data_5RPC # _model_server_result.job_id pezb18BCDbhrrN2mQCxhEw _model_server_result.datetime_utc '2024-11-13 04:53:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5RPC # _exptl.entry_id 5RPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-carbamoyl-L-methionine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RPC _cell.length_a 67.96 _cell.length_b 67.96 _cell.length_c 102.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C6 H12 N2 O3 S' _chem_comp.formula_weight 192.236 _chem_comp.id W9J _chem_comp.mon_nstd_flag . _chem_comp.name N-carbamoyl-L-methionine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NT CT W9J sing 376 n n CE SD W9J sing 377 n n CG SD W9J sing 378 n n CG CB W9J sing 379 n n CT N W9J sing 380 n n CT OT W9J doub 381 n n N CA W9J sing 382 n n CB CA W9J sing 383 n n CA C W9J sing 384 n n O C W9J doub 385 n n C OXT W9J sing 386 n n NT H1 W9J sing 387 n n NT H2 W9J sing 388 n n N H3 W9J sing 389 n n CA H4 W9J sing 390 n n CB H5 W9J sing 391 n n CB H6 W9J sing 392 n n CG H7 W9J sing 393 n n CG H8 W9J sing 394 n n CE H9 W9J sing 395 n n CE H10 W9J sing 396 n n CE H11 W9J sing 397 n n OXT H12 W9J sing 398 n n # _atom_sites.entry_id 5RPC _atom_sites.fract_transf_matrix[1][1] 0.014715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W9J A 1 301 301 W9J W9J . C 3 HOH A 1 401 243 HOH HOH . C 3 HOH A 2 402 16 HOH HOH . C 3 HOH A 3 403 129 HOH HOH . C 3 HOH A 4 404 9 HOH HOH . C 3 HOH A 5 405 192 HOH HOH . C 3 HOH A 6 406 154 HOH HOH . C 3 HOH A 7 407 80 HOH HOH . C 3 HOH A 8 408 56 HOH HOH . C 3 HOH A 9 409 170 HOH HOH . C 3 HOH A 10 410 227 HOH HOH . C 3 HOH A 11 411 161 HOH HOH . C 3 HOH A 12 412 159 HOH HOH . C 3 HOH A 13 413 121 HOH HOH . C 3 HOH A 14 414 204 HOH HOH . C 3 HOH A 15 415 216 HOH HOH . C 3 HOH A 16 416 74 HOH HOH . C 3 HOH A 17 417 54 HOH HOH . C 3 HOH A 18 418 263 HOH HOH . C 3 HOH A 19 419 66 HOH HOH . C 3 HOH A 20 420 181 HOH HOH . C 3 HOH A 21 421 89 HOH HOH . C 3 HOH A 22 422 205 HOH HOH . C 3 HOH A 23 423 114 HOH HOH . C 3 HOH A 24 424 214 HOH HOH . C 3 HOH A 25 425 38 HOH HOH . C 3 HOH A 26 426 59 HOH HOH . C 3 HOH A 27 427 139 HOH HOH . C 3 HOH A 28 428 257 HOH HOH . C 3 HOH A 29 429 125 HOH HOH . C 3 HOH A 30 430 194 HOH HOH . C 3 HOH A 31 431 117 HOH HOH . C 3 HOH A 32 432 253 HOH HOH . C 3 HOH A 33 433 72 HOH HOH . C 3 HOH A 34 434 40 HOH HOH . C 3 HOH A 35 435 51 HOH HOH . C 3 HOH A 36 436 82 HOH HOH . C 3 HOH A 37 437 69 HOH HOH . C 3 HOH A 38 438 150 HOH HOH . C 3 HOH A 39 439 163 HOH HOH . C 3 HOH A 40 440 106 HOH HOH . C 3 HOH A 41 441 64 HOH HOH . C 3 HOH A 42 442 162 HOH HOH . C 3 HOH A 43 443 15 HOH HOH . C 3 HOH A 44 444 206 HOH HOH . C 3 HOH A 45 445 135 HOH HOH . C 3 HOH A 46 446 146 HOH HOH . C 3 HOH A 47 447 144 HOH HOH . C 3 HOH A 48 448 94 HOH HOH . C 3 HOH A 49 449 23 HOH HOH . C 3 HOH A 50 450 63 HOH HOH . C 3 HOH A 51 451 12 HOH HOH . C 3 HOH A 52 452 143 HOH HOH . C 3 HOH A 53 453 32 HOH HOH . C 3 HOH A 54 454 193 HOH HOH . C 3 HOH A 55 455 190 HOH HOH . C 3 HOH A 56 456 266 HOH HOH . C 3 HOH A 57 457 44 HOH HOH . C 3 HOH A 58 458 62 HOH HOH . C 3 HOH A 59 459 207 HOH HOH . C 3 HOH A 60 460 99 HOH HOH . C 3 HOH A 61 461 46 HOH HOH . C 3 HOH A 62 462 173 HOH HOH . C 3 HOH A 63 463 93 HOH HOH . C 3 HOH A 64 464 149 HOH HOH . C 3 HOH A 65 465 234 HOH HOH . C 3 HOH A 66 466 128 HOH HOH . C 3 HOH A 67 467 172 HOH HOH . C 3 HOH A 68 468 65 HOH HOH . C 3 HOH A 69 469 166 HOH HOH . C 3 HOH A 70 470 58 HOH HOH . C 3 HOH A 71 471 4 HOH HOH . C 3 HOH A 72 472 35 HOH HOH . C 3 HOH A 73 473 137 HOH HOH . C 3 HOH A 74 474 11 HOH HOH . C 3 HOH A 75 475 45 HOH HOH . C 3 HOH A 76 476 132 HOH HOH . C 3 HOH A 77 477 141 HOH HOH . C 3 HOH A 78 478 29 HOH HOH . C 3 HOH A 79 479 8 HOH HOH . C 3 HOH A 80 480 5 HOH HOH . C 3 HOH A 81 481 68 HOH HOH . C 3 HOH A 82 482 33 HOH HOH . C 3 HOH A 83 483 21 HOH HOH . C 3 HOH A 84 484 18 HOH HOH . C 3 HOH A 85 485 208 HOH HOH . C 3 HOH A 86 486 91 HOH HOH . C 3 HOH A 87 487 226 HOH HOH . C 3 HOH A 88 488 130 HOH HOH . C 3 HOH A 89 489 254 HOH HOH . C 3 HOH A 90 490 223 HOH HOH . C 3 HOH A 91 491 249 HOH HOH . C 3 HOH A 92 492 262 HOH HOH . C 3 HOH A 93 493 86 HOH HOH . C 3 HOH A 94 494 3 HOH HOH . C 3 HOH A 95 495 88 HOH HOH . C 3 HOH A 96 496 47 HOH HOH . C 3 HOH A 97 497 48 HOH HOH . C 3 HOH A 98 498 6 HOH HOH . C 3 HOH A 99 499 71 HOH HOH . C 3 HOH A 100 500 42 HOH HOH . C 3 HOH A 101 501 98 HOH HOH . C 3 HOH A 102 502 134 HOH HOH . C 3 HOH A 103 503 22 HOH HOH . C 3 HOH A 104 504 26 HOH HOH . C 3 HOH A 105 505 157 HOH HOH . C 3 HOH A 106 506 14 HOH HOH . C 3 HOH A 107 507 7 HOH HOH . C 3 HOH A 108 508 104 HOH HOH . C 3 HOH A 109 509 37 HOH HOH . C 3 HOH A 110 510 1 HOH HOH . C 3 HOH A 111 511 60 HOH HOH . C 3 HOH A 112 512 239 HOH HOH . C 3 HOH A 113 513 36 HOH HOH . C 3 HOH A 114 514 49 HOH HOH . C 3 HOH A 115 515 50 HOH HOH . C 3 HOH A 116 516 20 HOH HOH . C 3 HOH A 117 517 156 HOH HOH . C 3 HOH A 118 518 24 HOH HOH . C 3 HOH A 119 519 17 HOH HOH . C 3 HOH A 120 520 267 HOH HOH . C 3 HOH A 121 521 120 HOH HOH . C 3 HOH A 122 522 238 HOH HOH . C 3 HOH A 123 523 25 HOH HOH . C 3 HOH A 124 524 27 HOH HOH . C 3 HOH A 125 525 75 HOH HOH . C 3 HOH A 126 526 73 HOH HOH . C 3 HOH A 127 527 177 HOH HOH . C 3 HOH A 128 528 31 HOH HOH . C 3 HOH A 129 529 152 HOH HOH . C 3 HOH A 130 530 140 HOH HOH . C 3 HOH A 131 531 19 HOH HOH . C 3 HOH A 132 532 10 HOH HOH . C 3 HOH A 133 533 85 HOH HOH . C 3 HOH A 134 534 84 HOH HOH . C 3 HOH A 135 535 116 HOH HOH . C 3 HOH A 136 536 240 HOH HOH . C 3 HOH A 137 537 109 HOH HOH . C 3 HOH A 138 538 147 HOH HOH . C 3 HOH A 139 539 53 HOH HOH . C 3 HOH A 140 540 127 HOH HOH . C 3 HOH A 141 541 186 HOH HOH . C 3 HOH A 142 542 2 HOH HOH . C 3 HOH A 143 543 77 HOH HOH . C 3 HOH A 144 544 131 HOH HOH . C 3 HOH A 145 545 39 HOH HOH . C 3 HOH A 146 546 229 HOH HOH . C 3 HOH A 147 547 138 HOH HOH . C 3 HOH A 148 548 30 HOH HOH . C 3 HOH A 149 549 119 HOH HOH . C 3 HOH A 150 550 217 HOH HOH . C 3 HOH A 151 551 28 HOH HOH . C 3 HOH A 152 552 233 HOH HOH . C 3 HOH A 153 553 13 HOH HOH . C 3 HOH A 154 554 112 HOH HOH . C 3 HOH A 155 555 118 HOH HOH . C 3 HOH A 156 556 196 HOH HOH . C 3 HOH A 157 557 67 HOH HOH . C 3 HOH A 158 558 155 HOH HOH . C 3 HOH A 159 559 220 HOH HOH . C 3 HOH A 160 560 122 HOH HOH . C 3 HOH A 161 561 168 HOH HOH . C 3 HOH A 162 562 251 HOH HOH . C 3 HOH A 163 563 110 HOH HOH . C 3 HOH A 164 564 188 HOH HOH . C 3 HOH A 165 565 100 HOH HOH . C 3 HOH A 166 566 101 HOH HOH . C 3 HOH A 167 567 160 HOH HOH . C 3 HOH A 168 568 203 HOH HOH . C 3 HOH A 169 569 151 HOH HOH . C 3 HOH A 170 570 248 HOH HOH . C 3 HOH A 171 571 174 HOH HOH . C 3 HOH A 172 572 55 HOH HOH . C 3 HOH A 173 573 78 HOH HOH . C 3 HOH A 174 574 241 HOH HOH . C 3 HOH A 175 575 41 HOH HOH . C 3 HOH A 176 576 202 HOH HOH . C 3 HOH A 177 577 123 HOH HOH . C 3 HOH A 178 578 225 HOH HOH . C 3 HOH A 179 579 95 HOH HOH . C 3 HOH A 180 580 247 HOH HOH . C 3 HOH A 181 581 52 HOH HOH . C 3 HOH A 182 582 145 HOH HOH . C 3 HOH A 183 583 61 HOH HOH . C 3 HOH A 184 584 34 HOH HOH . C 3 HOH A 185 585 210 HOH HOH . C 3 HOH A 186 586 167 HOH HOH . C 3 HOH A 187 587 169 HOH HOH . C 3 HOH A 188 588 201 HOH HOH . C 3 HOH A 189 589 212 HOH HOH . C 3 HOH A 190 590 70 HOH HOH . C 3 HOH A 191 591 76 HOH HOH . C 3 HOH A 192 592 133 HOH HOH . C 3 HOH A 193 593 57 HOH HOH . C 3 HOH A 194 594 265 HOH HOH . C 3 HOH A 195 595 211 HOH HOH . C 3 HOH A 196 596 96 HOH HOH . C 3 HOH A 197 597 250 HOH HOH . C 3 HOH A 198 598 103 HOH HOH . C 3 HOH A 199 599 148 HOH HOH . C 3 HOH A 200 600 164 HOH HOH . C 3 HOH A 201 601 184 HOH HOH . C 3 HOH A 202 602 105 HOH HOH . C 3 HOH A 203 603 83 HOH HOH . C 3 HOH A 204 604 244 HOH HOH . C 3 HOH A 205 605 228 HOH HOH . C 3 HOH A 206 606 43 HOH HOH . C 3 HOH A 207 607 142 HOH HOH . C 3 HOH A 208 608 97 HOH HOH . C 3 HOH A 209 609 256 HOH HOH . C 3 HOH A 210 610 108 HOH HOH . C 3 HOH A 211 611 176 HOH HOH . C 3 HOH A 212 612 124 HOH HOH . C 3 HOH A 213 613 246 HOH HOH . C 3 HOH A 214 614 185 HOH HOH . C 3 HOH A 215 615 245 HOH HOH . C 3 HOH A 216 616 90 HOH HOH . C 3 HOH A 217 617 191 HOH HOH . C 3 HOH A 218 618 187 HOH HOH . C 3 HOH A 219 619 179 HOH HOH . C 3 HOH A 220 620 213 HOH HOH . C 3 HOH A 221 621 255 HOH HOH . C 3 HOH A 222 622 252 HOH HOH . C 3 HOH A 223 623 237 HOH HOH . C 3 HOH A 224 624 219 HOH HOH . C 3 HOH A 225 625 200 HOH HOH . C 3 HOH A 226 626 182 HOH HOH . C 3 HOH A 227 627 136 HOH HOH . C 3 HOH A 228 628 92 HOH HOH . C 3 HOH A 229 629 87 HOH HOH . C 3 HOH A 230 630 209 HOH HOH . C 3 HOH A 231 631 175 HOH HOH . C 3 HOH A 232 632 183 HOH HOH . C 3 HOH A 233 633 224 HOH HOH . C 3 HOH A 234 634 264 HOH HOH . C 3 HOH A 235 635 81 HOH HOH . C 3 HOH A 236 636 178 HOH HOH . C 3 HOH A 237 637 158 HOH HOH . C 3 HOH A 238 638 107 HOH HOH . C 3 HOH A 239 639 232 HOH HOH . C 3 HOH A 240 640 79 HOH HOH . C 3 HOH A 241 641 102 HOH HOH . C 3 HOH A 242 642 221 HOH HOH . C 3 HOH A 243 643 198 HOH HOH . C 3 HOH A 244 644 215 HOH HOH . C 3 HOH A 245 645 153 HOH HOH . C 3 HOH A 246 646 195 HOH HOH . C 3 HOH A 247 647 199 HOH HOH . C 3 HOH A 248 648 115 HOH HOH . C 3 HOH A 249 649 260 HOH HOH . C 3 HOH A 250 650 235 HOH HOH . C 3 HOH A 251 651 230 HOH HOH . C 3 HOH A 252 652 258 HOH HOH . C 3 HOH A 253 653 171 HOH HOH . C 3 HOH A 254 654 259 HOH HOH . C 3 HOH A 255 655 189 HOH HOH . C 3 HOH A 256 656 111 HOH HOH . C 3 HOH A 257 657 113 HOH HOH . C 3 HOH A 258 658 268 HOH HOH . C 3 HOH A 259 659 165 HOH HOH . C 3 HOH A 260 660 231 HOH HOH . C 3 HOH A 261 661 180 HOH HOH . C 3 HOH A 262 662 218 HOH HOH . C 3 HOH A 263 663 236 HOH HOH . C 3 HOH A 264 664 261 HOH HOH . C 3 HOH A 265 665 197 HOH HOH . C 3 HOH A 266 666 222 HOH HOH . C 3 HOH A 267 667 126 HOH HOH . C 3 HOH A 268 668 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NT W9J . L . B 2 62.301 61.199 22.74 0.72 9.46 ? NT W9J 301 A 1 HETATM 2 C CT W9J . L . B 2 61.97 61.719 23.838 0.72 12.74 ? CT W9J 301 A 1 HETATM 3 O OT W9J . L . B 2 62.74 61.782 24.74 0.72 15.39 ? OT W9J 301 A 1 HETATM 4 N N W9J . L . B 2 60.636 62.254 24 0.72 14.43 ? N W9J 301 A 1 HETATM 5 C CA W9J . L . B 2 60.192 62.85 25.245 0.72 14.39 ? CA W9J 301 A 1 HETATM 6 C CB W9J . L . B 2 58.8 63.44 25.031 0.72 13.55 ? CB W9J 301 A 1 HETATM 7 C CG W9J . L . B 2 58.669 64.364 23.815 0.72 15.37 ? CG W9J 301 A 1 HETATM 8 S SD W9J . L . B 2 57.086 65.252 23.952 0.72 22.99 ? SD W9J 301 A 1 HETATM 9 C CE W9J . L . B 2 57.148 66.905 23.198 0.72 27.76 ? CE W9J 301 A 1 HETATM 10 C C W9J . L . B 2 60.075 61.755 26.308 0.72 14.38 ? C W9J 301 A 1 HETATM 11 O O W9J . L . B 2 59.891 60.557 25.962 0.72 7.94 ? O W9J 301 A 1 HETATM 12 O OXT W9J . L . B 2 60.14 62.039 27.535 0.72 22.95 ? OXT W9J 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #