data_5RPK # _model_server_result.job_id 6dK5-bv5_cDG8RNJ6bztXg _model_server_result.datetime_utc '2024-11-18 07:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5RPK # _exptl.entry_id 5RPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RPK _cell.length_a 67.89 _cell.length_b 67.89 _cell.length_c 106.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 312 n n S O2 SO4 doub 313 n n S O3 SO4 sing 314 n n S O4 SO4 sing 315 n n # _atom_sites.entry_id 5RPK _atom_sites.fract_transf_matrix[1][1] 0.01473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1001 1001 SO4 SO4 . C 3 MRZ A 1 1002 1002 MRZ MRZ . D 4 HOH A 1 1101 115 HOH HOH . D 4 HOH A 2 1102 91 HOH HOH . D 4 HOH A 3 1103 202 HOH HOH . D 4 HOH A 4 1104 122 HOH HOH . D 4 HOH A 5 1105 151 HOH HOH . D 4 HOH A 6 1106 138 HOH HOH . D 4 HOH A 7 1107 96 HOH HOH . D 4 HOH A 8 1108 72 HOH HOH . D 4 HOH A 9 1109 66 HOH HOH . D 4 HOH A 10 1110 88 HOH HOH . D 4 HOH A 11 1111 162 HOH HOH . D 4 HOH A 12 1112 123 HOH HOH . D 4 HOH A 13 1113 5 HOH HOH . D 4 HOH A 14 1114 84 HOH HOH . D 4 HOH A 15 1115 90 HOH HOH . D 4 HOH A 16 1116 163 HOH HOH . D 4 HOH A 17 1117 8 HOH HOH . D 4 HOH A 18 1118 195 HOH HOH . D 4 HOH A 19 1119 28 HOH HOH . D 4 HOH A 20 1120 203 HOH HOH . D 4 HOH A 21 1121 57 HOH HOH . D 4 HOH A 22 1122 82 HOH HOH . D 4 HOH A 23 1123 192 HOH HOH . D 4 HOH A 24 1124 54 HOH HOH . D 4 HOH A 25 1125 95 HOH HOH . D 4 HOH A 26 1126 110 HOH HOH . D 4 HOH A 27 1127 6 HOH HOH . D 4 HOH A 28 1128 35 HOH HOH . D 4 HOH A 29 1129 86 HOH HOH . D 4 HOH A 30 1130 217 HOH HOH . D 4 HOH A 31 1131 144 HOH HOH . D 4 HOH A 32 1132 16 HOH HOH . D 4 HOH A 33 1133 225 HOH HOH . D 4 HOH A 34 1134 62 HOH HOH . D 4 HOH A 35 1135 61 HOH HOH . D 4 HOH A 36 1136 128 HOH HOH . D 4 HOH A 37 1137 223 HOH HOH . D 4 HOH A 38 1138 199 HOH HOH . D 4 HOH A 39 1139 118 HOH HOH . D 4 HOH A 40 1140 53 HOH HOH . D 4 HOH A 41 1141 4 HOH HOH . D 4 HOH A 42 1142 120 HOH HOH . D 4 HOH A 43 1143 65 HOH HOH . D 4 HOH A 44 1144 68 HOH HOH . D 4 HOH A 45 1145 149 HOH HOH . D 4 HOH A 46 1146 12 HOH HOH . D 4 HOH A 47 1147 161 HOH HOH . D 4 HOH A 48 1148 137 HOH HOH . D 4 HOH A 49 1149 67 HOH HOH . D 4 HOH A 50 1150 117 HOH HOH . D 4 HOH A 51 1151 210 HOH HOH . D 4 HOH A 52 1152 185 HOH HOH . D 4 HOH A 53 1153 47 HOH HOH . D 4 HOH A 54 1154 17 HOH HOH . D 4 HOH A 55 1155 181 HOH HOH . D 4 HOH A 56 1156 112 HOH HOH . D 4 HOH A 57 1157 101 HOH HOH . D 4 HOH A 58 1158 1 HOH HOH . D 4 HOH A 59 1159 176 HOH HOH . D 4 HOH A 60 1160 58 HOH HOH . D 4 HOH A 61 1161 183 HOH HOH . D 4 HOH A 62 1162 231 HOH HOH . D 4 HOH A 63 1163 56 HOH HOH . D 4 HOH A 64 1164 114 HOH HOH . D 4 HOH A 65 1165 79 HOH HOH . D 4 HOH A 66 1166 37 HOH HOH . D 4 HOH A 67 1167 36 HOH HOH . D 4 HOH A 68 1168 42 HOH HOH . D 4 HOH A 69 1169 75 HOH HOH . D 4 HOH A 70 1170 13 HOH HOH . D 4 HOH A 71 1171 39 HOH HOH . D 4 HOH A 72 1172 143 HOH HOH . D 4 HOH A 73 1173 30 HOH HOH . D 4 HOH A 74 1174 31 HOH HOH . D 4 HOH A 75 1175 18 HOH HOH . D 4 HOH A 76 1176 145 HOH HOH . D 4 HOH A 77 1177 180 HOH HOH . D 4 HOH A 78 1178 15 HOH HOH . D 4 HOH A 79 1179 229 HOH HOH . D 4 HOH A 80 1180 226 HOH HOH . D 4 HOH A 81 1181 2 HOH HOH . D 4 HOH A 82 1182 11 HOH HOH . D 4 HOH A 83 1183 164 HOH HOH . D 4 HOH A 84 1184 220 HOH HOH . D 4 HOH A 85 1185 32 HOH HOH . D 4 HOH A 86 1186 119 HOH HOH . D 4 HOH A 87 1187 78 HOH HOH . D 4 HOH A 88 1188 76 HOH HOH . D 4 HOH A 89 1189 46 HOH HOH . D 4 HOH A 90 1190 140 HOH HOH . D 4 HOH A 91 1191 52 HOH HOH . D 4 HOH A 92 1192 132 HOH HOH . D 4 HOH A 93 1193 103 HOH HOH . D 4 HOH A 94 1194 50 HOH HOH . D 4 HOH A 95 1195 49 HOH HOH . D 4 HOH A 96 1196 26 HOH HOH . D 4 HOH A 97 1197 107 HOH HOH . D 4 HOH A 98 1198 81 HOH HOH . D 4 HOH A 99 1199 27 HOH HOH . D 4 HOH A 100 1200 33 HOH HOH . D 4 HOH A 101 1201 126 HOH HOH . D 4 HOH A 102 1202 23 HOH HOH . D 4 HOH A 103 1203 156 HOH HOH . D 4 HOH A 104 1204 10 HOH HOH . D 4 HOH A 105 1205 40 HOH HOH . D 4 HOH A 106 1206 204 HOH HOH . D 4 HOH A 107 1207 193 HOH HOH . D 4 HOH A 108 1208 43 HOH HOH . D 4 HOH A 109 1209 20 HOH HOH . D 4 HOH A 110 1210 7 HOH HOH . D 4 HOH A 111 1211 105 HOH HOH . D 4 HOH A 112 1212 21 HOH HOH . D 4 HOH A 113 1213 25 HOH HOH . D 4 HOH A 114 1214 94 HOH HOH . D 4 HOH A 115 1215 34 HOH HOH . D 4 HOH A 116 1216 97 HOH HOH . D 4 HOH A 117 1217 63 HOH HOH . D 4 HOH A 118 1218 55 HOH HOH . D 4 HOH A 119 1219 154 HOH HOH . D 4 HOH A 120 1220 14 HOH HOH . D 4 HOH A 121 1221 85 HOH HOH . D 4 HOH A 122 1222 3 HOH HOH . D 4 HOH A 123 1223 207 HOH HOH . D 4 HOH A 124 1224 200 HOH HOH . D 4 HOH A 125 1225 24 HOH HOH . D 4 HOH A 126 1226 121 HOH HOH . D 4 HOH A 127 1227 38 HOH HOH . D 4 HOH A 128 1228 9 HOH HOH . D 4 HOH A 129 1229 44 HOH HOH . D 4 HOH A 130 1230 178 HOH HOH . D 4 HOH A 131 1231 165 HOH HOH . D 4 HOH A 132 1232 157 HOH HOH . D 4 HOH A 133 1233 22 HOH HOH . D 4 HOH A 134 1234 116 HOH HOH . D 4 HOH A 135 1235 153 HOH HOH . D 4 HOH A 136 1236 179 HOH HOH . D 4 HOH A 137 1237 109 HOH HOH . D 4 HOH A 138 1238 111 HOH HOH . D 4 HOH A 139 1239 70 HOH HOH . D 4 HOH A 140 1240 224 HOH HOH . D 4 HOH A 141 1241 135 HOH HOH . D 4 HOH A 142 1242 170 HOH HOH . D 4 HOH A 143 1243 73 HOH HOH . D 4 HOH A 144 1244 174 HOH HOH . D 4 HOH A 145 1245 19 HOH HOH . D 4 HOH A 146 1246 147 HOH HOH . D 4 HOH A 147 1247 158 HOH HOH . D 4 HOH A 148 1248 213 HOH HOH . D 4 HOH A 149 1249 51 HOH HOH . D 4 HOH A 150 1250 77 HOH HOH . D 4 HOH A 151 1251 211 HOH HOH . D 4 HOH A 152 1252 64 HOH HOH . D 4 HOH A 153 1253 29 HOH HOH . D 4 HOH A 154 1254 98 HOH HOH . D 4 HOH A 155 1255 41 HOH HOH . D 4 HOH A 156 1256 214 HOH HOH . D 4 HOH A 157 1257 155 HOH HOH . D 4 HOH A 158 1258 59 HOH HOH . D 4 HOH A 159 1259 87 HOH HOH . D 4 HOH A 160 1260 188 HOH HOH . D 4 HOH A 161 1261 45 HOH HOH . D 4 HOH A 162 1262 71 HOH HOH . D 4 HOH A 163 1263 141 HOH HOH . D 4 HOH A 164 1264 232 HOH HOH . D 4 HOH A 165 1265 171 HOH HOH . D 4 HOH A 166 1266 100 HOH HOH . D 4 HOH A 167 1267 182 HOH HOH . D 4 HOH A 168 1268 102 HOH HOH . D 4 HOH A 169 1269 80 HOH HOH . D 4 HOH A 170 1270 206 HOH HOH . D 4 HOH A 171 1271 198 HOH HOH . D 4 HOH A 172 1272 127 HOH HOH . D 4 HOH A 173 1273 197 HOH HOH . D 4 HOH A 174 1274 169 HOH HOH . D 4 HOH A 175 1275 167 HOH HOH . D 4 HOH A 176 1276 173 HOH HOH . D 4 HOH A 177 1277 131 HOH HOH . D 4 HOH A 178 1278 48 HOH HOH . D 4 HOH A 179 1279 172 HOH HOH . D 4 HOH A 180 1280 142 HOH HOH . D 4 HOH A 181 1281 168 HOH HOH . D 4 HOH A 182 1282 83 HOH HOH . D 4 HOH A 183 1283 194 HOH HOH . D 4 HOH A 184 1284 219 HOH HOH . D 4 HOH A 185 1285 166 HOH HOH . D 4 HOH A 186 1286 60 HOH HOH . D 4 HOH A 187 1287 184 HOH HOH . D 4 HOH A 188 1288 212 HOH HOH . D 4 HOH A 189 1289 216 HOH HOH . D 4 HOH A 190 1290 227 HOH HOH . D 4 HOH A 191 1291 186 HOH HOH . D 4 HOH A 192 1292 189 HOH HOH . D 4 HOH A 193 1293 191 HOH HOH . D 4 HOH A 194 1294 218 HOH HOH . D 4 HOH A 195 1295 152 HOH HOH . D 4 HOH A 196 1296 133 HOH HOH . D 4 HOH A 197 1297 233 HOH HOH . D 4 HOH A 198 1298 221 HOH HOH . D 4 HOH A 199 1299 228 HOH HOH . D 4 HOH A 200 1300 136 HOH HOH . D 4 HOH A 201 1301 201 HOH HOH . D 4 HOH A 202 1302 148 HOH HOH . D 4 HOH A 203 1303 190 HOH HOH . D 4 HOH A 204 1304 134 HOH HOH . D 4 HOH A 205 1305 175 HOH HOH . D 4 HOH A 206 1306 130 HOH HOH . D 4 HOH A 207 1307 113 HOH HOH . D 4 HOH A 208 1308 230 HOH HOH . D 4 HOH A 209 1309 124 HOH HOH . D 4 HOH A 210 1310 74 HOH HOH . D 4 HOH A 211 1311 129 HOH HOH . D 4 HOH A 212 1312 196 HOH HOH . D 4 HOH A 213 1313 146 HOH HOH . D 4 HOH A 214 1314 69 HOH HOH . D 4 HOH A 215 1315 125 HOH HOH . D 4 HOH A 216 1316 99 HOH HOH . D 4 HOH A 217 1317 187 HOH HOH . D 4 HOH A 218 1318 108 HOH HOH . D 4 HOH A 219 1319 159 HOH HOH . D 4 HOH A 220 1320 92 HOH HOH . D 4 HOH A 221 1321 222 HOH HOH . D 4 HOH A 222 1322 89 HOH HOH . D 4 HOH A 223 1323 106 HOH HOH . D 4 HOH A 224 1324 205 HOH HOH . D 4 HOH A 225 1325 160 HOH HOH . D 4 HOH A 226 1326 177 HOH HOH . D 4 HOH A 227 1327 208 HOH HOH . D 4 HOH A 228 1328 150 HOH HOH . D 4 HOH A 229 1329 215 HOH HOH . D 4 HOH A 230 1330 139 HOH HOH . D 4 HOH A 231 1331 93 HOH HOH . D 4 HOH A 232 1332 209 HOH HOH . D 4 HOH A 233 1333 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 61.264 60.916 28.415 1 20.2 ? S SO4 1001 A 1 HETATM 2 O O1 SO4 . . . B 2 61.341 60.395 29.79 1 22.73 ? O1 SO4 1001 A 1 HETATM 3 O O2 SO4 . . . B 2 62.53 60.622 27.749 1 22.91 ? O2 SO4 1001 A 1 HETATM 4 O O3 SO4 . . . B 2 60.187 60.255 27.67 1 18.45 ? O3 SO4 1001 A 1 HETATM 5 O O4 SO4 . . . B 2 61.043 62.352 28.467 1 25.79 ? O4 SO4 1001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 5 #