data_5RKT # _model_server_result.job_id ob0Z8RfFQVTUp5HB8fU5Dg _model_server_result.datetime_utc '2024-11-23 23:36:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKT # _exptl.entry_id 5RKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.192 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1H-pyrazol-4-yl)(pyrrolidin-1-yl)methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.77 _cell.angle_gamma 90 _cell.entry_id 5RKT _cell.length_a 82.25 _cell.length_b 26.77 _cell.length_c 55.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H11 N3 O' _chem_comp.formula_weight 165.192 _chem_comp.id UXD _chem_comp.mon_nstd_flag . _chem_comp.name (1H-pyrazol-4-yl)(pyrrolidin-1-yl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C UXD doub 358 n n C1 C2 UXD sing 359 n n C1 N UXD sing 360 n n C N UXD sing 361 n n C C5 UXD sing 362 n n C7 C5 UXD sing 363 n y C7 N2 UXD doub 364 n y C2 C3 UXD sing 365 n n N C4 UXD sing 366 n n C5 C6 UXD doub 367 n y N2 N1 UXD sing 368 n y C3 C4 UXD sing 369 n n C6 N1 UXD sing 370 n y N1 H1 UXD sing 371 n n C4 H2 UXD sing 372 n n C4 H3 UXD sing 373 n n C6 H4 UXD sing 374 n n C7 H5 UXD sing 375 n n C1 H6 UXD sing 376 n n C1 H7 UXD sing 377 n n C2 H8 UXD sing 378 n n C2 H9 UXD sing 379 n n C3 H10 UXD sing 380 n n C3 H11 UXD sing 381 n n # _atom_sites.entry_id 5RKT _atom_sites.fract_transf_matrix[1][1] 0.012158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UXD A 1 1501 1501 UXD LIG . C 3 HOH A 1 1601 206 HOH HOH . C 3 HOH A 2 1602 55 HOH HOH . C 3 HOH A 3 1603 141 HOH HOH . C 3 HOH A 4 1604 7 HOH HOH . C 3 HOH A 5 1605 17 HOH HOH . C 3 HOH A 6 1606 159 HOH HOH . C 3 HOH A 7 1607 121 HOH HOH . C 3 HOH A 8 1608 89 HOH HOH . C 3 HOH A 9 1609 18 HOH HOH . C 3 HOH A 10 1610 162 HOH HOH . C 3 HOH A 11 1611 33 HOH HOH . C 3 HOH A 12 1612 124 HOH HOH . C 3 HOH A 13 1613 187 HOH HOH . C 3 HOH A 14 1614 74 HOH HOH . C 3 HOH A 15 1615 160 HOH HOH . C 3 HOH A 16 1616 62 HOH HOH . C 3 HOH A 17 1617 35 HOH HOH . C 3 HOH A 18 1618 183 HOH HOH . C 3 HOH A 19 1619 31 HOH HOH . C 3 HOH A 20 1620 47 HOH HOH . C 3 HOH A 21 1621 8 HOH HOH . C 3 HOH A 22 1622 50 HOH HOH . C 3 HOH A 23 1623 83 HOH HOH . C 3 HOH A 24 1624 16 HOH HOH . C 3 HOH A 25 1625 20 HOH HOH . C 3 HOH A 26 1626 101 HOH HOH . C 3 HOH A 27 1627 205 HOH HOH . C 3 HOH A 28 1628 11 HOH HOH . C 3 HOH A 29 1629 12 HOH HOH . C 3 HOH A 30 1630 66 HOH HOH . C 3 HOH A 31 1631 10 HOH HOH . C 3 HOH A 32 1632 36 HOH HOH . C 3 HOH A 33 1633 60 HOH HOH . C 3 HOH A 34 1634 25 HOH HOH . C 3 HOH A 35 1635 54 HOH HOH . C 3 HOH A 36 1636 158 HOH HOH . C 3 HOH A 37 1637 39 HOH HOH . C 3 HOH A 38 1638 182 HOH HOH . C 3 HOH A 39 1639 26 HOH HOH . C 3 HOH A 40 1640 9 HOH HOH . C 3 HOH A 41 1641 150 HOH HOH . C 3 HOH A 42 1642 45 HOH HOH . C 3 HOH A 43 1643 1 HOH HOH . C 3 HOH A 44 1644 18 HOH HOH . C 3 HOH A 45 1645 139 HOH HOH . C 3 HOH A 46 1646 3 HOH HOH . C 3 HOH A 47 1647 75 HOH HOH . C 3 HOH A 48 1648 14 HOH HOH . C 3 HOH A 49 1649 123 HOH HOH . C 3 HOH A 50 1650 70 HOH HOH . C 3 HOH A 51 1651 176 HOH HOH . C 3 HOH A 52 1652 41 HOH HOH . C 3 HOH A 53 1653 84 HOH HOH . C 3 HOH A 54 1654 26 HOH HOH . C 3 HOH A 55 1655 28 HOH HOH . C 3 HOH A 56 1656 71 HOH HOH . C 3 HOH A 57 1657 82 HOH HOH . C 3 HOH A 58 1658 144 HOH HOH . C 3 HOH A 59 1659 27 HOH HOH . C 3 HOH A 60 1660 4 HOH HOH . C 3 HOH A 61 1661 174 HOH HOH . C 3 HOH A 62 1662 38 HOH HOH . C 3 HOH A 63 1663 138 HOH HOH . C 3 HOH A 64 1664 6 HOH HOH . C 3 HOH A 65 1665 77 HOH HOH . C 3 HOH A 66 1666 5 HOH HOH . C 3 HOH A 67 1667 152 HOH HOH . C 3 HOH A 68 1668 80 HOH HOH . C 3 HOH A 69 1669 56 HOH HOH . C 3 HOH A 70 1670 59 HOH HOH . C 3 HOH A 71 1671 52 HOH HOH . C 3 HOH A 72 1672 132 HOH HOH . C 3 HOH A 73 1673 171 HOH HOH . C 3 HOH A 74 1674 21 HOH HOH . C 3 HOH A 75 1675 202 HOH HOH . C 3 HOH A 76 1676 76 HOH HOH . C 3 HOH A 77 1677 11 HOH HOH . C 3 HOH A 78 1678 63 HOH HOH . C 3 HOH A 79 1679 135 HOH HOH . C 3 HOH A 80 1680 130 HOH HOH . C 3 HOH A 81 1681 65 HOH HOH . C 3 HOH A 82 1682 157 HOH HOH . C 3 HOH A 83 1683 204 HOH HOH . C 3 HOH A 84 1684 180 HOH HOH . C 3 HOH A 85 1685 137 HOH HOH . C 3 HOH A 86 1686 42 HOH HOH . C 3 HOH A 87 1687 98 HOH HOH . C 3 HOH A 88 1688 177 HOH HOH . C 3 HOH A 89 1689 119 HOH HOH . C 3 HOH A 90 1690 191 HOH HOH . C 3 HOH A 91 1691 40 HOH HOH . C 3 HOH A 92 1692 10 HOH HOH . C 3 HOH A 93 1693 92 HOH HOH . C 3 HOH A 94 1694 128 HOH HOH . C 3 HOH A 95 1695 90 HOH HOH . C 3 HOH A 96 1696 86 HOH HOH . C 3 HOH A 97 1697 163 HOH HOH . C 3 HOH A 98 1698 49 HOH HOH . C 3 HOH A 99 1699 105 HOH HOH . C 3 HOH A 100 1700 195 HOH HOH . C 3 HOH A 101 1701 96 HOH HOH . C 3 HOH A 102 1702 27 HOH HOH . C 3 HOH A 103 1703 113 HOH HOH . C 3 HOH A 104 1704 69 HOH HOH . C 3 HOH A 105 1705 116 HOH HOH . C 3 HOH A 106 1706 72 HOH HOH . C 3 HOH A 107 1707 131 HOH HOH . C 3 HOH A 108 1708 23 HOH HOH . C 3 HOH A 109 1709 166 HOH HOH . C 3 HOH A 110 1710 170 HOH HOH . C 3 HOH A 111 1711 29 HOH HOH . C 3 HOH A 112 1712 58 HOH HOH . C 3 HOH A 113 1713 88 HOH HOH . C 3 HOH A 114 1714 33 HOH HOH . C 3 HOH A 115 1715 91 HOH HOH . C 3 HOH A 116 1716 64 HOH HOH . C 3 HOH A 117 1717 127 HOH HOH . C 3 HOH A 118 1718 172 HOH HOH . C 3 HOH A 119 1719 37 HOH HOH . C 3 HOH A 120 1720 2 HOH HOH . C 3 HOH A 121 1721 53 HOH HOH . C 3 HOH A 122 1722 67 HOH HOH . C 3 HOH A 123 1723 181 HOH HOH . C 3 HOH A 124 1724 48 HOH HOH . C 3 HOH A 125 1725 81 HOH HOH . C 3 HOH A 126 1726 15 HOH HOH . C 3 HOH A 127 1727 23 HOH HOH . C 3 HOH A 128 1728 125 HOH HOH . C 3 HOH A 129 1729 109 HOH HOH . C 3 HOH A 130 1730 146 HOH HOH . C 3 HOH A 131 1731 19 HOH HOH . C 3 HOH A 132 1732 145 HOH HOH . C 3 HOH A 133 1733 15 HOH HOH . C 3 HOH A 134 1734 13 HOH HOH . C 3 HOH A 135 1735 22 HOH HOH . C 3 HOH A 136 1736 108 HOH HOH . C 3 HOH A 137 1737 44 HOH HOH . C 3 HOH A 138 1738 134 HOH HOH . C 3 HOH A 139 1739 57 HOH HOH . C 3 HOH A 140 1740 120 HOH HOH . C 3 HOH A 141 1741 4 HOH HOH . C 3 HOH A 142 1742 34 HOH HOH . C 3 HOH A 143 1743 25 HOH HOH . C 3 HOH A 144 1744 118 HOH HOH . C 3 HOH A 145 1745 19 HOH HOH . C 3 HOH A 146 1746 136 HOH HOH . C 3 HOH A 147 1747 117 HOH HOH . C 3 HOH A 148 1748 5 HOH HOH . C 3 HOH A 149 1749 24 HOH HOH . C 3 HOH A 150 1750 94 HOH HOH . C 3 HOH A 151 1751 194 HOH HOH . C 3 HOH A 152 1752 95 HOH HOH . C 3 HOH A 153 1753 167 HOH HOH . C 3 HOH A 154 1754 31 HOH HOH . C 3 HOH A 155 1755 164 HOH HOH . C 3 HOH A 156 1756 175 HOH HOH . C 3 HOH A 157 1757 165 HOH HOH . C 3 HOH A 158 1758 30 HOH HOH . C 3 HOH A 159 1759 7 HOH HOH . C 3 HOH A 160 1760 114 HOH HOH . C 3 HOH A 161 1761 126 HOH HOH . C 3 HOH A 162 1762 115 HOH HOH . C 3 HOH A 163 1763 30 HOH HOH . C 3 HOH A 164 1764 8 HOH HOH . C 3 HOH A 165 1765 24 HOH HOH . C 3 HOH A 166 1766 61 HOH HOH . C 3 HOH A 167 1767 6 HOH HOH . C 3 HOH A 168 1768 185 HOH HOH . C 3 HOH A 169 1769 43 HOH HOH . C 3 HOH A 170 1770 198 HOH HOH . C 3 HOH A 171 1771 188 HOH HOH . C 3 HOH A 172 1772 21 HOH HOH . C 3 HOH A 173 1773 186 HOH HOH . C 3 HOH A 174 1774 112 HOH HOH . C 3 HOH A 175 1775 169 HOH HOH . C 3 HOH A 176 1776 14 HOH HOH . C 3 HOH A 177 1777 110 HOH HOH . C 3 HOH A 178 1778 133 HOH HOH . C 3 HOH A 179 1779 34 HOH HOH . C 3 HOH A 180 1780 193 HOH HOH . C 3 HOH A 181 1781 51 HOH HOH . C 3 HOH A 182 1782 12 HOH HOH . C 3 HOH A 183 1783 190 HOH HOH . C 3 HOH A 184 1784 201 HOH HOH . C 3 HOH A 185 1785 129 HOH HOH . C 3 HOH A 186 1786 17 HOH HOH . C 3 HOH A 187 1787 100 HOH HOH . C 3 HOH A 188 1788 168 HOH HOH . C 3 HOH A 189 1789 99 HOH HOH . C 3 HOH A 190 1790 46 HOH HOH . C 3 HOH A 191 1791 68 HOH HOH . C 3 HOH A 192 1792 73 HOH HOH . C 3 HOH A 193 1793 103 HOH HOH . C 3 HOH A 194 1794 102 HOH HOH . C 3 HOH A 195 1795 156 HOH HOH . C 3 HOH A 196 1796 28 HOH HOH . C 3 HOH A 197 1797 78 HOH HOH . C 3 HOH A 198 1798 149 HOH HOH . C 3 HOH A 199 1799 32 HOH HOH . C 3 HOH A 200 1800 189 HOH HOH . C 3 HOH A 201 1801 9 HOH HOH . C 3 HOH A 202 1802 200 HOH HOH . C 3 HOH A 203 1803 93 HOH HOH . C 3 HOH A 204 1804 87 HOH HOH . C 3 HOH A 205 1805 199 HOH HOH . C 3 HOH A 206 1806 111 HOH HOH . C 3 HOH A 207 1807 29 HOH HOH . C 3 HOH A 208 1808 3 HOH HOH . C 3 HOH A 209 1809 97 HOH HOH . C 3 HOH A 210 1810 16 HOH HOH . C 3 HOH A 211 1811 192 HOH HOH . C 3 HOH A 212 1812 1 HOH HOH . C 3 HOH A 213 1813 148 HOH HOH . C 3 HOH A 214 1814 20 HOH HOH . C 3 HOH A 215 1815 196 HOH HOH . C 3 HOH A 216 1816 13 HOH HOH . C 3 HOH A 217 1817 79 HOH HOH . C 3 HOH A 218 1818 2 HOH HOH . C 3 HOH A 219 1819 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UXD . . . B 2 -23.786 12.84 27.127 0.65 17.42 ? N1 UXD 1501 A 1 HETATM 2 C C4 UXD . . . B 2 -19.693 14.421 26.939 0.65 18.04 ? C4 UXD 1501 A 1 HETATM 3 C C5 UXD . . . B 2 -21.923 12.62 25.867 0.65 16.42 ? C5 UXD 1501 A 1 HETATM 4 C C6 UXD . . . B 2 -22.482 13.196 27.037 0.65 17.07 ? C6 UXD 1501 A 1 HETATM 5 C C7 UXD . . . B 2 -22.952 11.883 25.282 0.65 17.27 ? C7 UXD 1501 A 1 HETATM 6 N N UXD . . . B 2 -19.626 13.624 25.687 0.65 16.94 ? N UXD 1501 A 1 HETATM 7 C C UXD . . . B 2 -20.607 12.779 25.208 0.65 15.99 ? C UXD 1501 A 1 HETATM 8 O O UXD . . . B 2 -20.372 12.17 24.157 0.65 14.45 ? O UXD 1501 A 1 HETATM 9 C C1 UXD . . . B 2 -18.462 13.982 24.898 0.65 18.39 ? C1 UXD 1501 A 1 HETATM 10 C C2 UXD . . . B 2 -18.161 15.393 25.36 0.65 19.08 ? C2 UXD 1501 A 1 HETATM 11 C C3 UXD . . . B 2 -18.471 15.317 26.851 0.65 19.04 ? C3 UXD 1501 A 1 HETATM 12 N N2 UXD . . . B 2 -24.066 12.061 26.072 0.65 17.81 ? N2 UXD 1501 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #