data_5RVL # _model_server_result.job_id V8RIqXtJmfy2fN3EsNoAuw _model_server_result.datetime_utc '2024-11-17 21:51:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5RVL # _exptl.entry_id 5RVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 108.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-METHYLPYRIDIN-2-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.79 _cell.angle_gamma 90 _cell.entry_id 5RVL _cell.length_a 132.48 _cell.length_b 29.9 _cell.length_c 37.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 N2' _chem_comp.formula_weight 108.141 _chem_comp.id BVF _chem_comp.mon_nstd_flag . _chem_comp.name 4-METHYLPYRIDIN-2-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-AMINO-4-PICOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BVF doub 70 n y C1 N6 BVF sing 71 n y C1 H1 BVF sing 72 n n C2 C3 BVF sing 73 n y C2 H2 BVF sing 74 n n C3 C4 BVF doub 75 n y C3 C8 BVF sing 76 n n C4 C5 BVF sing 77 n y C4 H4 BVF sing 78 n n C5 N6 BVF doub 79 n y C5 N7 BVF sing 80 n n N7 HN71 BVF sing 81 n n N7 HN72 BVF sing 82 n n C8 H81 BVF sing 83 n n C8 H82 BVF sing 84 n n C8 H83 BVF sing 85 n n # _atom_sites.entry_id 5RVL _atom_sites.fract_transf_matrix[1][1] 0.007548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001167 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BVF A 1 201 201 BVF LIG . C 3 HOH A 1 301 130 HOH HOH . C 3 HOH A 2 302 94 HOH HOH . C 3 HOH A 3 303 146 HOH HOH . C 3 HOH A 4 304 58 HOH HOH . C 3 HOH A 5 305 85 HOH HOH . C 3 HOH A 6 306 112 HOH HOH . C 3 HOH A 7 307 72 HOH HOH . C 3 HOH A 8 308 88 HOH HOH . C 3 HOH A 9 309 106 HOH HOH . C 3 HOH A 10 310 137 HOH HOH . C 3 HOH A 11 311 90 HOH HOH . C 3 HOH A 12 312 37 HOH HOH . C 3 HOH A 13 313 119 HOH HOH . C 3 HOH A 14 314 68 HOH HOH . C 3 HOH A 15 315 76 HOH HOH . C 3 HOH A 16 316 25 HOH HOH . C 3 HOH A 17 317 83 HOH HOH . C 3 HOH A 18 318 149 HOH HOH . C 3 HOH A 19 319 84 HOH HOH . C 3 HOH A 20 320 62 HOH HOH . C 3 HOH A 21 321 36 HOH HOH . C 3 HOH A 22 322 60 HOH HOH . C 3 HOH A 23 323 39 HOH HOH . C 3 HOH A 24 324 86 HOH HOH . C 3 HOH A 25 325 15 HOH HOH . C 3 HOH A 26 326 7 HOH HOH . C 3 HOH A 27 327 57 HOH HOH . C 3 HOH A 28 328 142 HOH HOH . C 3 HOH A 29 329 134 HOH HOH . C 3 HOH A 30 330 153 HOH HOH . C 3 HOH A 31 331 120 HOH HOH . C 3 HOH A 32 332 121 HOH HOH . C 3 HOH A 33 333 54 HOH HOH . C 3 HOH A 34 334 16 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 97 HOH HOH . C 3 HOH A 37 337 18 HOH HOH . C 3 HOH A 38 338 45 HOH HOH . C 3 HOH A 39 339 100 HOH HOH . C 3 HOH A 40 340 1 HOH HOH . C 3 HOH A 41 341 47 HOH HOH . C 3 HOH A 42 342 115 HOH HOH . C 3 HOH A 43 343 13 HOH HOH . C 3 HOH A 44 344 29 HOH HOH . C 3 HOH A 45 345 65 HOH HOH . C 3 HOH A 46 346 6 HOH HOH . C 3 HOH A 47 347 38 HOH HOH . C 3 HOH A 48 348 31 HOH HOH . C 3 HOH A 49 349 135 HOH HOH . C 3 HOH A 50 350 145 HOH HOH . C 3 HOH A 51 351 79 HOH HOH . C 3 HOH A 52 352 2 HOH HOH . C 3 HOH A 53 353 30 HOH HOH . C 3 HOH A 54 354 77 HOH HOH . C 3 HOH A 55 355 10 HOH HOH . C 3 HOH A 56 356 99 HOH HOH . C 3 HOH A 57 357 14 HOH HOH . C 3 HOH A 58 358 87 HOH HOH . C 3 HOH A 59 359 50 HOH HOH . C 3 HOH A 60 360 23 HOH HOH . C 3 HOH A 61 361 44 HOH HOH . C 3 HOH A 62 362 128 HOH HOH . C 3 HOH A 63 363 8 HOH HOH . C 3 HOH A 64 364 19 HOH HOH . C 3 HOH A 65 365 89 HOH HOH . C 3 HOH A 66 366 48 HOH HOH . C 3 HOH A 67 367 116 HOH HOH . C 3 HOH A 68 368 32 HOH HOH . C 3 HOH A 69 369 107 HOH HOH . C 3 HOH A 70 370 67 HOH HOH . C 3 HOH A 71 371 42 HOH HOH . C 3 HOH A 72 372 127 HOH HOH . C 3 HOH A 73 373 4 HOH HOH . C 3 HOH A 74 374 144 HOH HOH . C 3 HOH A 75 375 52 HOH HOH . C 3 HOH A 76 376 49 HOH HOH . C 3 HOH A 77 377 123 HOH HOH . C 3 HOH A 78 378 12 HOH HOH . C 3 HOH A 79 379 3 HOH HOH . C 3 HOH A 80 380 138 HOH HOH . C 3 HOH A 81 381 140 HOH HOH . C 3 HOH A 82 382 5 HOH HOH . C 3 HOH A 83 383 11 HOH HOH . C 3 HOH A 84 384 40 HOH HOH . C 3 HOH A 85 385 73 HOH HOH . C 3 HOH A 86 386 51 HOH HOH . C 3 HOH A 87 387 92 HOH HOH . C 3 HOH A 88 388 104 HOH HOH . C 3 HOH A 89 389 53 HOH HOH . C 3 HOH A 90 390 22 HOH HOH . C 3 HOH A 91 391 17 HOH HOH . C 3 HOH A 92 392 125 HOH HOH . C 3 HOH A 93 393 21 HOH HOH . C 3 HOH A 94 394 26 HOH HOH . C 3 HOH A 95 395 34 HOH HOH . C 3 HOH A 96 396 152 HOH HOH . C 3 HOH A 97 397 122 HOH HOH . C 3 HOH A 98 398 43 HOH HOH . C 3 HOH A 99 399 91 HOH HOH . C 3 HOH A 100 400 143 HOH HOH . C 3 HOH A 101 401 9 HOH HOH . C 3 HOH A 102 402 27 HOH HOH . C 3 HOH A 103 403 93 HOH HOH . C 3 HOH A 104 404 20 HOH HOH . C 3 HOH A 105 405 81 HOH HOH . C 3 HOH A 106 406 33 HOH HOH . C 3 HOH A 107 407 70 HOH HOH . C 3 HOH A 108 408 41 HOH HOH . C 3 HOH A 109 409 147 HOH HOH . C 3 HOH A 110 410 75 HOH HOH . C 3 HOH A 111 411 78 HOH HOH . C 3 HOH A 112 412 66 HOH HOH . C 3 HOH A 113 413 136 HOH HOH . C 3 HOH A 114 414 101 HOH HOH . C 3 HOH A 115 415 56 HOH HOH . C 3 HOH A 116 416 64 HOH HOH . C 3 HOH A 117 417 24 HOH HOH . C 3 HOH A 118 418 55 HOH HOH . C 3 HOH A 119 419 131 HOH HOH . C 3 HOH A 120 420 133 HOH HOH . C 3 HOH A 121 421 103 HOH HOH . C 3 HOH A 122 422 59 HOH HOH . C 3 HOH A 123 423 154 HOH HOH . C 3 HOH A 124 424 113 HOH HOH . C 3 HOH A 125 425 95 HOH HOH . C 3 HOH A 126 426 96 HOH HOH . C 3 HOH A 127 427 111 HOH HOH . C 3 HOH A 128 428 141 HOH HOH . C 3 HOH A 129 429 82 HOH HOH . C 3 HOH A 130 430 105 HOH HOH . C 3 HOH A 131 431 80 HOH HOH . C 3 HOH A 132 432 139 HOH HOH . C 3 HOH A 133 433 109 HOH HOH . C 3 HOH A 134 434 150 HOH HOH . C 3 HOH A 135 435 118 HOH HOH . C 3 HOH A 136 436 151 HOH HOH . C 3 HOH A 137 437 102 HOH HOH . C 3 HOH A 138 438 126 HOH HOH . C 3 HOH A 139 439 28 HOH HOH . C 3 HOH A 140 440 114 HOH HOH . C 3 HOH A 141 441 108 HOH HOH . C 3 HOH A 142 442 117 HOH HOH . C 3 HOH A 143 443 98 HOH HOH . C 3 HOH A 144 444 46 HOH HOH . C 3 HOH A 145 445 110 HOH HOH . C 3 HOH A 146 446 74 HOH HOH . C 3 HOH A 147 447 148 HOH HOH . C 3 HOH A 148 448 132 HOH HOH . C 3 HOH A 149 449 61 HOH HOH . C 3 HOH A 150 450 69 HOH HOH . C 3 HOH A 151 451 129 HOH HOH . C 3 HOH A 152 452 63 HOH HOH . C 3 HOH A 153 453 71 HOH HOH . C 3 HOH A 154 454 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BVF . . . B 2 12.439 23.424 7.918 1 51.39 ? C1 BVF 201 A 1 HETATM 2 C C2 BVF . . . B 2 12.351 24.533 8.744 1 52.27 ? C2 BVF 201 A 1 HETATM 3 C C3 BVF . . . B 2 11.501 24.472 9.839 1 52.77 ? C3 BVF 201 A 1 HETATM 4 C C4 BVF . . . B 2 10.772 23.314 10.071 1 52.21 ? C4 BVF 201 A 1 HETATM 5 C C5 BVF . . . B 2 10.925 22.254 9.191 1 52.15 ? C5 BVF 201 A 1 HETATM 6 N N6 BVF . . . B 2 11.739 22.332 8.156 1 53.11 ? N6 BVF 201 A 1 HETATM 7 N N7 BVF . . . B 2 10.177 21.031 9.417 1 55.81 ? N7 BVF 201 A 1 HETATM 8 C C8 BVF . . . B 2 11.368 25.667 10.779 1 53.17 ? C8 BVF 201 A 1 HETATM 9 H H1 BVF . . . B 2 13.004 23.45 7.18 1 61.69 ? H1 BVF 201 A 1 HETATM 10 H H2 BVF . . . B 2 12.847 25.299 8.568 1 62.75 ? H2 BVF 201 A 1 HETATM 11 H H4 BVF . . . B 2 10.198 23.25 10.8 1 62.68 ? H4 BVF 201 A 1 HETATM 12 H HN71 BVF . . . B 2 9.994 20.781 10.219 1 67.01 ? HN71 BVF 201 A 1 HETATM 13 H HN72 BVF . . . B 2 9.917 20.556 8.749 1 67.01 ? HN72 BVF 201 A 1 HETATM 14 H H81 BVF . . . B 2 11.995 25.572 11.513 1 63.84 ? H81 BVF 201 A 1 HETATM 15 H H82 BVF . . . B 2 10.464 25.704 11.128 1 63.84 ? H82 BVF 201 A 1 HETATM 16 H H83 BVF . . . B 2 11.561 26.484 10.293 1 63.84 ? H83 BVF 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #