data_5RKO # _model_server_result.job_id OCaTZdHQq1hOawgEzKPDOQ _model_server_result.datetime_utc '2024-11-12 21:40:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKO # _exptl.entry_id 5RKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.296 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cyclopropyl-[4-(4-fluorophenyl)piperazin-1-yl]methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.27 _cell.angle_gamma 90 _cell.entry_id 5RKO _cell.length_a 82.01 _cell.length_b 27.06 _cell.length_c 55.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H17 F N2 O' _chem_comp.formula_weight 248.296 _chem_comp.id GX4 _chem_comp.mon_nstd_flag . _chem_comp.name cyclopropyl-[4-(4-fluorophenyl)piperazin-1-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GX4 doub 129 n y C1 C GX4 sing 130 n y C2 C3 GX4 sing 131 n y F C GX4 sing 132 n n C C5 GX4 doub 133 n y C6 C7 GX4 sing 134 n n C6 N GX4 sing 135 n n C3 N GX4 sing 136 n n C3 C4 GX4 doub 137 n y C7 N1 GX4 sing 138 n n C5 C4 GX4 sing 139 n y N C9 GX4 sing 140 n n O C10 GX4 doub 141 n n N1 C10 GX4 sing 142 n n N1 C8 GX4 sing 143 n n C9 C8 GX4 sing 144 n n C10 C11 GX4 sing 145 n n C11 C13 GX4 sing 146 n n C11 C12 GX4 sing 147 n n C13 C12 GX4 sing 148 n n C4 H1 GX4 sing 149 n n C5 H2 GX4 sing 150 n n C6 H3 GX4 sing 151 n n C6 H4 GX4 sing 152 n n C7 H5 GX4 sing 153 n n C7 H6 GX4 sing 154 n n C8 H7 GX4 sing 155 n n C8 H8 GX4 sing 156 n n C13 H9 GX4 sing 157 n n C13 H10 GX4 sing 158 n n C11 H11 GX4 sing 159 n n C12 H12 GX4 sing 160 n n C12 H13 GX4 sing 161 n n C9 H14 GX4 sing 162 n n C9 H15 GX4 sing 163 n n C2 H16 GX4 sing 164 n n C1 H17 GX4 sing 165 n n # _atom_sites.entry_id 5RKO _atom_sites.fract_transf_matrix[1][1] 0.012194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002209 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GX4 A 1 1501 1501 GX4 LIG . C 3 HOH A 1 1601 89 HOH HOH . C 3 HOH A 2 1602 7 HOH HOH . C 3 HOH A 3 1603 183 HOH HOH . C 3 HOH A 4 1604 85 HOH HOH . C 3 HOH A 5 1605 141 HOH HOH . C 3 HOH A 6 1606 55 HOH HOH . C 3 HOH A 7 1607 195 HOH HOH . C 3 HOH A 8 1608 140 HOH HOH . C 3 HOH A 9 1609 204 HOH HOH . C 3 HOH A 10 1610 187 HOH HOH . C 3 HOH A 11 1611 160 HOH HOH . C 3 HOH A 12 1612 10 HOH HOH . C 3 HOH A 13 1613 124 HOH HOH . C 3 HOH A 14 1614 151 HOH HOH . C 3 HOH A 15 1615 184 HOH HOH . C 3 HOH A 16 1616 25 HOH HOH . C 3 HOH A 17 1617 60 HOH HOH . C 3 HOH A 18 1618 12 HOH HOH . C 3 HOH A 19 1619 176 HOH HOH . C 3 HOH A 20 1620 33 HOH HOH . C 3 HOH A 21 1621 50 HOH HOH . C 3 HOH A 22 1622 171 HOH HOH . C 3 HOH A 23 1623 121 HOH HOH . C 3 HOH A 24 1624 74 HOH HOH . C 3 HOH A 25 1625 83 HOH HOH . C 3 HOH A 26 1626 65 HOH HOH . C 3 HOH A 27 1627 5 HOH HOH . C 3 HOH A 28 1628 84 HOH HOH . C 3 HOH A 29 1629 154 HOH HOH . C 3 HOH A 30 1630 139 HOH HOH . C 3 HOH A 31 1631 94 HOH HOH . C 3 HOH A 32 1632 62 HOH HOH . C 3 HOH A 33 1633 16 HOH HOH . C 3 HOH A 34 1634 16 HOH HOH . C 3 HOH A 35 1635 1 HOH HOH . C 3 HOH A 36 1636 130 HOH HOH . C 3 HOH A 37 1637 36 HOH HOH . C 3 HOH A 38 1638 92 HOH HOH . C 3 HOH A 39 1639 20 HOH HOH . C 3 HOH A 40 1640 9 HOH HOH . C 3 HOH A 41 1641 182 HOH HOH . C 3 HOH A 42 1642 31 HOH HOH . C 3 HOH A 43 1643 45 HOH HOH . C 3 HOH A 44 1644 108 HOH HOH . C 3 HOH A 45 1645 64 HOH HOH . C 3 HOH A 46 1646 76 HOH HOH . C 3 HOH A 47 1647 123 HOH HOH . C 3 HOH A 48 1648 131 HOH HOH . C 3 HOH A 49 1649 35 HOH HOH . C 3 HOH A 50 1650 144 HOH HOH . C 3 HOH A 51 1651 88 HOH HOH . C 3 HOH A 52 1652 14 HOH HOH . C 3 HOH A 53 1653 106 HOH HOH . C 3 HOH A 54 1654 4 HOH HOH . C 3 HOH A 55 1655 40 HOH HOH . C 3 HOH A 56 1656 18 HOH HOH . C 3 HOH A 57 1657 52 HOH HOH . C 3 HOH A 58 1658 3 HOH HOH . C 3 HOH A 59 1659 28 HOH HOH . C 3 HOH A 60 1660 5 HOH HOH . C 3 HOH A 61 1661 63 HOH HOH . C 3 HOH A 62 1662 66 HOH HOH . C 3 HOH A 63 1663 116 HOH HOH . C 3 HOH A 64 1664 167 HOH HOH . C 3 HOH A 65 1665 39 HOH HOH . C 3 HOH A 66 1666 42 HOH HOH . C 3 HOH A 67 1667 119 HOH HOH . C 3 HOH A 68 1668 48 HOH HOH . C 3 HOH A 69 1669 2 HOH HOH . C 3 HOH A 70 1670 59 HOH HOH . C 3 HOH A 71 1671 175 HOH HOH . C 3 HOH A 72 1672 54 HOH HOH . C 3 HOH A 73 1673 82 HOH HOH . C 3 HOH A 74 1674 18 HOH HOH . C 3 HOH A 75 1675 21 HOH HOH . C 3 HOH A 76 1676 138 HOH HOH . C 3 HOH A 77 1677 29 HOH HOH . C 3 HOH A 78 1678 11 HOH HOH . C 3 HOH A 79 1679 19 HOH HOH . C 3 HOH A 80 1680 56 HOH HOH . C 3 HOH A 81 1681 69 HOH HOH . C 3 HOH A 82 1682 152 HOH HOH . C 3 HOH A 83 1683 105 HOH HOH . C 3 HOH A 84 1684 38 HOH HOH . C 3 HOH A 85 1685 71 HOH HOH . C 3 HOH A 86 1686 6 HOH HOH . C 3 HOH A 87 1687 27 HOH HOH . C 3 HOH A 88 1688 15 HOH HOH . C 3 HOH A 89 1689 70 HOH HOH . C 3 HOH A 90 1690 77 HOH HOH . C 3 HOH A 91 1691 23 HOH HOH . C 3 HOH A 92 1692 26 HOH HOH . C 3 HOH A 93 1693 113 HOH HOH . C 3 HOH A 94 1694 86 HOH HOH . C 3 HOH A 95 1695 4 HOH HOH . C 3 HOH A 96 1696 90 HOH HOH . C 3 HOH A 97 1697 128 HOH HOH . C 3 HOH A 98 1698 81 HOH HOH . C 3 HOH A 99 1699 72 HOH HOH . C 3 HOH A 100 1700 47 HOH HOH . C 3 HOH A 101 1701 127 HOH HOH . C 3 HOH A 102 1702 125 HOH HOH . C 3 HOH A 103 1703 67 HOH HOH . C 3 HOH A 104 1704 206 HOH HOH . C 3 HOH A 105 1705 91 HOH HOH . C 3 HOH A 106 1706 181 HOH HOH . C 3 HOH A 107 1707 49 HOH HOH . C 3 HOH A 108 1708 109 HOH HOH . C 3 HOH A 109 1709 3 HOH HOH . C 3 HOH A 110 1710 137 HOH HOH . C 3 HOH A 111 1711 2 HOH HOH . C 3 HOH A 112 1712 75 HOH HOH . C 3 HOH A 113 1713 57 HOH HOH . C 3 HOH A 114 1714 134 HOH HOH . C 3 HOH A 115 1715 22 HOH HOH . C 3 HOH A 116 1716 53 HOH HOH . C 3 HOH A 117 1717 174 HOH HOH . C 3 HOH A 118 1718 80 HOH HOH . C 3 HOH A 119 1719 43 HOH HOH . C 3 HOH A 120 1720 95 HOH HOH . C 3 HOH A 121 1721 118 HOH HOH . C 3 HOH A 122 1722 122 HOH HOH . C 3 HOH A 123 1723 136 HOH HOH . C 3 HOH A 124 1724 165 HOH HOH . C 3 HOH A 125 1725 96 HOH HOH . C 3 HOH A 126 1726 135 HOH HOH . C 3 HOH A 127 1727 34 HOH HOH . C 3 HOH A 128 1728 157 HOH HOH . C 3 HOH A 129 1729 117 HOH HOH . C 3 HOH A 130 1730 14 HOH HOH . C 3 HOH A 131 1731 145 HOH HOH . C 3 HOH A 132 1732 158 HOH HOH . C 3 HOH A 133 1733 13 HOH HOH . C 3 HOH A 134 1734 120 HOH HOH . C 3 HOH A 135 1735 166 HOH HOH . C 3 HOH A 136 1736 23 HOH HOH . C 3 HOH A 137 1737 146 HOH HOH . C 3 HOH A 138 1738 19 HOH HOH . C 3 HOH A 139 1739 9 HOH HOH . C 3 HOH A 140 1740 15 HOH HOH . C 3 HOH A 141 1741 126 HOH HOH . C 3 HOH A 142 1742 104 HOH HOH . C 3 HOH A 143 1743 199 HOH HOH . C 3 HOH A 144 1744 13 HOH HOH . C 3 HOH A 145 1745 150 HOH HOH . C 3 HOH A 146 1746 115 HOH HOH . C 3 HOH A 147 1747 8 HOH HOH . C 3 HOH A 148 1748 202 HOH HOH . C 3 HOH A 149 1749 185 HOH HOH . C 3 HOH A 150 1750 198 HOH HOH . C 3 HOH A 151 1751 114 HOH HOH . C 3 HOH A 152 1752 99 HOH HOH . C 3 HOH A 153 1753 156 HOH HOH . C 3 HOH A 154 1754 10 HOH HOH . C 3 HOH A 155 1755 61 HOH HOH . C 3 HOH A 156 1756 186 HOH HOH . C 3 HOH A 157 1757 30 HOH HOH . C 3 HOH A 158 1758 41 HOH HOH . C 3 HOH A 159 1759 51 HOH HOH . C 3 HOH A 160 1760 8 HOH HOH . C 3 HOH A 161 1761 168 HOH HOH . C 3 HOH A 162 1762 112 HOH HOH . C 3 HOH A 163 1763 20 HOH HOH . C 3 HOH A 164 1764 193 HOH HOH . C 3 HOH A 165 1765 190 HOH HOH . C 3 HOH A 166 1766 188 HOH HOH . C 3 HOH A 167 1767 170 HOH HOH . C 3 HOH A 168 1768 103 HOH HOH . C 3 HOH A 169 1769 110 HOH HOH . C 3 HOH A 170 1770 46 HOH HOH . C 3 HOH A 171 1771 1 HOH HOH . C 3 HOH A 172 1772 78 HOH HOH . C 3 HOH A 173 1773 68 HOH HOH . C 3 HOH A 174 1774 7 HOH HOH . C 3 HOH A 175 1775 102 HOH HOH . C 3 HOH A 176 1776 201 HOH HOH . C 3 HOH A 177 1777 24 HOH HOH . C 3 HOH A 178 1778 22 HOH HOH . C 3 HOH A 179 1779 73 HOH HOH . C 3 HOH A 180 1780 6 HOH HOH . C 3 HOH A 181 1781 196 HOH HOH . C 3 HOH A 182 1782 17 HOH HOH . C 3 HOH A 183 1783 93 HOH HOH . C 3 HOH A 184 1784 200 HOH HOH . C 3 HOH A 185 1785 111 HOH HOH . C 3 HOH A 186 1786 12 HOH HOH . C 3 HOH A 187 1787 21 HOH HOH . C 3 HOH A 188 1788 189 HOH HOH . C 3 HOH A 189 1789 192 HOH HOH . C 3 HOH A 190 1790 11 HOH HOH . C 3 HOH A 191 1791 87 HOH HOH . C 3 HOH A 192 1792 97 HOH HOH . C 3 HOH A 193 1793 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GX4 . . . B 2 -16.559 14.327 26.23 0.49 19.94 ? N1 GX4 1501 A 1 HETATM 2 C C4 GX4 . . . B 2 -21.168 12.826 27.005 0.49 17.83 ? C4 GX4 1501 A 1 HETATM 3 C C5 GX4 . . . B 2 -22.537 12.6 27.03 0.49 17.19 ? C5 GX4 1501 A 1 HETATM 4 C C6 GX4 . . . B 2 -18.277 12.784 27.166 0.49 19.01 ? C6 GX4 1501 A 1 HETATM 5 C C7 GX4 . . . B 2 -16.761 13.04 26.942 0.49 19.48 ? C7 GX4 1501 A 1 HETATM 6 C C8 GX4 . . . B 2 -17.339 14.492 24.961 0.49 19.85 ? C8 GX4 1501 A 1 HETATM 7 C C10 GX4 . . . B 2 -15.98 15.408 26.884 0.49 20.54 ? C10 GX4 1501 A 1 HETATM 8 C C13 GX4 . . . B 2 -14.613 17.504 26.277 0.49 21.24 ? C13 GX4 1501 A 1 HETATM 9 O O GX4 . . . B 2 -15.493 15.244 27.983 0.49 20.84 ? O GX4 1501 A 1 HETATM 10 C C11 GX4 . . . B 2 -15.95 16.763 26.273 0.49 21.13 ? C11 GX4 1501 A 1 HETATM 11 C C12 GX4 . . . B 2 -15.7 17.889 27.259 0.49 21.18 ? C12 GX4 1501 A 1 HETATM 12 C C9 GX4 . . . B 2 -18.838 14.159 25.194 0.49 19.38 ? C9 GX4 1501 A 1 HETATM 13 N N GX4 . . . B 2 -19.009 12.836 25.874 0.49 19.06 ? N GX4 1501 A 1 HETATM 14 C C3 GX4 . . . B 2 -20.391 12.401 25.895 0.49 18.67 ? C3 GX4 1501 A 1 HETATM 15 C C2 GX4 . . . B 2 -20.99 11.699 24.843 0.49 18.22 ? C2 GX4 1501 A 1 HETATM 16 C C1 GX4 . . . B 2 -22.363 11.464 24.839 0.49 16.65 ? C1 GX4 1501 A 1 HETATM 17 C C GX4 . . . B 2 -23.136 11.959 25.923 0.49 16.65 ? C GX4 1501 A 1 HETATM 18 F F GX4 . . . B 2 -24.471 11.946 25.8 0.49 15.21 ? F GX4 1501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #