data_5RKP # _model_server_result.job_id 83aSBM8RsVHCZt7ifqoEHw _model_server_result.datetime_utc '2024-11-22 15:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKP # _exptl.entry_id 5RKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.213 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methyl-2-[(3-methyl-1,2-oxazol-5-yl)methyl]pyridazin-3(2H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.02 _cell.angle_gamma 90 _cell.entry_id 5RKP _cell.length_a 81.76 _cell.length_b 27.35 _cell.length_c 55.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H11 N3 O2' _chem_comp.formula_weight 205.213 _chem_comp.id UWS _chem_comp.mon_nstd_flag . _chem_comp.name 6-methyl-2-[(3-methyl-1,2-oxazol-5-yl)methyl]pyridazin-3(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 UWS sing 358 n n C1 N2 UWS doub 359 n y C1 C2 UWS sing 360 n y N2 O1 UWS sing 361 n y C2 C3 UWS doub 362 n y O1 C3 UWS sing 363 n y C3 C4 UWS sing 364 n n C4 N UWS sing 365 n n N1 N UWS sing 366 n n N1 C5 UWS doub 367 n n N C9 UWS sing 368 n n O C9 UWS doub 369 n n C6 C5 UWS sing 370 n n C9 C8 UWS sing 371 n n C5 C7 UWS sing 372 n n C8 C7 UWS doub 373 n n C4 H1 UWS sing 374 n n C4 H2 UWS sing 375 n n C6 H3 UWS sing 376 n n C6 H4 UWS sing 377 n n C6 H5 UWS sing 378 n n C7 H6 UWS sing 379 n n C8 H7 UWS sing 380 n n C H8 UWS sing 381 n n C H9 UWS sing 382 n n C H10 UWS sing 383 n n C2 H11 UWS sing 384 n n # _atom_sites.entry_id 5RKP _atom_sites.fract_transf_matrix[1][1] 0.012231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UWS A 1 1501 1501 UWS LIG . C 3 HOH A 1 1601 195 HOH HOH . C 3 HOH A 2 1602 183 HOH HOH . C 3 HOH A 3 1603 7 HOH HOH . C 3 HOH A 4 1604 121 HOH HOH . C 3 HOH A 5 1605 89 HOH HOH . C 3 HOH A 6 1606 17 HOH HOH . C 3 HOH A 7 1607 204 HOH HOH . C 3 HOH A 8 1608 50 HOH HOH . C 3 HOH A 9 1609 162 HOH HOH . C 3 HOH A 10 1610 33 HOH HOH . C 3 HOH A 11 1611 1 HOH HOH . C 3 HOH A 12 1612 187 HOH HOH . C 3 HOH A 13 1613 140 HOH HOH . C 3 HOH A 14 1614 25 HOH HOH . C 3 HOH A 15 1615 141 HOH HOH . C 3 HOH A 16 1616 98 HOH HOH . C 3 HOH A 17 1617 124 HOH HOH . C 3 HOH A 18 1618 151 HOH HOH . C 3 HOH A 19 1619 184 HOH HOH . C 3 HOH A 20 1620 160 HOH HOH . C 3 HOH A 21 1621 16 HOH HOH . C 3 HOH A 22 1622 74 HOH HOH . C 3 HOH A 23 1623 9 HOH HOH . C 3 HOH A 24 1624 4 HOH HOH . C 3 HOH A 25 1625 12 HOH HOH . C 3 HOH A 26 1626 83 HOH HOH . C 3 HOH A 27 1627 135 HOH HOH . C 3 HOH A 28 1628 60 HOH HOH . C 3 HOH A 29 1629 35 HOH HOH . C 3 HOH A 30 1630 94 HOH HOH . C 3 HOH A 31 1631 14 HOH HOH . C 3 HOH A 32 1632 205 HOH HOH . C 3 HOH A 33 1633 20 HOH HOH . C 3 HOH A 34 1634 101 HOH HOH . C 3 HOH A 35 1635 31 HOH HOH . C 3 HOH A 36 1636 92 HOH HOH . C 3 HOH A 37 1637 130 HOH HOH . C 3 HOH A 38 1638 159 HOH HOH . C 3 HOH A 39 1639 119 HOH HOH . C 3 HOH A 40 1640 65 HOH HOH . C 3 HOH A 41 1641 182 HOH HOH . C 3 HOH A 42 1642 62 HOH HOH . C 3 HOH A 43 1643 180 HOH HOH . C 3 HOH A 44 1644 45 HOH HOH . C 3 HOH A 45 1645 208 HOH HOH . C 3 HOH A 46 1646 11 HOH HOH . C 3 HOH A 47 1647 139 HOH HOH . C 3 HOH A 48 1648 55 HOH HOH . C 3 HOH A 49 1649 22 HOH HOH . C 3 HOH A 50 1650 36 HOH HOH . C 3 HOH A 51 1651 28 HOH HOH . C 3 HOH A 52 1652 5 HOH HOH . C 3 HOH A 53 1653 1 HOH HOH . C 3 HOH A 54 1654 91 HOH HOH . C 3 HOH A 55 1655 21 HOH HOH . C 3 HOH A 56 1656 32 HOH HOH . C 3 HOH A 57 1657 77 HOH HOH . C 3 HOH A 58 1658 165 HOH HOH . C 3 HOH A 59 1659 172 HOH HOH . C 3 HOH A 60 1660 122 HOH HOH . C 3 HOH A 61 1661 137 HOH HOH . C 3 HOH A 62 1662 42 HOH HOH . C 3 HOH A 63 1663 76 HOH HOH . C 3 HOH A 64 1664 70 HOH HOH . C 3 HOH A 65 1665 176 HOH HOH . C 3 HOH A 66 1666 14 HOH HOH . C 3 HOH A 67 1667 113 HOH HOH . C 3 HOH A 68 1668 7 HOH HOH . C 3 HOH A 69 1669 6 HOH HOH . C 3 HOH A 70 1670 145 HOH HOH . C 3 HOH A 71 1671 19 HOH HOH . C 3 HOH A 72 1672 108 HOH HOH . C 3 HOH A 73 1673 144 HOH HOH . C 3 HOH A 74 1674 88 HOH HOH . C 3 HOH A 75 1675 39 HOH HOH . C 3 HOH A 76 1676 152 HOH HOH . C 3 HOH A 77 1677 191 HOH HOH . C 3 HOH A 78 1678 123 HOH HOH . C 3 HOH A 79 1679 3 HOH HOH . C 3 HOH A 80 1680 63 HOH HOH . C 3 HOH A 81 1681 56 HOH HOH . C 3 HOH A 82 1682 66 HOH HOH . C 3 HOH A 83 1683 69 HOH HOH . C 3 HOH A 84 1684 64 HOH HOH . C 3 HOH A 85 1685 43 HOH HOH . C 3 HOH A 86 1686 54 HOH HOH . C 3 HOH A 87 1687 177 HOH HOH . C 3 HOH A 88 1688 29 HOH HOH . C 3 HOH A 89 1689 40 HOH HOH . C 3 HOH A 90 1690 116 HOH HOH . C 3 HOH A 91 1691 27 HOH HOH . C 3 HOH A 92 1692 157 HOH HOH . C 3 HOH A 93 1693 128 HOH HOH . C 3 HOH A 94 1694 23 HOH HOH . C 3 HOH A 95 1695 175 HOH HOH . C 3 HOH A 96 1696 44 HOH HOH . C 3 HOH A 97 1697 15 HOH HOH . C 3 HOH A 98 1698 48 HOH HOH . C 3 HOH A 99 1699 52 HOH HOH . C 3 HOH A 100 1700 207 HOH HOH . C 3 HOH A 101 1701 86 HOH HOH . C 3 HOH A 102 1702 80 HOH HOH . C 3 HOH A 103 1703 18 HOH HOH . C 3 HOH A 104 1704 38 HOH HOH . C 3 HOH A 105 1705 105 HOH HOH . C 3 HOH A 106 1706 67 HOH HOH . C 3 HOH A 107 1707 82 HOH HOH . C 3 HOH A 108 1708 163 HOH HOH . C 3 HOH A 109 1709 49 HOH HOH . C 3 HOH A 110 1710 37 HOH HOH . C 3 HOH A 111 1711 84 HOH HOH . C 3 HOH A 112 1712 90 HOH HOH . C 3 HOH A 113 1713 125 HOH HOH . C 3 HOH A 114 1714 22 HOH HOH . C 3 HOH A 115 1715 71 HOH HOH . C 3 HOH A 116 1716 2 HOH HOH . C 3 HOH A 117 1717 57 HOH HOH . C 3 HOH A 118 1718 95 HOH HOH . C 3 HOH A 119 1719 53 HOH HOH . C 3 HOH A 120 1720 81 HOH HOH . C 3 HOH A 121 1721 120 HOH HOH . C 3 HOH A 122 1722 129 HOH HOH . C 3 HOH A 123 1723 20 HOH HOH . C 3 HOH A 124 1724 127 HOH HOH . C 3 HOH A 125 1725 136 HOH HOH . C 3 HOH A 126 1726 75 HOH HOH . C 3 HOH A 127 1727 58 HOH HOH . C 3 HOH A 128 1728 34 HOH HOH . C 3 HOH A 129 1729 72 HOH HOH . C 3 HOH A 130 1730 118 HOH HOH . C 3 HOH A 131 1731 158 HOH HOH . C 3 HOH A 132 1732 134 HOH HOH . C 3 HOH A 133 1733 109 HOH HOH . C 3 HOH A 134 1734 174 HOH HOH . C 3 HOH A 135 1735 117 HOH HOH . C 3 HOH A 136 1736 24 HOH HOH . C 3 HOH A 137 1737 96 HOH HOH . C 3 HOH A 138 1738 13 HOH HOH . C 3 HOH A 139 1739 6 HOH HOH . C 3 HOH A 140 1740 15 HOH HOH . C 3 HOH A 141 1741 126 HOH HOH . C 3 HOH A 142 1742 166 HOH HOH . C 3 HOH A 143 1743 16 HOH HOH . C 3 HOH A 144 1744 206 HOH HOH . C 3 HOH A 145 1745 181 HOH HOH . C 3 HOH A 146 1746 131 HOH HOH . C 3 HOH A 147 1747 133 HOH HOH . C 3 HOH A 148 1748 47 HOH HOH . C 3 HOH A 149 1749 150 HOH HOH . C 3 HOH A 150 1750 202 HOH HOH . C 3 HOH A 151 1751 24 HOH HOH . C 3 HOH A 152 1752 153 HOH HOH . C 3 HOH A 153 1753 185 HOH HOH . C 3 HOH A 154 1754 199 HOH HOH . C 3 HOH A 155 1755 107 HOH HOH . C 3 HOH A 156 1756 8 HOH HOH . C 3 HOH A 157 1757 115 HOH HOH . C 3 HOH A 158 1758 114 HOH HOH . C 3 HOH A 159 1759 156 HOH HOH . C 3 HOH A 160 1760 3 HOH HOH . C 3 HOH A 161 1761 61 HOH HOH . C 3 HOH A 162 1762 198 HOH HOH . C 3 HOH A 163 1763 186 HOH HOH . C 3 HOH A 164 1764 30 HOH HOH . C 3 HOH A 165 1765 190 HOH HOH . C 3 HOH A 166 1766 170 HOH HOH . C 3 HOH A 167 1767 51 HOH HOH . C 3 HOH A 168 1768 112 HOH HOH . C 3 HOH A 169 1769 12 HOH HOH . C 3 HOH A 170 1770 11 HOH HOH . C 3 HOH A 171 1771 2 HOH HOH . C 3 HOH A 172 1772 41 HOH HOH . C 3 HOH A 173 1773 110 HOH HOH . C 3 HOH A 174 1774 104 HOH HOH . C 3 HOH A 175 1775 188 HOH HOH . C 3 HOH A 176 1776 201 HOH HOH . C 3 HOH A 177 1777 13 HOH HOH . C 3 HOH A 178 1778 46 HOH HOH . C 3 HOH A 179 1779 27 HOH HOH . C 3 HOH A 180 1780 5 HOH HOH . C 3 HOH A 181 1781 68 HOH HOH . C 3 HOH A 182 1782 103 HOH HOH . C 3 HOH A 183 1783 23 HOH HOH . C 3 HOH A 184 1784 102 HOH HOH . C 3 HOH A 185 1785 78 HOH HOH . C 3 HOH A 186 1786 73 HOH HOH . C 3 HOH A 187 1787 25 HOH HOH . C 3 HOH A 188 1788 99 HOH HOH . C 3 HOH A 189 1789 193 HOH HOH . C 3 HOH A 190 1790 4 HOH HOH . C 3 HOH A 191 1791 9 HOH HOH . C 3 HOH A 192 1792 200 HOH HOH . C 3 HOH A 193 1793 21 HOH HOH . C 3 HOH A 194 1794 10 HOH HOH . C 3 HOH A 195 1795 26 HOH HOH . C 3 HOH A 196 1796 18 HOH HOH . C 3 HOH A 197 1797 196 HOH HOH . C 3 HOH A 198 1798 87 HOH HOH . C 3 HOH A 199 1799 111 HOH HOH . C 3 HOH A 200 1800 192 HOH HOH . C 3 HOH A 201 1801 8 HOH HOH . C 3 HOH A 202 1802 97 HOH HOH . C 3 HOH A 203 1803 79 HOH HOH . C 3 HOH A 204 1804 203 HOH HOH . C 3 HOH A 205 1805 17 HOH HOH . C 3 HOH A 206 1806 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UWS . . . B 2 -20.917 16.291 28.898 0.45 30.99 ? N1 UWS 1501 A 1 HETATM 2 C C4 UWS . . . B 2 -19.694 14.157 28.525 0.45 29.48 ? C4 UWS 1501 A 1 HETATM 3 C C5 UWS . . . B 2 -21.975 16.935 29.466 0.45 31.18 ? C5 UWS 1501 A 1 HETATM 4 C C6 UWS . . . B 2 -22.015 18.436 29.386 0.45 31.37 ? C6 UWS 1501 A 1 HETATM 5 C C7 UWS . . . B 2 -23.075 16.255 30.094 0.45 30.97 ? C7 UWS 1501 A 1 HETATM 6 C C8 UWS . . . B 2 -23.086 14.919 30.077 0.45 30.84 ? C8 UWS 1501 A 1 HETATM 7 N N UWS . . . B 2 -20.935 14.917 28.912 0.45 30.38 ? N UWS 1501 A 1 HETATM 8 C C UWS . . . B 2 -18.117 14.155 23.785 0.45 28.12 ? C UWS 1501 A 1 HETATM 9 O O UWS . . . B 2 -21.979 12.949 29.338 0.45 30.65 ? O UWS 1501 A 1 HETATM 10 C C1 UWS . . . B 2 -18.7 13.798 25.064 0.45 28.14 ? C1 UWS 1501 A 1 HETATM 11 C C2 UWS . . . B 2 -19.016 14.721 26.113 0.45 28.33 ? C2 UWS 1501 A 1 HETATM 12 C C3 UWS . . . B 2 -19.413 13.921 27.123 0.45 28.74 ? C3 UWS 1501 A 1 HETATM 13 C C9 UWS . . . B 2 -22.002 14.159 29.449 0.45 30.66 ? C9 UWS 1501 A 1 HETATM 14 N N2 UWS . . . B 2 -18.95 12.538 25.473 0.45 28.02 ? N2 UWS 1501 A 1 HETATM 15 O O1 UWS . . . B 2 -19.382 12.608 26.729 0.45 28.42 ? O1 UWS 1501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #