data_5RVK # _model_server_result.job_id WN76IaBhk9CGoeFFsn_IiQ _model_server_result.datetime_utc '2024-11-21 09:05:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5RVK # _exptl.entry_id 5RVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 240.053 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-bromo-5-methyl-1H-indole-2,3-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.33 _cell.angle_gamma 90 _cell.entry_id 5RVK _cell.length_a 130.02 _cell.length_b 29.96 _cell.length_c 39.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H6 Br N O2' _chem_comp.formula_weight 240.053 _chem_comp.id 2AK _chem_comp.mon_nstd_flag . _chem_comp.name 7-bromo-5-methyl-1H-indole-2,3-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C5 2AK sing 1 n n C4 C5 2AK doub 2 n y C4 C3 2AK sing 3 n y C5 C6 2AK sing 4 n y C12 C3 2AK sing 5 n n C3 C2 2AK doub 6 n y C6 N7 2AK sing 7 n n C6 C1 2AK doub 8 n y N7 C8 2AK sing 9 n n C2 C1 2AK sing 10 n y C1 C9 2AK sing 11 n n C8 C9 2AK sing 12 n n C8 O11 2AK doub 13 n n C9 O10 2AK doub 14 n n C4 H1 2AK sing 15 n n C12 H2 2AK sing 16 n n C12 H3 2AK sing 17 n n C12 H4 2AK sing 18 n n C2 H5 2AK sing 19 n n N7 H6 2AK sing 20 n n # _atom_sites.entry_id 5RVK _atom_sites.fract_transf_matrix[1][1] 0.007691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000989 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2AK A 1 201 201 2AK LIG . C 3 HOH A 1 301 106 HOH HOH . C 3 HOH A 2 302 54 HOH HOH . C 3 HOH A 3 303 66 HOH HOH . C 3 HOH A 4 304 17 HOH HOH . C 3 HOH A 5 305 55 HOH HOH . C 3 HOH A 6 306 94 HOH HOH . C 3 HOH A 7 307 110 HOH HOH . C 3 HOH A 8 308 131 HOH HOH . C 3 HOH A 9 309 50 HOH HOH . C 3 HOH A 10 310 11 HOH HOH . C 3 HOH A 11 311 97 HOH HOH . C 3 HOH A 12 312 77 HOH HOH . C 3 HOH A 13 313 132 HOH HOH . C 3 HOH A 14 314 33 HOH HOH . C 3 HOH A 15 315 124 HOH HOH . C 3 HOH A 16 316 64 HOH HOH . C 3 HOH A 17 317 2 HOH HOH . C 3 HOH A 18 318 26 HOH HOH . C 3 HOH A 19 319 31 HOH HOH . C 3 HOH A 20 320 74 HOH HOH . C 3 HOH A 21 321 82 HOH HOH . C 3 HOH A 22 322 73 HOH HOH . C 3 HOH A 23 323 25 HOH HOH . C 3 HOH A 24 324 120 HOH HOH . C 3 HOH A 25 325 76 HOH HOH . C 3 HOH A 26 326 5 HOH HOH . C 3 HOH A 27 327 10 HOH HOH . C 3 HOH A 28 328 46 HOH HOH . C 3 HOH A 29 329 116 HOH HOH . C 3 HOH A 30 330 67 HOH HOH . C 3 HOH A 31 331 12 HOH HOH . C 3 HOH A 32 332 58 HOH HOH . C 3 HOH A 33 333 19 HOH HOH . C 3 HOH A 34 334 87 HOH HOH . C 3 HOH A 35 335 96 HOH HOH . C 3 HOH A 36 336 1 HOH HOH . C 3 HOH A 37 337 109 HOH HOH . C 3 HOH A 38 338 57 HOH HOH . C 3 HOH A 39 339 117 HOH HOH . C 3 HOH A 40 340 4 HOH HOH . C 3 HOH A 41 341 69 HOH HOH . C 3 HOH A 42 342 6 HOH HOH . C 3 HOH A 43 343 47 HOH HOH . C 3 HOH A 44 344 72 HOH HOH . C 3 HOH A 45 345 16 HOH HOH . C 3 HOH A 46 346 18 HOH HOH . C 3 HOH A 47 347 71 HOH HOH . C 3 HOH A 48 348 86 HOH HOH . C 3 HOH A 49 349 95 HOH HOH . C 3 HOH A 50 350 20 HOH HOH . C 3 HOH A 51 351 92 HOH HOH . C 3 HOH A 52 352 39 HOH HOH . C 3 HOH A 53 353 51 HOH HOH . C 3 HOH A 54 354 102 HOH HOH . C 3 HOH A 55 355 27 HOH HOH . C 3 HOH A 56 356 60 HOH HOH . C 3 HOH A 57 357 49 HOH HOH . C 3 HOH A 58 358 81 HOH HOH . C 3 HOH A 59 359 56 HOH HOH . C 3 HOH A 60 360 78 HOH HOH . C 3 HOH A 61 361 8 HOH HOH . C 3 HOH A 62 362 38 HOH HOH . C 3 HOH A 63 363 53 HOH HOH . C 3 HOH A 64 364 62 HOH HOH . C 3 HOH A 65 365 41 HOH HOH . C 3 HOH A 66 366 59 HOH HOH . C 3 HOH A 67 367 34 HOH HOH . C 3 HOH A 68 368 119 HOH HOH . C 3 HOH A 69 369 14 HOH HOH . C 3 HOH A 70 370 45 HOH HOH . C 3 HOH A 71 371 29 HOH HOH . C 3 HOH A 72 372 99 HOH HOH . C 3 HOH A 73 373 103 HOH HOH . C 3 HOH A 74 374 101 HOH HOH . C 3 HOH A 75 375 40 HOH HOH . C 3 HOH A 76 376 65 HOH HOH . C 3 HOH A 77 377 85 HOH HOH . C 3 HOH A 78 378 28 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 36 HOH HOH . C 3 HOH A 81 381 127 HOH HOH . C 3 HOH A 82 382 121 HOH HOH . C 3 HOH A 83 383 23 HOH HOH . C 3 HOH A 84 384 22 HOH HOH . C 3 HOH A 85 385 15 HOH HOH . C 3 HOH A 86 386 52 HOH HOH . C 3 HOH A 87 387 139 HOH HOH . C 3 HOH A 88 388 70 HOH HOH . C 3 HOH A 89 389 136 HOH HOH . C 3 HOH A 90 390 98 HOH HOH . C 3 HOH A 91 391 134 HOH HOH . C 3 HOH A 92 392 32 HOH HOH . C 3 HOH A 93 393 128 HOH HOH . C 3 HOH A 94 394 3 HOH HOH . C 3 HOH A 95 395 43 HOH HOH . C 3 HOH A 96 396 84 HOH HOH . C 3 HOH A 97 397 13 HOH HOH . C 3 HOH A 98 398 9 HOH HOH . C 3 HOH A 99 399 37 HOH HOH . C 3 HOH A 100 400 30 HOH HOH . C 3 HOH A 101 401 141 HOH HOH . C 3 HOH A 102 402 35 HOH HOH . C 3 HOH A 103 403 63 HOH HOH . C 3 HOH A 104 404 90 HOH HOH . C 3 HOH A 105 405 80 HOH HOH . C 3 HOH A 106 406 21 HOH HOH . C 3 HOH A 107 407 24 HOH HOH . C 3 HOH A 108 408 7 HOH HOH . C 3 HOH A 109 409 125 HOH HOH . C 3 HOH A 110 410 61 HOH HOH . C 3 HOH A 111 411 42 HOH HOH . C 3 HOH A 112 412 137 HOH HOH . C 3 HOH A 113 413 112 HOH HOH . C 3 HOH A 114 414 91 HOH HOH . C 3 HOH A 115 415 140 HOH HOH . C 3 HOH A 116 416 135 HOH HOH . C 3 HOH A 117 417 126 HOH HOH . C 3 HOH A 118 418 100 HOH HOH . C 3 HOH A 119 419 75 HOH HOH . C 3 HOH A 120 420 107 HOH HOH . C 3 HOH A 121 421 108 HOH HOH . C 3 HOH A 122 422 104 HOH HOH . C 3 HOH A 123 423 83 HOH HOH . C 3 HOH A 124 424 89 HOH HOH . C 3 HOH A 125 425 88 HOH HOH . C 3 HOH A 126 426 44 HOH HOH . C 3 HOH A 127 427 123 HOH HOH . C 3 HOH A 128 428 111 HOH HOH . C 3 HOH A 129 429 142 HOH HOH . C 3 HOH A 130 430 68 HOH HOH . C 3 HOH A 131 431 130 HOH HOH . C 3 HOH A 132 432 48 HOH HOH . C 3 HOH A 133 433 115 HOH HOH . C 3 HOH A 134 434 105 HOH HOH . C 3 HOH A 135 435 114 HOH HOH . C 3 HOH A 136 436 129 HOH HOH . C 3 HOH A 137 437 122 HOH HOH . C 3 HOH A 138 438 93 HOH HOH . C 3 HOH A 139 439 138 HOH HOH . C 3 HOH A 140 440 113 HOH HOH . C 3 HOH A 141 441 133 HOH HOH . C 3 HOH A 142 442 143 HOH HOH . C 3 HOH A 143 443 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR1 2AK . . . B 2 3.77 18.381 -9.096 0.77 62.05 ? BR1 2AK 201 A 1 HETATM 2 C C5 2AK . . . B 2 3.207 16.761 -10.004 0.77 56.13 ? C5 2AK 201 A 1 HETATM 3 C C4 2AK . . . B 2 3.498 16.583 -11.363 0.77 54.8 ? C4 2AK 201 A 1 HETATM 4 C C3 2AK . . . B 2 3.114 15.386 -12.02 0.77 51.99 ? C3 2AK 201 A 1 HETATM 5 C C12 2AK . . . B 2 3.431 15.193 -13.501 0.77 52.65 ? C12 2AK 201 A 1 HETATM 6 C C2 2AK . . . B 2 2.444 14.38 -11.31 0.77 49.57 ? C2 2AK 201 A 1 HETATM 7 C C6 2AK . . . B 2 2.538 15.757 -9.293 0.77 51.63 ? C6 2AK 201 A 1 HETATM 8 N N7 2AK . . . B 2 2.096 15.664 -7.845 0.77 50.27 ? N7 2AK 201 A 1 HETATM 9 C C8 2AK . . . B 2 1.44 14.385 -7.655 0.77 47.5 ? C8 2AK 201 A 1 HETATM 10 O O11 2AK . . . B 2 0.904 14.02 -6.664 0.77 43.71 ? O11 2AK 201 A 1 HETATM 11 C C9 2AK . . . B 2 1.459 13.672 -8.943 0.77 51.24 ? C9 2AK 201 A 1 HETATM 12 C C1 2AK . . . B 2 2.153 14.556 -9.952 0.77 50.73 ? C1 2AK 201 A 1 HETATM 13 O O10 2AK . . . B 2 0.941 12.63 -9.17 0.77 53.6 ? O10 2AK 201 A 1 HETATM 14 H H1 2AK . . . B 2 3.968 17.238 -11.827 0.77 65.76 ? H1 2AK 201 A 1 HETATM 15 H H2 2AK . . . B 2 2.68 15.497 -14.035 0.77 63.18 ? H2 2AK 201 A 1 HETATM 16 H H3 2AK . . . B 2 4.221 15.706 -13.732 0.77 63.18 ? H3 2AK 201 A 1 HETATM 17 H H4 2AK . . . B 2 3.593 14.253 -13.677 0.77 63.18 ? H4 2AK 201 A 1 HETATM 18 H H5 2AK . . . B 2 2.171 13.606 -11.747 0.77 59.48 ? H5 2AK 201 A 1 HETATM 19 H H6 2AK . . . B 2 2.211 16.267 -7.242 0.77 60.32 ? H6 2AK 201 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #