data_5RVJ # _model_server_result.job_id cxEnNq51I8KMrsyliNl3fg _model_server_result.datetime_utc '2024-10-15 07:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5RVJ # _exptl.entry_id 5RVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.157 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-amino-2H-chromen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.03 _cell.angle_gamma 90 _cell.entry_id 5RVJ _cell.length_a 129.9 _cell.length_b 30.15 _cell.length_c 39.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H7 N O2' _chem_comp.formula_weight 161.157 _chem_comp.id 4JQ _chem_comp.mon_nstd_flag . _chem_comp.name 6-amino-2H-chromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 4JQ doub 1 n y C2 C3 4JQ sing 2 n y O C3 4JQ sing 3 n n O C4 4JQ sing 4 n n O1 C4 4JQ doub 5 n n C1 C 4JQ sing 6 n y C3 C7 4JQ doub 7 n y C4 C5 4JQ sing 8 n n C N 4JQ sing 9 n n C C8 4JQ doub 10 n y C7 C8 4JQ sing 11 n y C7 C6 4JQ sing 12 n n C5 C6 4JQ doub 13 n n C1 H1 4JQ sing 14 n n C2 H2 4JQ sing 15 n n C5 H3 4JQ sing 16 n n C6 H4 4JQ sing 17 n n C8 H5 4JQ sing 18 n n N H6 4JQ sing 19 n n N H7 4JQ sing 20 n n # _atom_sites.entry_id 5RVJ _atom_sites.fract_transf_matrix[1][1] 0.007698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4JQ A 1 201 201 4JQ LIG . C 3 HOH A 1 301 204 HOH HOH . C 3 HOH A 2 302 243 HOH HOH . C 3 HOH A 3 303 130 HOH HOH . C 3 HOH A 4 304 184 HOH HOH . C 3 HOH A 5 305 260 HOH HOH . C 3 HOH A 6 306 254 HOH HOH . C 3 HOH A 7 307 40 HOH HOH . C 3 HOH A 8 308 128 HOH HOH . C 3 HOH A 9 309 218 HOH HOH . C 3 HOH A 10 310 81 HOH HOH . C 3 HOH A 11 311 209 HOH HOH . C 3 HOH A 12 312 125 HOH HOH . C 3 HOH A 13 313 68 HOH HOH . C 3 HOH A 14 314 166 HOH HOH . C 3 HOH A 15 315 134 HOH HOH . C 3 HOH A 16 316 77 HOH HOH . C 3 HOH A 17 317 234 HOH HOH . C 3 HOH A 18 318 221 HOH HOH . C 3 HOH A 19 319 104 HOH HOH . C 3 HOH A 20 320 202 HOH HOH . C 3 HOH A 21 321 249 HOH HOH . C 3 HOH A 22 322 150 HOH HOH . C 3 HOH A 23 323 90 HOH HOH . C 3 HOH A 24 324 118 HOH HOH . C 3 HOH A 25 325 220 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 208 HOH HOH . C 3 HOH A 28 328 149 HOH HOH . C 3 HOH A 29 329 47 HOH HOH . C 3 HOH A 30 330 151 HOH HOH . C 3 HOH A 31 331 235 HOH HOH . C 3 HOH A 32 332 41 HOH HOH . C 3 HOH A 33 333 106 HOH HOH . C 3 HOH A 34 334 66 HOH HOH . C 3 HOH A 35 335 262 HOH HOH . C 3 HOH A 36 336 45 HOH HOH . C 3 HOH A 37 337 139 HOH HOH . C 3 HOH A 38 338 56 HOH HOH . C 3 HOH A 39 339 117 HOH HOH . C 3 HOH A 40 340 10 HOH HOH . C 3 HOH A 41 341 119 HOH HOH . C 3 HOH A 42 342 237 HOH HOH . C 3 HOH A 43 343 75 HOH HOH . C 3 HOH A 44 344 159 HOH HOH . C 3 HOH A 45 345 101 HOH HOH . C 3 HOH A 46 346 36 HOH HOH . C 3 HOH A 47 347 1 HOH HOH . C 3 HOH A 48 348 65 HOH HOH . C 3 HOH A 49 349 23 HOH HOH . C 3 HOH A 50 350 192 HOH HOH . C 3 HOH A 51 351 53 HOH HOH . C 3 HOH A 52 352 199 HOH HOH . C 3 HOH A 53 353 14 HOH HOH . C 3 HOH A 54 354 55 HOH HOH . C 3 HOH A 55 355 71 HOH HOH . C 3 HOH A 56 356 62 HOH HOH . C 3 HOH A 57 357 16 HOH HOH . C 3 HOH A 58 358 229 HOH HOH . C 3 HOH A 59 359 200 HOH HOH . C 3 HOH A 60 360 9 HOH HOH . C 3 HOH A 61 361 191 HOH HOH . C 3 HOH A 62 362 91 HOH HOH . C 3 HOH A 63 363 22 HOH HOH . C 3 HOH A 64 364 88 HOH HOH . C 3 HOH A 65 365 18 HOH HOH . C 3 HOH A 66 366 111 HOH HOH . C 3 HOH A 67 367 114 HOH HOH . C 3 HOH A 68 368 82 HOH HOH . C 3 HOH A 69 369 135 HOH HOH . C 3 HOH A 70 370 8 HOH HOH . C 3 HOH A 71 371 43 HOH HOH . C 3 HOH A 72 372 30 HOH HOH . C 3 HOH A 73 373 44 HOH HOH . C 3 HOH A 74 374 3 HOH HOH . C 3 HOH A 75 375 154 HOH HOH . C 3 HOH A 76 376 15 HOH HOH . C 3 HOH A 77 377 4 HOH HOH . C 3 HOH A 78 378 239 HOH HOH . C 3 HOH A 79 379 73 HOH HOH . C 3 HOH A 80 380 42 HOH HOH . C 3 HOH A 81 381 46 HOH HOH . C 3 HOH A 82 382 2 HOH HOH . C 3 HOH A 83 383 25 HOH HOH . C 3 HOH A 84 384 144 HOH HOH . C 3 HOH A 85 385 97 HOH HOH . C 3 HOH A 86 386 67 HOH HOH . C 3 HOH A 87 387 212 HOH HOH . C 3 HOH A 88 388 164 HOH HOH . C 3 HOH A 89 389 38 HOH HOH . C 3 HOH A 90 390 107 HOH HOH . C 3 HOH A 91 391 173 HOH HOH . C 3 HOH A 92 392 248 HOH HOH . C 3 HOH A 93 393 129 HOH HOH . C 3 HOH A 94 394 232 HOH HOH . C 3 HOH A 95 395 7 HOH HOH . C 3 HOH A 96 396 89 HOH HOH . C 3 HOH A 97 397 39 HOH HOH . C 3 HOH A 98 398 161 HOH HOH . C 3 HOH A 99 399 132 HOH HOH . C 3 HOH A 100 400 105 HOH HOH . C 3 HOH A 101 401 24 HOH HOH . C 3 HOH A 102 402 37 HOH HOH . C 3 HOH A 103 403 126 HOH HOH . C 3 HOH A 104 404 170 HOH HOH . C 3 HOH A 105 405 83 HOH HOH . C 3 HOH A 106 406 61 HOH HOH . C 3 HOH A 107 407 240 HOH HOH . C 3 HOH A 108 408 168 HOH HOH . C 3 HOH A 109 409 50 HOH HOH . C 3 HOH A 110 410 123 HOH HOH . C 3 HOH A 111 411 79 HOH HOH . C 3 HOH A 112 412 11 HOH HOH . C 3 HOH A 113 413 34 HOH HOH . C 3 HOH A 114 414 35 HOH HOH . C 3 HOH A 115 415 74 HOH HOH . C 3 HOH A 116 416 21 HOH HOH . C 3 HOH A 117 417 236 HOH HOH . C 3 HOH A 118 418 121 HOH HOH . C 3 HOH A 119 419 261 HOH HOH . C 3 HOH A 120 420 72 HOH HOH . C 3 HOH A 121 421 181 HOH HOH . C 3 HOH A 122 422 155 HOH HOH . C 3 HOH A 123 423 222 HOH HOH . C 3 HOH A 124 424 54 HOH HOH . C 3 HOH A 125 425 32 HOH HOH . C 3 HOH A 126 426 84 HOH HOH . C 3 HOH A 127 427 156 HOH HOH . C 3 HOH A 128 428 142 HOH HOH . C 3 HOH A 129 429 51 HOH HOH . C 3 HOH A 130 430 29 HOH HOH . C 3 HOH A 131 431 95 HOH HOH . C 3 HOH A 132 432 120 HOH HOH . C 3 HOH A 133 433 5 HOH HOH . C 3 HOH A 134 434 185 HOH HOH . C 3 HOH A 135 435 33 HOH HOH . C 3 HOH A 136 436 20 HOH HOH . C 3 HOH A 137 437 112 HOH HOH . C 3 HOH A 138 438 19 HOH HOH . C 3 HOH A 139 439 13 HOH HOH . C 3 HOH A 140 440 102 HOH HOH . C 3 HOH A 141 441 108 HOH HOH . C 3 HOH A 142 442 12 HOH HOH . C 3 HOH A 143 443 187 HOH HOH . C 3 HOH A 144 444 57 HOH HOH . C 3 HOH A 145 445 52 HOH HOH . C 3 HOH A 146 446 147 HOH HOH . C 3 HOH A 147 447 80 HOH HOH . C 3 HOH A 148 448 188 HOH HOH . C 3 HOH A 149 449 110 HOH HOH . C 3 HOH A 150 450 174 HOH HOH . C 3 HOH A 151 451 263 HOH HOH . C 3 HOH A 152 452 244 HOH HOH . C 3 HOH A 153 453 64 HOH HOH . C 3 HOH A 154 454 180 HOH HOH . C 3 HOH A 155 455 193 HOH HOH . C 3 HOH A 156 456 219 HOH HOH . C 3 HOH A 157 457 6 HOH HOH . C 3 HOH A 158 458 28 HOH HOH . C 3 HOH A 159 459 169 HOH HOH . C 3 HOH A 160 460 98 HOH HOH . C 3 HOH A 161 461 230 HOH HOH . C 3 HOH A 162 462 99 HOH HOH . C 3 HOH A 163 463 17 HOH HOH . C 3 HOH A 164 464 233 HOH HOH . C 3 HOH A 165 465 27 HOH HOH . C 3 HOH A 166 466 31 HOH HOH . C 3 HOH A 167 467 190 HOH HOH . C 3 HOH A 168 468 103 HOH HOH . C 3 HOH A 169 469 196 HOH HOH . C 3 HOH A 170 470 143 HOH HOH . C 3 HOH A 171 471 213 HOH HOH . C 3 HOH A 172 472 96 HOH HOH . C 3 HOH A 173 473 175 HOH HOH . C 3 HOH A 174 474 167 HOH HOH . C 3 HOH A 175 475 228 HOH HOH . C 3 HOH A 176 476 238 HOH HOH . C 3 HOH A 177 477 69 HOH HOH . C 3 HOH A 178 478 127 HOH HOH . C 3 HOH A 179 479 258 HOH HOH . C 3 HOH A 180 480 141 HOH HOH . C 3 HOH A 181 481 162 HOH HOH . C 3 HOH A 182 482 227 HOH HOH . C 3 HOH A 183 483 171 HOH HOH . C 3 HOH A 184 484 197 HOH HOH . C 3 HOH A 185 485 93 HOH HOH . C 3 HOH A 186 486 48 HOH HOH . C 3 HOH A 187 487 122 HOH HOH . C 3 HOH A 188 488 215 HOH HOH . C 3 HOH A 189 489 231 HOH HOH . C 3 HOH A 190 490 85 HOH HOH . C 3 HOH A 191 491 246 HOH HOH . C 3 HOH A 192 492 49 HOH HOH . C 3 HOH A 193 493 140 HOH HOH . C 3 HOH A 194 494 94 HOH HOH . C 3 HOH A 195 495 259 HOH HOH . C 3 HOH A 196 496 203 HOH HOH . C 3 HOH A 197 497 256 HOH HOH . C 3 HOH A 198 498 194 HOH HOH . C 3 HOH A 199 499 179 HOH HOH . C 3 HOH A 200 500 86 HOH HOH . C 3 HOH A 201 501 252 HOH HOH . C 3 HOH A 202 502 63 HOH HOH . C 3 HOH A 203 503 145 HOH HOH . C 3 HOH A 204 504 176 HOH HOH . C 3 HOH A 205 505 224 HOH HOH . C 3 HOH A 206 506 131 HOH HOH . C 3 HOH A 207 507 195 HOH HOH . C 3 HOH A 208 508 116 HOH HOH . C 3 HOH A 209 509 177 HOH HOH . C 3 HOH A 210 510 163 HOH HOH . C 3 HOH A 211 511 183 HOH HOH . C 3 HOH A 212 512 136 HOH HOH . C 3 HOH A 213 513 211 HOH HOH . C 3 HOH A 214 514 60 HOH HOH . C 3 HOH A 215 515 245 HOH HOH . C 3 HOH A 216 516 255 HOH HOH . C 3 HOH A 217 517 137 HOH HOH . C 3 HOH A 218 518 216 HOH HOH . C 3 HOH A 219 519 59 HOH HOH . C 3 HOH A 220 520 152 HOH HOH . C 3 HOH A 221 521 157 HOH HOH . C 3 HOH A 222 522 182 HOH HOH . C 3 HOH A 223 523 58 HOH HOH . C 3 HOH A 224 524 124 HOH HOH . C 3 HOH A 225 525 186 HOH HOH . C 3 HOH A 226 526 189 HOH HOH . C 3 HOH A 227 527 250 HOH HOH . C 3 HOH A 228 528 206 HOH HOH . C 3 HOH A 229 529 148 HOH HOH . C 3 HOH A 230 530 115 HOH HOH . C 3 HOH A 231 531 178 HOH HOH . C 3 HOH A 232 532 223 HOH HOH . C 3 HOH A 233 533 217 HOH HOH . C 3 HOH A 234 534 109 HOH HOH . C 3 HOH A 235 535 113 HOH HOH . C 3 HOH A 236 536 241 HOH HOH . C 3 HOH A 237 537 153 HOH HOH . C 3 HOH A 238 538 92 HOH HOH . C 3 HOH A 239 539 205 HOH HOH . C 3 HOH A 240 540 207 HOH HOH . C 3 HOH A 241 541 146 HOH HOH . C 3 HOH A 242 542 100 HOH HOH . C 3 HOH A 243 543 226 HOH HOH . C 3 HOH A 244 544 158 HOH HOH . C 3 HOH A 245 545 214 HOH HOH . C 3 HOH A 246 546 87 HOH HOH . C 3 HOH A 247 547 198 HOH HOH . C 3 HOH A 248 548 138 HOH HOH . C 3 HOH A 249 549 257 HOH HOH . C 3 HOH A 250 550 70 HOH HOH . C 3 HOH A 251 551 253 HOH HOH . C 3 HOH A 252 552 160 HOH HOH . C 3 HOH A 253 553 251 HOH HOH . C 3 HOH A 254 554 76 HOH HOH . C 3 HOH A 255 555 133 HOH HOH . C 3 HOH A 256 556 201 HOH HOH . C 3 HOH A 257 557 165 HOH HOH . C 3 HOH A 258 558 247 HOH HOH . C 3 HOH A 259 559 225 HOH HOH . C 3 HOH A 260 560 78 HOH HOH . C 3 HOH A 261 561 242 HOH HOH . C 3 HOH A 262 562 172 HOH HOH . C 3 HOH A 263 563 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4JQ . . . B 2 3.391 3.752 -1.764 0.77 39.16 ? C1 4JQ 201 A 1 HETATM 2 C C2 4JQ . . . B 2 3.264 4.859 -0.919 0.77 37.93 ? C2 4JQ 201 A 1 HETATM 3 C C3 4JQ . . . B 2 3.269 4.678 0.474 0.77 36.76 ? C3 4JQ 201 A 1 HETATM 4 C C4 4JQ . . . B 2 2.866 5.676 2.763 0.77 28.78 ? C4 4JQ 201 A 1 HETATM 5 C C5 4JQ . . . B 2 2.937 4.304 3.348 0.77 32.21 ? C5 4JQ 201 A 1 HETATM 6 C C6 4JQ . . . B 2 3.411 3.218 2.514 0.77 35.31 ? C6 4JQ 201 A 1 HETATM 7 C C7 4JQ . . . B 2 3.403 3.393 1.016 0.77 36.91 ? C7 4JQ 201 A 1 HETATM 8 C C8 4JQ . . . B 2 3.532 2.29 0.152 0.77 37.92 ? C8 4JQ 201 A 1 HETATM 9 O O1 4JQ . . . B 2 2.595 6.612 3.428 0.77 25.19 ? O1 4JQ 201 A 1 HETATM 10 O O 4JQ . . . B 2 3.133 5.857 1.369 0.77 33.56 ? O 4JQ 201 A 1 HETATM 11 C C 4JQ . . . B 2 3.529 2.456 -1.206 0.77 39.33 ? C 4JQ 201 A 1 HETATM 12 N N 4JQ . . . B 2 3.665 1.315 -2.085 0.77 39.56 ? N 4JQ 201 A 1 HETATM 13 H H1 4JQ . . . B 2 3.389 3.866 -2.687 0.77 47.01 ? H1 4JQ 201 A 1 HETATM 14 H H2 4JQ . . . B 2 3.173 5.712 -1.278 0.77 45.54 ? H2 4JQ 201 A 1 HETATM 15 H H3 4JQ . . . B 2 2.682 4.15 4.229 0.77 38.67 ? H3 4JQ 201 A 1 HETATM 16 H H4 4JQ . . . B 2 3.715 2.426 2.896 0.77 42.39 ? H4 4JQ 201 A 1 HETATM 17 H H5 4JQ . . . B 2 3.624 1.436 0.509 0.77 45.52 ? H5 4JQ 201 A 1 HETATM 18 H H6 4JQ . . . B 2 4.096 1.402 -2.823 0.77 47.49 ? H6 4JQ 201 A 1 HETATM 19 H H7 4JQ . . . B 2 3.296 0.572 -1.863 0.77 47.49 ? H7 4JQ 201 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 19 #