data_5RLA # _model_server_result.job_id nllzK4-g9hF_H5VLEnLudw _model_server_result.datetime_utc '2024-10-14 04:24:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 5RLA # _exptl.entry_id 5RLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5RLA _cell.length_a 88.9 _cell.length_b 88.9 _cell.length_c 105.1 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 124 A ASP 124 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A ND1 HIS 126 A HIS 126 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 A OD2 ASP 232 A ASP 232 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 A OD2 ASP 234 A ASP 234 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 A OD1 ASP 234 A ASP 234 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc6 D MN MN . A MN 500 1_555 G O HOH . A HOH 543 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc7 B OD1 ASP 124 B ASP 124 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc8 B ND1 HIS 126 B HIS 126 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc9 B OD2 ASP 232 B ASP 232 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 B OD2 ASP 234 B ASP 234 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 B OD1 ASP 234 B ASP 234 1_555 E MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc12 C OD1 ASP 124 C ASP 124 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc13 C ND1 HIS 126 C HIS 126 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc14 C OD2 ASP 232 C ASP 232 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc15 C OD2 ASP 234 C ASP 234 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc16 C OD1 ASP 234 C ASP 234 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5RLA _atom_sites.fract_transf_matrix[1][1] 0.011249 _atom_sites.fract_transf_matrix[1][2] 0.006494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MN A 1 500 500 MN MN . E 2 MN B 1 501 501 MN MN . F 2 MN C 1 502 502 MN MN . G 3 HOH A 1 501 7 HOH HOH . G 3 HOH A 2 502 12 HOH HOH . G 3 HOH A 3 503 17 HOH HOH . G 3 HOH A 4 504 20 HOH HOH . G 3 HOH A 5 505 30 HOH HOH . G 3 HOH A 6 506 31 HOH HOH . G 3 HOH A 7 507 32 HOH HOH . G 3 HOH A 8 508 33 HOH HOH . G 3 HOH A 9 509 34 HOH HOH . G 3 HOH A 10 510 35 HOH HOH . G 3 HOH A 11 511 36 HOH HOH . G 3 HOH A 12 512 37 HOH HOH . G 3 HOH A 13 513 40 HOH HOH . G 3 HOH A 14 514 41 HOH HOH . G 3 HOH A 15 515 42 HOH HOH . G 3 HOH A 16 516 1 HOH HOH . G 3 HOH A 17 517 2 HOH HOH . G 3 HOH A 18 518 3 HOH HOH . G 3 HOH A 19 519 4 HOH HOH . G 3 HOH A 20 520 5 HOH HOH . G 3 HOH A 21 521 10 HOH HOH . G 3 HOH A 22 522 13 HOH HOH . G 3 HOH A 23 523 14 HOH HOH . G 3 HOH A 24 524 15 HOH HOH . G 3 HOH A 25 525 16 HOH HOH . G 3 HOH A 26 526 19 HOH HOH . G 3 HOH A 27 527 21 HOH HOH . G 3 HOH A 28 528 22 HOH HOH . G 3 HOH A 29 529 23 HOH HOH . G 3 HOH A 30 530 24 HOH HOH . G 3 HOH A 31 531 25 HOH HOH . G 3 HOH A 32 532 26 HOH HOH . G 3 HOH A 33 533 27 HOH HOH . G 3 HOH A 34 534 38 HOH HOH . G 3 HOH A 35 535 43 HOH HOH . G 3 HOH A 36 536 44 HOH HOH . G 3 HOH A 37 537 6 HOH HOH . G 3 HOH A 38 538 8 HOH HOH . G 3 HOH A 39 539 9 HOH HOH . G 3 HOH A 40 540 11 HOH HOH . G 3 HOH A 41 541 28 HOH HOH . G 3 HOH A 42 542 29 HOH HOH . G 3 HOH A 43 543 39 HOH HOH . G 3 HOH A 44 544 45 HOH HOH . G 3 HOH A 45 545 46 HOH HOH . H 3 HOH B 1 502 18 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 51.91 _atom_site.Cartn_y 17.791 _atom_site.Cartn_z 3.048 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 583 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #