data_5RKU # _model_server_result.job_id sg6iR61_8Y5Y2uc3ZoBDQA _model_server_result.datetime_utc '2024-11-13 17:21:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKU # _exptl.entry_id 5RKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.21 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-cyclopropyl-1,3-benzodioxole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.13 _cell.angle_gamma 90 _cell.entry_id 5RKU _cell.length_a 81.77 _cell.length_b 27.29 _cell.length_c 55.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H11 N O3' _chem_comp.formula_weight 205.21 _chem_comp.id UXA _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-cyclopropyl-1,3-benzodioxole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 UXA sing 358 n n C2 C1 UXA sing 359 n n O C UXA doub 360 n n C3 C1 UXA sing 361 n n C1 N UXA sing 362 n n C5 C6 UXA doub 363 n y C5 C4 UXA sing 364 n y C N UXA sing 365 n n C C4 UXA sing 366 n n C6 C7 UXA sing 367 n y C4 C10 UXA doub 368 n y C7 C9 UXA doub 369 n y C7 O1 UXA sing 370 n n C10 C9 UXA sing 371 n y C9 O2 UXA sing 372 n n O1 C8 UXA sing 373 n n O2 C8 UXA sing 374 n n C5 H1 UXA sing 375 n n C6 H2 UXA sing 376 n n C8 H3 UXA sing 377 n n C10 H4 UXA sing 378 n n N H5 UXA sing 379 n n C1 H6 UXA sing 380 n n C2 H7 UXA sing 381 n n C2 H8 UXA sing 382 n n C3 H9 UXA sing 383 n n C3 H10 UXA sing 384 n n C8 H12 UXA sing 385 n n # _atom_sites.entry_id 5RKU _atom_sites.fract_transf_matrix[1][1] 0.012229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002185 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UXA A 1 1501 1501 UXA LIG . C 3 HOH A 1 1601 195 HOH HOH . C 3 HOH A 2 1602 45 HOH HOH . C 3 HOH A 3 1603 36 HOH HOH . C 3 HOH A 4 1604 89 HOH HOH . C 3 HOH A 5 1605 121 HOH HOH . C 3 HOH A 6 1606 85 HOH HOH . C 3 HOH A 7 1607 15 HOH HOH . C 3 HOH A 8 1608 204 HOH HOH . C 3 HOH A 9 1609 17 HOH HOH . C 3 HOH A 10 1610 187 HOH HOH . C 3 HOH A 11 1611 42 HOH HOH . C 3 HOH A 12 1612 41 HOH HOH . C 3 HOH A 13 1613 84 HOH HOH . C 3 HOH A 14 1614 124 HOH HOH . C 3 HOH A 15 1615 27 HOH HOH . C 3 HOH A 16 1616 183 HOH HOH . C 3 HOH A 17 1617 83 HOH HOH . C 3 HOH A 18 1618 160 HOH HOH . C 3 HOH A 19 1619 205 HOH HOH . C 3 HOH A 20 1620 94 HOH HOH . C 3 HOH A 21 1621 141 HOH HOH . C 3 HOH A 22 1622 33 HOH HOH . C 3 HOH A 23 1623 74 HOH HOH . C 3 HOH A 24 1624 10 HOH HOH . C 3 HOH A 25 1625 21 HOH HOH . C 3 HOH A 26 1626 28 HOH HOH . C 3 HOH A 27 1627 92 HOH HOH . C 3 HOH A 28 1628 135 HOH HOH . C 3 HOH A 29 1629 167 HOH HOH . C 3 HOH A 30 1630 31 HOH HOH . C 3 HOH A 31 1631 50 HOH HOH . C 3 HOH A 32 1632 60 HOH HOH . C 3 HOH A 33 1633 140 HOH HOH . C 3 HOH A 34 1634 25 HOH HOH . C 3 HOH A 35 1635 4 HOH HOH . C 3 HOH A 36 1636 182 HOH HOH . C 3 HOH A 37 1637 31 HOH HOH . C 3 HOH A 38 1638 20 HOH HOH . C 3 HOH A 39 1639 41 HOH HOH . C 3 HOH A 40 1640 45 HOH HOH . C 3 HOH A 41 1641 1 HOH HOH . C 3 HOH A 42 1642 54 HOH HOH . C 3 HOH A 43 1643 35 HOH HOH . C 3 HOH A 44 1644 191 HOH HOH . C 3 HOH A 45 1645 180 HOH HOH . C 3 HOH A 46 1646 36 HOH HOH . C 3 HOH A 47 1647 151 HOH HOH . C 3 HOH A 48 1648 26 HOH HOH . C 3 HOH A 49 1649 39 HOH HOH . C 3 HOH A 50 1650 16 HOH HOH . C 3 HOH A 51 1651 9 HOH HOH . C 3 HOH A 52 1652 37 HOH HOH . C 3 HOH A 53 1653 55 HOH HOH . C 3 HOH A 54 1654 139 HOH HOH . C 3 HOH A 55 1655 12 HOH HOH . C 3 HOH A 56 1656 12 HOH HOH . C 3 HOH A 57 1657 113 HOH HOH . C 3 HOH A 58 1658 35 HOH HOH . C 3 HOH A 59 1659 29 HOH HOH . C 3 HOH A 60 1660 14 HOH HOH . C 3 HOH A 61 1661 10 HOH HOH . C 3 HOH A 62 1662 43 HOH HOH . C 3 HOH A 63 1663 106 HOH HOH . C 3 HOH A 64 1664 44 HOH HOH . C 3 HOH A 65 1665 5 HOH HOH . C 3 HOH A 66 1666 3 HOH HOH . C 3 HOH A 67 1667 130 HOH HOH . C 3 HOH A 68 1668 77 HOH HOH . C 3 HOH A 69 1669 24 HOH HOH . C 3 HOH A 70 1670 65 HOH HOH . C 3 HOH A 71 1671 56 HOH HOH . C 3 HOH A 72 1672 38 HOH HOH . C 3 HOH A 73 1673 52 HOH HOH . C 3 HOH A 74 1674 119 HOH HOH . C 3 HOH A 75 1675 11 HOH HOH . C 3 HOH A 76 1676 6 HOH HOH . C 3 HOH A 77 1677 27 HOH HOH . C 3 HOH A 78 1678 28 HOH HOH . C 3 HOH A 79 1679 128 HOH HOH . C 3 HOH A 80 1680 70 HOH HOH . C 3 HOH A 81 1681 23 HOH HOH . C 3 HOH A 82 1682 64 HOH HOH . C 3 HOH A 83 1683 71 HOH HOH . C 3 HOH A 84 1684 19 HOH HOH . C 3 HOH A 85 1685 76 HOH HOH . C 3 HOH A 86 1686 174 HOH HOH . C 3 HOH A 87 1687 88 HOH HOH . C 3 HOH A 88 1688 75 HOH HOH . C 3 HOH A 89 1689 62 HOH HOH . C 3 HOH A 90 1690 69 HOH HOH . C 3 HOH A 91 1691 4 HOH HOH . C 3 HOH A 92 1692 6 HOH HOH . C 3 HOH A 93 1693 63 HOH HOH . C 3 HOH A 94 1694 116 HOH HOH . C 3 HOH A 95 1695 82 HOH HOH . C 3 HOH A 96 1696 15 HOH HOH . C 3 HOH A 97 1697 37 HOH HOH . C 3 HOH A 98 1698 150 HOH HOH . C 3 HOH A 99 1699 40 HOH HOH . C 3 HOH A 100 1700 108 HOH HOH . C 3 HOH A 101 1701 125 HOH HOH . C 3 HOH A 102 1702 67 HOH HOH . C 3 HOH A 103 1703 91 HOH HOH . C 3 HOH A 104 1704 22 HOH HOH . C 3 HOH A 105 1705 48 HOH HOH . C 3 HOH A 106 1706 43 HOH HOH . C 3 HOH A 107 1707 2 HOH HOH . C 3 HOH A 108 1708 181 HOH HOH . C 3 HOH A 109 1709 21 HOH HOH . C 3 HOH A 110 1710 18 HOH HOH . C 3 HOH A 111 1711 81 HOH HOH . C 3 HOH A 112 1712 86 HOH HOH . C 3 HOH A 113 1713 57 HOH HOH . C 3 HOH A 114 1714 20 HOH HOH . C 3 HOH A 115 1715 154 HOH HOH . C 3 HOH A 116 1716 39 HOH HOH . C 3 HOH A 117 1717 24 HOH HOH . C 3 HOH A 118 1718 53 HOH HOH . C 3 HOH A 119 1719 22 HOH HOH . C 3 HOH A 120 1720 2 HOH HOH . C 3 HOH A 121 1721 49 HOH HOH . C 3 HOH A 122 1722 80 HOH HOH . C 3 HOH A 123 1723 38 HOH HOH . C 3 HOH A 124 1724 129 HOH HOH . C 3 HOH A 125 1725 206 HOH HOH . C 3 HOH A 126 1726 137 HOH HOH . C 3 HOH A 127 1727 145 HOH HOH . C 3 HOH A 128 1728 158 HOH HOH . C 3 HOH A 129 1729 101 HOH HOH . C 3 HOH A 130 1730 136 HOH HOH . C 3 HOH A 131 1731 96 HOH HOH . C 3 HOH A 132 1732 40 HOH HOH . C 3 HOH A 133 1733 163 HOH HOH . C 3 HOH A 134 1734 134 HOH HOH . C 3 HOH A 135 1735 16 HOH HOH . C 3 HOH A 136 1736 118 HOH HOH . C 3 HOH A 137 1737 34 HOH HOH . C 3 HOH A 138 1738 90 HOH HOH . C 3 HOH A 139 1739 109 HOH HOH . C 3 HOH A 140 1740 13 HOH HOH . C 3 HOH A 141 1741 95 HOH HOH . C 3 HOH A 142 1742 30 HOH HOH . C 3 HOH A 143 1743 34 HOH HOH . C 3 HOH A 144 1744 126 HOH HOH . C 3 HOH A 145 1745 72 HOH HOH . C 3 HOH A 146 1746 153 HOH HOH . C 3 HOH A 147 1747 175 HOH HOH . C 3 HOH A 148 1748 123 HOH HOH . C 3 HOH A 149 1749 32 HOH HOH . C 3 HOH A 150 1750 44 HOH HOH . C 3 HOH A 151 1751 120 HOH HOH . C 3 HOH A 152 1752 164 HOH HOH . C 3 HOH A 153 1753 26 HOH HOH . C 3 HOH A 154 1754 172 HOH HOH . C 3 HOH A 155 1755 117 HOH HOH . C 3 HOH A 156 1756 157 HOH HOH . C 3 HOH A 157 1757 29 HOH HOH . C 3 HOH A 158 1758 30 HOH HOH . C 3 HOH A 159 1759 199 HOH HOH . C 3 HOH A 160 1760 166 HOH HOH . C 3 HOH A 161 1761 185 HOH HOH . C 3 HOH A 162 1762 5 HOH HOH . C 3 HOH A 163 1763 8 HOH HOH . C 3 HOH A 164 1764 18 HOH HOH . C 3 HOH A 165 1765 115 HOH HOH . C 3 HOH A 166 1766 25 HOH HOH . C 3 HOH A 167 1767 114 HOH HOH . C 3 HOH A 168 1768 46 HOH HOH . C 3 HOH A 169 1769 17 HOH HOH . C 3 HOH A 170 1770 107 HOH HOH . C 3 HOH A 171 1771 1 HOH HOH . C 3 HOH A 172 1772 11 HOH HOH . C 3 HOH A 173 1773 42 HOH HOH . C 3 HOH A 174 1774 33 HOH HOH . C 3 HOH A 175 1775 186 HOH HOH . C 3 HOH A 176 1776 133 HOH HOH . C 3 HOH A 177 1777 156 HOH HOH . C 3 HOH A 178 1778 8 HOH HOH . C 3 HOH A 179 1779 61 HOH HOH . C 3 HOH A 180 1780 9 HOH HOH . C 3 HOH A 181 1781 190 HOH HOH . C 3 HOH A 182 1782 51 HOH HOH . C 3 HOH A 183 1783 112 HOH HOH . C 3 HOH A 184 1784 170 HOH HOH . C 3 HOH A 185 1785 132 HOH HOH . C 3 HOH A 186 1786 13 HOH HOH . C 3 HOH A 187 1787 14 HOH HOH . C 3 HOH A 188 1788 188 HOH HOH . C 3 HOH A 189 1789 110 HOH HOH . C 3 HOH A 190 1790 78 HOH HOH . C 3 HOH A 191 1791 198 HOH HOH . C 3 HOH A 192 1792 46 HOH HOH . C 3 HOH A 193 1793 102 HOH HOH . C 3 HOH A 194 1794 168 HOH HOH . C 3 HOH A 195 1795 68 HOH HOH . C 3 HOH A 196 1796 103 HOH HOH . C 3 HOH A 197 1797 201 HOH HOH . C 3 HOH A 198 1798 73 HOH HOH . C 3 HOH A 199 1799 196 HOH HOH . C 3 HOH A 200 1800 19 HOH HOH . C 3 HOH A 201 1801 200 HOH HOH . C 3 HOH A 202 1802 7 HOH HOH . C 3 HOH A 203 1803 23 HOH HOH . C 3 HOH A 204 1804 192 HOH HOH . C 3 HOH A 205 1805 3 HOH HOH . C 3 HOH A 206 1806 111 HOH HOH . C 3 HOH A 207 1807 189 HOH HOH . C 3 HOH A 208 1808 97 HOH HOH . C 3 HOH A 209 1809 87 HOH HOH . C 3 HOH A 210 1810 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 UXA . . . B 2 -21.724 12.552 26.535 1 41.3 ? C4 UXA 1501 A 1 HETATM 2 C C5 UXA . . . B 2 -22.823 12.043 25.822 1 41.47 ? C5 UXA 1501 A 1 HETATM 3 C C6 UXA . . . B 2 -24.11 12.136 26.331 1 41.56 ? C6 UXA 1501 A 1 HETATM 4 C C7 UXA . . . B 2 -24.272 12.719 27.58 1 41.76 ? C7 UXA 1501 A 1 HETATM 5 C C8 UXA . . . B 2 -25.033 13.533 29.52 1 42.58 ? C8 UXA 1501 A 1 HETATM 6 C C10 UXA . . . B 2 -21.916 13.106 27.8 1 41.6 ? C10 UXA 1501 A 1 HETATM 7 N N UXA . . . B 2 -19.59 13.661 26.37 1 41.14 ? N UXA 1501 A 1 HETATM 8 C C UXA . . . B 2 -20.362 12.657 25.924 1 41.06 ? C UXA 1501 A 1 HETATM 9 O O UXA . . . B 2 -19.997 11.89 25.034 1 40.27 ? O UXA 1501 A 1 HETATM 10 C C1 UXA . . . B 2 -18.321 14.009 25.736 1 40.96 ? C1 UXA 1501 A 1 HETATM 11 C C2 UXA . . . B 2 -17.931 15.438 25.672 1 40.98 ? C2 UXA 1501 A 1 HETATM 12 C C3 UXA . . . B 2 -18.353 14.723 24.438 1 40.66 ? C3 UXA 1501 A 1 HETATM 13 C C9 UXA . . . B 2 -23.197 13.183 28.297 1 41.84 ? C9 UXA 1501 A 1 HETATM 14 O O1 UXA . . . B 2 -25.435 12.932 28.285 1 42.28 ? O1 UXA 1501 A 1 HETATM 15 O O2 UXA . . . B 2 -23.62 13.743 29.481 1 42.29 ? O2 UXA 1501 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #