data_5RPF # _model_server_result.job_id rfZITzzwsVYzDo9QL_Mxiw _model_server_result.datetime_utc '2024-11-13 04:46:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5RPF # _exptl.entry_id 5RPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RPF _cell.length_a 68.02 _cell.length_b 68.02 _cell.length_c 104.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 5RPF _atom_sites.fract_transf_matrix[1][1] 0.014702 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1001 1001 SO4 SO4 . C 3 HOH A 1 1101 52 HOH HOH . C 3 HOH A 2 1102 38 HOH HOH . C 3 HOH A 3 1103 132 HOH HOH . C 3 HOH A 4 1104 90 HOH HOH . C 3 HOH A 5 1105 48 HOH HOH . C 3 HOH A 6 1106 140 HOH HOH . C 3 HOH A 7 1107 41 HOH HOH . C 3 HOH A 8 1108 35 HOH HOH . C 3 HOH A 9 1109 122 HOH HOH . C 3 HOH A 10 1110 72 HOH HOH . C 3 HOH A 11 1111 121 HOH HOH . C 3 HOH A 12 1112 74 HOH HOH . C 3 HOH A 13 1113 97 HOH HOH . C 3 HOH A 14 1114 58 HOH HOH . C 3 HOH A 15 1115 112 HOH HOH . C 3 HOH A 16 1116 29 HOH HOH . C 3 HOH A 17 1117 1 HOH HOH . C 3 HOH A 18 1118 95 HOH HOH . C 3 HOH A 19 1119 32 HOH HOH . C 3 HOH A 20 1120 17 HOH HOH . C 3 HOH A 21 1121 16 HOH HOH . C 3 HOH A 22 1122 124 HOH HOH . C 3 HOH A 23 1123 5 HOH HOH . C 3 HOH A 24 1124 129 HOH HOH . C 3 HOH A 25 1125 24 HOH HOH . C 3 HOH A 26 1126 79 HOH HOH . C 3 HOH A 27 1127 88 HOH HOH . C 3 HOH A 28 1128 18 HOH HOH . C 3 HOH A 29 1129 10 HOH HOH . C 3 HOH A 30 1130 36 HOH HOH . C 3 HOH A 31 1131 61 HOH HOH . C 3 HOH A 32 1132 73 HOH HOH . C 3 HOH A 33 1133 25 HOH HOH . C 3 HOH A 34 1134 49 HOH HOH . C 3 HOH A 35 1135 98 HOH HOH . C 3 HOH A 36 1136 107 HOH HOH . C 3 HOH A 37 1137 84 HOH HOH . C 3 HOH A 38 1138 6 HOH HOH . C 3 HOH A 39 1139 7 HOH HOH . C 3 HOH A 40 1140 128 HOH HOH . C 3 HOH A 41 1141 4 HOH HOH . C 3 HOH A 42 1142 20 HOH HOH . C 3 HOH A 43 1143 80 HOH HOH . C 3 HOH A 44 1144 45 HOH HOH . C 3 HOH A 45 1145 46 HOH HOH . C 3 HOH A 46 1146 22 HOH HOH . C 3 HOH A 47 1147 40 HOH HOH . C 3 HOH A 48 1148 50 HOH HOH . C 3 HOH A 49 1149 69 HOH HOH . C 3 HOH A 50 1150 27 HOH HOH . C 3 HOH A 51 1151 105 HOH HOH . C 3 HOH A 52 1152 12 HOH HOH . C 3 HOH A 53 1153 66 HOH HOH . C 3 HOH A 54 1154 42 HOH HOH . C 3 HOH A 55 1155 57 HOH HOH . C 3 HOH A 56 1156 47 HOH HOH . C 3 HOH A 57 1157 109 HOH HOH . C 3 HOH A 58 1158 3 HOH HOH . C 3 HOH A 59 1159 14 HOH HOH . C 3 HOH A 60 1160 138 HOH HOH . C 3 HOH A 61 1161 13 HOH HOH . C 3 HOH A 62 1162 39 HOH HOH . C 3 HOH A 63 1163 8 HOH HOH . C 3 HOH A 64 1164 106 HOH HOH . C 3 HOH A 65 1165 91 HOH HOH . C 3 HOH A 66 1166 44 HOH HOH . C 3 HOH A 67 1167 60 HOH HOH . C 3 HOH A 68 1168 70 HOH HOH . C 3 HOH A 69 1169 43 HOH HOH . C 3 HOH A 70 1170 21 HOH HOH . C 3 HOH A 71 1171 139 HOH HOH . C 3 HOH A 72 1172 15 HOH HOH . C 3 HOH A 73 1173 23 HOH HOH . C 3 HOH A 74 1174 19 HOH HOH . C 3 HOH A 75 1175 86 HOH HOH . C 3 HOH A 76 1176 100 HOH HOH . C 3 HOH A 77 1177 135 HOH HOH . C 3 HOH A 78 1178 11 HOH HOH . C 3 HOH A 79 1179 113 HOH HOH . C 3 HOH A 80 1180 92 HOH HOH . C 3 HOH A 81 1181 62 HOH HOH . C 3 HOH A 82 1182 30 HOH HOH . C 3 HOH A 83 1183 37 HOH HOH . C 3 HOH A 84 1184 71 HOH HOH . C 3 HOH A 85 1185 93 HOH HOH . C 3 HOH A 86 1186 68 HOH HOH . C 3 HOH A 87 1187 77 HOH HOH . C 3 HOH A 88 1188 89 HOH HOH . C 3 HOH A 89 1189 137 HOH HOH . C 3 HOH A 90 1190 31 HOH HOH . C 3 HOH A 91 1191 2 HOH HOH . C 3 HOH A 92 1192 81 HOH HOH . C 3 HOH A 93 1193 56 HOH HOH . C 3 HOH A 94 1194 82 HOH HOH . C 3 HOH A 95 1195 119 HOH HOH . C 3 HOH A 96 1196 51 HOH HOH . C 3 HOH A 97 1197 28 HOH HOH . C 3 HOH A 98 1198 102 HOH HOH . C 3 HOH A 99 1199 76 HOH HOH . C 3 HOH A 100 1200 26 HOH HOH . C 3 HOH A 101 1201 104 HOH HOH . C 3 HOH A 102 1202 108 HOH HOH . C 3 HOH A 103 1203 123 HOH HOH . C 3 HOH A 104 1204 65 HOH HOH . C 3 HOH A 105 1205 87 HOH HOH . C 3 HOH A 106 1206 136 HOH HOH . C 3 HOH A 107 1207 9 HOH HOH . C 3 HOH A 108 1208 133 HOH HOH . C 3 HOH A 109 1209 54 HOH HOH . C 3 HOH A 110 1210 114 HOH HOH . C 3 HOH A 111 1211 55 HOH HOH . C 3 HOH A 112 1212 103 HOH HOH . C 3 HOH A 113 1213 53 HOH HOH . C 3 HOH A 114 1214 94 HOH HOH . C 3 HOH A 115 1215 63 HOH HOH . C 3 HOH A 116 1216 64 HOH HOH . C 3 HOH A 117 1217 33 HOH HOH . C 3 HOH A 118 1218 110 HOH HOH . C 3 HOH A 119 1219 116 HOH HOH . C 3 HOH A 120 1220 34 HOH HOH . C 3 HOH A 121 1221 134 HOH HOH . C 3 HOH A 122 1222 125 HOH HOH . C 3 HOH A 123 1223 118 HOH HOH . C 3 HOH A 124 1224 85 HOH HOH . C 3 HOH A 125 1225 120 HOH HOH . C 3 HOH A 126 1226 115 HOH HOH . C 3 HOH A 127 1227 59 HOH HOH . C 3 HOH A 128 1228 131 HOH HOH . C 3 HOH A 129 1229 75 HOH HOH . C 3 HOH A 130 1230 78 HOH HOH . C 3 HOH A 131 1231 130 HOH HOH . C 3 HOH A 132 1232 127 HOH HOH . C 3 HOH A 133 1233 83 HOH HOH . C 3 HOH A 134 1234 96 HOH HOH . C 3 HOH A 135 1235 117 HOH HOH . C 3 HOH A 136 1236 111 HOH HOH . C 3 HOH A 137 1237 126 HOH HOH . C 3 HOH A 138 1238 67 HOH HOH . C 3 HOH A 139 1239 101 HOH HOH . C 3 HOH A 140 1240 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 60.836 61.218 27.458 1 22.52 ? S SO4 1001 A 1 HETATM 2 O O1 SO4 . . . B 2 59.854 60.331 26.847 1 21.61 ? O1 SO4 1001 A 1 HETATM 3 O O2 SO4 . . . B 2 62.133 60.964 26.819 1 22.59 ? O2 SO4 1001 A 1 HETATM 4 O O3 SO4 . . . B 2 60.932 60.945 28.903 1 22.31 ? O3 SO4 1001 A 1 HETATM 5 O O4 SO4 . . . B 2 60.464 62.626 27.256 1 25.32 ? O4 SO4 1001 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #