 3 HOH A 95 1695 4 HOH HOH . C 3 HOH A 96 1696 42 HOH HOH . C 3 HOH A 97 1697 205 HOH HOH . C 3 HOH A 98 1698 38 HOH HOH . C 3 HOH A 99 1699 43 HOH HOH . C 3 HOH A 100 1700 44 HOH HOH . C 3 HOH A 101 1701 116 HOH HOH . C 3 HOH A 102 1702 152 HOH HOH . C 3 HOH A 103 1703 122 HOH HOH . C 3 HOH A 104 1704 23 HOH HOH . C 3 HOH A 105 1705 15 HOH HOH . C 3 HOH A 106 1706 127 HOH HOH . C 3 HOH A 107 1707 3 HOH HOH . C 3 HOH A 108 1708 40 HOH HOH . C 3 HOH A 109 1709 86 HOH HOH . C 3 HOH A 110 1710 178 HOH HOH . C 3 HOH A 111 1711 120 HOH HOH . C 3 HOH A 112 1712 90 HOH HOH . C 3 HOH A 113 1713 48 HOH HOH . C 3 HOH A 114 1714 80 HOH HOH . C 3 HOH A 115 1715 88 HOH HOH . C 3 HOH A 116 1716 67 HOH HOH . C 3 HOH A 117 1717 105 HOH HOH . C 3 HOH A 118 1718 29 HOH HOH . C 3 HOH A 119 1719 129 HOH HOH . C 3 HOH A 120 1720 49 HOH HOH . C 3 HOH A 121 1721 125 HOH HOH . C 3 HOH A 122 1722 168 HOH HOH . C 3 HOH A 123 1723 37 HOH HOH . C 3 HOH A 124 1724 202 HOH HOH . C 3 HOH A 125 1725 2 HOH HOH . C 3 HOH A 126 1726 53 HOH HOH . C 3 HOH A 127 1727 81 HOH HOH . C 3 HOH A 128 1728 72 HOH HOH . C 3 HOH A 129 1729 57 HOH HOH . C 3 HOH A 130 1730 175 HOH HOH . C 3 HOH A 131 1731 22 HOH HOH . C 3 HOH A 132 1732 106 HOH HOH . C 3 HOH A 133 1733 96 HOH HOH . C 3 HOH A 134 1734 150 HOH HOH . C 3 HOH A 135 1735 34 HOH HOH . C 3 HOH A 136 1736 136 HOH HOH . C 3 HOH A 137 1737 13 HOH HOH . C 3 HOH A 138 1738 2 HOH HOH . C 3 HOH A 139 1739 158 HOH HOH . C 3 HOH A 140 1740 174 HOH HOH . C 3 HOH A 141 1741 95 HOH HOH . C 3 HOH A 142 1742 117 HOH HOH . C 3 HOH A 143 1743 134 HOH HOH . C 3 HOH A 144 1744 118 HOH HOH . C 3 HOH A 145 1745 93 HOH HOH . C 3 HOH A 146 1746 146 HOH HOH . C 3 HOH A 147 1747 165 HOH HOH . C 3 HOH A 148 1748 135 HOH HOH . C 3 HOH A 149 1749 109 HOH HOH . C 3 HOH A 150 1750 137 HOH HOH . C 3 HOH A 151 1751 166 HOH HOH . C 3 HOH A 152 1752 153 HOH HOH . C 3 HOH A 153 1753 199 HOH HOH . C 3 HOH A 154 1754 164 HOH HOH . C 3 HOH A 155 1755 115 HOH HOH . C 3 HOH A 156 1756 126 HOH HOH . C 3 HOH A 157 1757 133 HOH HOH . C 3 HOH A 158 1758 8 HOH HOH . C 3 HOH A 159 1759 185 HOH HOH . C 3 HOH A 160 1760 114 HOH HOH . C 3 HOH A 161 1761 6 HOH HOH . C 3 HOH A 162 1762 107 HOH HOH . C 3 HOH A 163 1763 198 HOH HOH . C 3 HOH A 164 1764 186 HOH HOH . C 3 HOH A 165 1765 61 HOH HOH . C 3 HOH A 166 1766 51 HOH HOH . C 3 HOH A 167 1767 149 HOH HOH . C 3 HOH A 168 1768 1 HOH HOH . C 3 HOH A 169 1769 112 HOH HOH . C 3 HOH A 170 1770 170 HOH HOH . C 3 HOH A 171 1771 188 HOH HOH . C 3 HOH A 172 1772 208 HOH HOH . C 3 HOH A 173 1773 190 HOH HOH . C 3 HOH A 174 1774 104 HOH HOH . C 3 HOH A 175 1775 10 HOH HOH . C 3 HOH A 176 1776 30 HOH HOH . C 3 HOH A 177 1777 193 HOH HOH . C 3 HOH A 178 1778 9 HOH HOH . C 3 HOH A 179 1779 201 HOH HOH . C 3 HOH A 180 1780 110 HOH HOH . C 3 HOH A 181 1781 102 HOH HOH . C 3 HOH A 182 1782 68 HOH HOH . C 3 HOH A 183 1783 78 HOH HOH . C 3 HOH A 184 1784 73 HOH HOH . C 3 HOH A 185 1785 103 HOH HOH . C 3 HOH A 186 1786 46 HOH HOH . C 3 HOH A 187 1787 206 HOH HOH . C 3 HOH A 188 1788 156 HOH HOH . C 3 HOH A 189 1789 200 HOH HOH . C 3 HOH A 190 1790 5 HOH HOH . C 3 HOH A 191 1791 196 HOH HOH . C 3 HOH A 192 1792 111 HOH HOH . C 3 HOH A 193 1793 148 HOH HOH . C 3 HOH A 194 1794 87 HOH HOH . C 3 HOH A 195 1795 97 HOH HOH . C 3 HOH A 196 1796 192 HOH HOH . C 3 HOH A 197 1797 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NUA . . . B 2 -18.703 14.199 26.808 0.5 14.86 ? N1 NUA 1501 A 1 HETATM 2 N N3 NUA . . . B 2 -18.83 14.182 25.473 0.5 14.14 ? N3 NUA 1501 A 1 HETATM 3 C C4 NUA . . . B 2 -17.615 16.006 26.119 0.5 14.32 ? C4 NUA 1501 A 1 HETATM 4 C C5 NUA . . . B 2 -16.002 17.694 26.976 0.5 15.45 ? C5 NUA 1501 A 1 HETATM 5 C C6 NUA . . . B 2 -15.317 18.981 26.596 0.5 16.94 ? C6 NUA 1501 A 1 HETATM 6 C C7 NUA . . . B 2 -14.157 19.42 27.517 0.5 17.89 ? C7 NUA 1501 A 1 HETATM 7 C C8 NUA . . . B 2 -13.426 19.886 26.231 0.5 18.34 ? C8 NUA 1501 A 1 HETATM 8 C C10 NUA . . . B 2 -18.176 15.277 25.009 0.5 13.81 ? C10 NUA 1501 A 1 HETATM 9 C C1 NUA . . . B 2 -20.893 13.277 27.435 0.5 15.44 ? C1 NUA 1501 A 1 HETATM 10 C C2 NUA . . . B 2 -19.372 13.179 27.614 0.5 15.32 ? C2 NUA 1501 A 1 HETATM 11 C C3 NUA . . . B 2 -17.963 15.272 27.255 0.5 14.97 ? C3 NUA 1501 A 1 HETATM 12 C C9 NUA . . . B 2 -14.294 18.877 25.44 0.5 17.74 ? C9 NUA 1501 A 1 HETATM 13 N N2 NUA . . . B 2 -16.827 17.139 26.002 0.5 15 ? N2 NUA 1501 A 1 HETATM 14 O O1 NUA . . . B 2 -15.808 17.167 28.045 0.5 13.5 ? O1 NUA 1501 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 14 #