data_5RVM # _model_server_result.job_id kfi2XD_LyDmR03NbwlFraA _model_server_result.datetime_utc '2024-11-13 17:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5RVM # _exptl.entry_id 5RVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.136 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-HYDROXYBENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.35 _cell.angle_gamma 90 _cell.entry_id 5RVM _cell.length_a 139.36 _cell.length_b 29.61 _cell.length_c 37.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N O2' _chem_comp.formula_weight 137.136 _chem_comp.id HBD _chem_comp.mon_nstd_flag . _chem_comp.name 4-HYDROXYBENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HBD doub 129 n y C1 C6 HBD sing 130 n y C1 C1' HBD sing 131 n n C2 C3 HBD sing 132 n y C2 H2 HBD sing 133 n n C3 C4 HBD doub 134 n y C3 H3 HBD sing 135 n n C4 C5 HBD sing 136 n y C4 O4 HBD sing 137 n n C5 C6 HBD doub 138 n y C5 H5 HBD sing 139 n n C6 H6 HBD sing 140 n n C1' O1' HBD doub 141 n n C1' N1' HBD sing 142 n n N1' "HN'1" HBD sing 143 n n N1' "HN'2" HBD sing 144 n n O4 HO4 HBD sing 145 n n # _atom_sites.entry_id 5RVM _atom_sites.fract_transf_matrix[1][1] 0.007176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001703 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HBD A 1 201 201 HBD LIG . C 3 HOH A 1 301 272 HOH HOH . C 3 HOH A 2 302 232 HOH HOH . C 3 HOH A 3 303 152 HOH HOH . C 3 HOH A 4 304 231 HOH HOH . C 3 HOH A 5 305 211 HOH HOH . C 3 HOH A 6 306 222 HOH HOH . C 3 HOH A 7 307 216 HOH HOH . C 3 HOH A 8 308 147 HOH HOH . C 3 HOH A 9 309 189 HOH HOH . C 3 HOH A 10 310 133 HOH HOH . C 3 HOH A 11 311 225 HOH HOH . C 3 HOH A 12 312 135 HOH HOH . C 3 HOH A 13 313 158 HOH HOH . C 3 HOH A 14 314 118 HOH HOH . C 3 HOH A 15 315 212 HOH HOH . C 3 HOH A 16 316 40 HOH HOH . C 3 HOH A 17 317 172 HOH HOH . C 3 HOH A 18 318 267 HOH HOH . C 3 HOH A 19 319 236 HOH HOH . C 3 HOH A 20 320 144 HOH HOH . C 3 HOH A 21 321 122 HOH HOH . C 3 HOH A 22 322 166 HOH HOH . C 3 HOH A 23 323 71 HOH HOH . C 3 HOH A 24 324 57 HOH HOH . C 3 HOH A 25 325 248 HOH HOH . C 3 HOH A 26 326 163 HOH HOH . C 3 HOH A 27 327 116 HOH HOH . C 3 HOH A 28 328 32 HOH HOH . C 3 HOH A 29 329 89 HOH HOH . C 3 HOH A 30 330 90 HOH HOH . C 3 HOH A 31 331 190 HOH HOH . C 3 HOH A 32 332 7 HOH HOH . C 3 HOH A 33 333 171 HOH HOH . C 3 HOH A 34 334 113 HOH HOH . C 3 HOH A 35 335 129 HOH HOH . C 3 HOH A 36 336 13 HOH HOH . C 3 HOH A 37 337 270 HOH HOH . C 3 HOH A 38 338 261 HOH HOH . C 3 HOH A 39 339 146 HOH HOH . C 3 HOH A 40 340 31 HOH HOH . C 3 HOH A 41 341 188 HOH HOH . C 3 HOH A 42 342 19 HOH HOH . C 3 HOH A 43 343 168 HOH HOH . C 3 HOH A 44 344 22 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 220 HOH HOH . C 3 HOH A 47 347 202 HOH HOH . C 3 HOH A 48 348 3 HOH HOH . C 3 HOH A 49 349 34 HOH HOH . C 3 HOH A 50 350 73 HOH HOH . C 3 HOH A 51 351 43 HOH HOH . C 3 HOH A 52 352 10 HOH HOH . C 3 HOH A 53 353 114 HOH HOH . C 3 HOH A 54 354 97 HOH HOH . C 3 HOH A 55 355 109 HOH HOH . C 3 HOH A 56 356 30 HOH HOH . C 3 HOH A 57 357 42 HOH HOH . C 3 HOH A 58 358 258 HOH HOH . C 3 HOH A 59 359 98 HOH HOH . C 3 HOH A 60 360 91 HOH HOH . C 3 HOH A 61 361 69 HOH HOH . C 3 HOH A 62 362 143 HOH HOH . C 3 HOH A 63 363 204 HOH HOH . C 3 HOH A 64 364 191 HOH HOH . C 3 HOH A 65 365 213 HOH HOH . C 3 HOH A 66 366 70 HOH HOH . C 3 HOH A 67 367 39 HOH HOH . C 3 HOH A 68 368 23 HOH HOH . C 3 HOH A 69 369 4 HOH HOH . C 3 HOH A 70 370 58 HOH HOH . C 3 HOH A 71 371 208 HOH HOH . C 3 HOH A 72 372 48 HOH HOH . C 3 HOH A 73 373 33 HOH HOH . C 3 HOH A 74 374 170 HOH HOH . C 3 HOH A 75 375 82 HOH HOH . C 3 HOH A 76 376 38 HOH HOH . C 3 HOH A 77 377 18 HOH HOH . C 3 HOH A 78 378 15 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 224 HOH HOH . C 3 HOH A 81 381 1 HOH HOH . C 3 HOH A 82 382 193 HOH HOH . C 3 HOH A 83 383 50 HOH HOH . C 3 HOH A 84 384 95 HOH HOH . C 3 HOH A 85 385 72 HOH HOH . C 3 HOH A 86 386 44 HOH HOH . C 3 HOH A 87 387 112 HOH HOH . C 3 HOH A 88 388 47 HOH HOH . C 3 HOH A 89 389 76 HOH HOH . C 3 HOH A 90 390 26 HOH HOH . C 3 HOH A 91 391 87 HOH HOH . C 3 HOH A 92 392 46 HOH HOH . C 3 HOH A 93 393 37 HOH HOH . C 3 HOH A 94 394 81 HOH HOH . C 3 HOH A 95 395 5 HOH HOH . C 3 HOH A 96 396 111 HOH HOH . C 3 HOH A 97 397 8 HOH HOH . C 3 HOH A 98 398 12 HOH HOH . C 3 HOH A 99 399 17 HOH HOH . C 3 HOH A 100 400 134 HOH HOH . C 3 HOH A 101 401 63 HOH HOH . C 3 HOH A 102 402 125 HOH HOH . C 3 HOH A 103 403 238 HOH HOH . C 3 HOH A 104 404 28 HOH HOH . C 3 HOH A 105 405 137 HOH HOH . C 3 HOH A 106 406 149 HOH HOH . C 3 HOH A 107 407 217 HOH HOH . C 3 HOH A 108 408 140 HOH HOH . C 3 HOH A 109 409 173 HOH HOH . C 3 HOH A 110 410 65 HOH HOH . C 3 HOH A 111 411 103 HOH HOH . C 3 HOH A 112 412 266 HOH HOH . C 3 HOH A 113 413 117 HOH HOH . C 3 HOH A 114 414 62 HOH HOH . C 3 HOH A 115 415 88 HOH HOH . C 3 HOH A 116 416 21 HOH HOH . C 3 HOH A 117 417 175 HOH HOH . C 3 HOH A 118 418 174 HOH HOH . C 3 HOH A 119 419 77 HOH HOH . C 3 HOH A 120 420 271 HOH HOH . C 3 HOH A 121 421 59 HOH HOH . C 3 HOH A 122 422 120 HOH HOH . C 3 HOH A 123 423 36 HOH HOH . C 3 HOH A 124 424 99 HOH HOH . C 3 HOH A 125 425 265 HOH HOH . C 3 HOH A 126 426 128 HOH HOH . C 3 HOH A 127 427 185 HOH HOH . C 3 HOH A 128 428 27 HOH HOH . C 3 HOH A 129 429 209 HOH HOH . C 3 HOH A 130 430 75 HOH HOH . C 3 HOH A 131 431 184 HOH HOH . C 3 HOH A 132 432 2 HOH HOH . C 3 HOH A 133 433 49 HOH HOH . C 3 HOH A 134 434 233 HOH HOH . C 3 HOH A 135 435 9 HOH HOH . C 3 HOH A 136 436 268 HOH HOH . C 3 HOH A 137 437 107 HOH HOH . C 3 HOH A 138 438 139 HOH HOH . C 3 HOH A 139 439 148 HOH HOH . C 3 HOH A 140 440 92 HOH HOH . C 3 HOH A 141 441 160 HOH HOH . C 3 HOH A 142 442 157 HOH HOH . C 3 HOH A 143 443 130 HOH HOH . C 3 HOH A 144 444 20 HOH HOH . C 3 HOH A 145 445 53 HOH HOH . C 3 HOH A 146 446 80 HOH HOH . C 3 HOH A 147 447 274 HOH HOH . C 3 HOH A 148 448 235 HOH HOH . C 3 HOH A 149 449 223 HOH HOH . C 3 HOH A 150 450 201 HOH HOH . C 3 HOH A 151 451 61 HOH HOH . C 3 HOH A 152 452 14 HOH HOH . C 3 HOH A 153 453 252 HOH HOH . C 3 HOH A 154 454 101 HOH HOH . C 3 HOH A 155 455 242 HOH HOH . C 3 HOH A 156 456 280 HOH HOH . C 3 HOH A 157 457 106 HOH HOH . C 3 HOH A 158 458 124 HOH HOH . C 3 HOH A 159 459 228 HOH HOH . C 3 HOH A 160 460 203 HOH HOH . C 3 HOH A 161 461 255 HOH HOH . C 3 HOH A 162 462 67 HOH HOH . C 3 HOH A 163 463 199 HOH HOH . C 3 HOH A 164 464 86 HOH HOH . C 3 HOH A 165 465 110 HOH HOH . C 3 HOH A 166 466 93 HOH HOH . C 3 HOH A 167 467 142 HOH HOH . C 3 HOH A 168 468 56 HOH HOH . C 3 HOH A 169 469 94 HOH HOH . C 3 HOH A 170 470 11 HOH HOH . C 3 HOH A 171 471 54 HOH HOH . C 3 HOH A 172 472 84 HOH HOH . C 3 HOH A 173 473 182 HOH HOH . C 3 HOH A 174 474 195 HOH HOH . C 3 HOH A 175 475 127 HOH HOH . C 3 HOH A 176 476 51 HOH HOH . C 3 HOH A 177 477 154 HOH HOH . C 3 HOH A 178 478 180 HOH HOH . C 3 HOH A 179 479 64 HOH HOH . C 3 HOH A 180 480 145 HOH HOH . C 3 HOH A 181 481 24 HOH HOH . C 3 HOH A 182 482 153 HOH HOH . C 3 HOH A 183 483 115 HOH HOH . C 3 HOH A 184 484 16 HOH HOH . C 3 HOH A 185 485 277 HOH HOH . C 3 HOH A 186 486 6 HOH HOH . C 3 HOH A 187 487 100 HOH HOH . C 3 HOH A 188 488 207 HOH HOH . C 3 HOH A 189 489 197 HOH HOH . C 3 HOH A 190 490 229 HOH HOH . C 3 HOH A 191 491 105 HOH HOH . C 3 HOH A 192 492 179 HOH HOH . C 3 HOH A 193 493 205 HOH HOH . C 3 HOH A 194 494 278 HOH HOH . C 3 HOH A 195 495 245 HOH HOH . C 3 HOH A 196 496 215 HOH HOH . C 3 HOH A 197 497 83 HOH HOH . C 3 HOH A 198 498 25 HOH HOH . C 3 HOH A 199 499 156 HOH HOH . C 3 HOH A 200 500 131 HOH HOH . C 3 HOH A 201 501 41 HOH HOH . C 3 HOH A 202 502 237 HOH HOH . C 3 HOH A 203 503 29 HOH HOH . C 3 HOH A 204 504 102 HOH HOH . C 3 HOH A 205 505 194 HOH HOH . C 3 HOH A 206 506 68 HOH HOH . C 3 HOH A 207 507 155 HOH HOH . C 3 HOH A 208 508 254 HOH HOH . C 3 HOH A 209 509 234 HOH HOH . C 3 HOH A 210 510 275 HOH HOH . C 3 HOH A 211 511 52 HOH HOH . C 3 HOH A 212 512 141 HOH HOH . C 3 HOH A 213 513 138 HOH HOH . C 3 HOH A 214 514 162 HOH HOH . C 3 HOH A 215 515 136 HOH HOH . C 3 HOH A 216 516 273 HOH HOH . C 3 HOH A 217 517 240 HOH HOH . C 3 HOH A 218 518 246 HOH HOH . C 3 HOH A 219 519 150 HOH HOH . C 3 HOH A 220 520 256 HOH HOH . C 3 HOH A 221 521 198 HOH HOH . C 3 HOH A 222 522 74 HOH HOH . C 3 HOH A 223 523 249 HOH HOH . C 3 HOH A 224 524 206 HOH HOH . C 3 HOH A 225 525 186 HOH HOH . C 3 HOH A 226 526 227 HOH HOH . C 3 HOH A 227 527 104 HOH HOH . C 3 HOH A 228 528 257 HOH HOH . C 3 HOH A 229 529 183 HOH HOH . C 3 HOH A 230 530 35 HOH HOH . C 3 HOH A 231 531 164 HOH HOH . C 3 HOH A 232 532 259 HOH HOH . C 3 HOH A 233 533 169 HOH HOH . C 3 HOH A 234 534 243 HOH HOH . C 3 HOH A 235 535 241 HOH HOH . C 3 HOH A 236 536 176 HOH HOH . C 3 HOH A 237 537 96 HOH HOH . C 3 HOH A 238 538 269 HOH HOH . C 3 HOH A 239 539 214 HOH HOH . C 3 HOH A 240 540 253 HOH HOH . C 3 HOH A 241 541 262 HOH HOH . C 3 HOH A 242 542 78 HOH HOH . C 3 HOH A 243 543 167 HOH HOH . C 3 HOH A 244 544 181 HOH HOH . C 3 HOH A 245 545 85 HOH HOH . C 3 HOH A 246 546 260 HOH HOH . C 3 HOH A 247 547 55 HOH HOH . C 3 HOH A 248 548 165 HOH HOH . C 3 HOH A 249 549 210 HOH HOH . C 3 HOH A 250 550 177 HOH HOH . C 3 HOH A 251 551 119 HOH HOH . C 3 HOH A 252 552 121 HOH HOH . C 3 HOH A 253 553 159 HOH HOH . C 3 HOH A 254 554 218 HOH HOH . C 3 HOH A 255 555 244 HOH HOH . C 3 HOH A 256 556 192 HOH HOH . C 3 HOH A 257 557 126 HOH HOH . C 3 HOH A 258 558 108 HOH HOH . C 3 HOH A 259 559 151 HOH HOH . C 3 HOH A 260 560 123 HOH HOH . C 3 HOH A 261 561 66 HOH HOH . C 3 HOH A 262 562 161 HOH HOH . C 3 HOH A 263 563 263 HOH HOH . C 3 HOH A 264 564 60 HOH HOH . C 3 HOH A 265 565 226 HOH HOH . C 3 HOH A 266 566 200 HOH HOH . C 3 HOH A 267 567 132 HOH HOH . C 3 HOH A 268 568 196 HOH HOH . C 3 HOH A 269 569 239 HOH HOH . C 3 HOH A 270 570 187 HOH HOH . C 3 HOH A 271 571 250 HOH HOH . C 3 HOH A 272 572 251 HOH HOH . C 3 HOH A 273 573 279 HOH HOH . C 3 HOH A 274 574 219 HOH HOH . C 3 HOH A 275 575 264 HOH HOH . C 3 HOH A 276 576 276 HOH HOH . C 3 HOH A 277 577 230 HOH HOH . C 3 HOH A 278 578 178 HOH HOH . C 3 HOH A 279 579 221 HOH HOH . C 3 HOH A 280 580 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HBD . . . B 2 10.315 4.018 18.791 0.59 26.54 ? C1 HBD 201 A 1 HETATM 2 C C2 HBD . . . B 2 10.362 3.037 19.776 0.59 26.51 ? C2 HBD 201 A 1 HETATM 3 C C3 HBD . . . B 2 10.705 1.732 19.452 0.59 26.06 ? C3 HBD 201 A 1 HETATM 4 C C4 HBD . . . B 2 11.001 1.398 18.143 0.59 25.74 ? C4 HBD 201 A 1 HETATM 5 C C5 HBD . . . B 2 10.955 2.371 17.158 0.59 25.26 ? C5 HBD 201 A 1 HETATM 6 C C6 HBD . . . B 2 10.613 3.669 17.479 0.59 25.91 ? C6 HBD 201 A 1 HETATM 7 C C1' HBD . . . B 2 9.931 5.463 19.154 0.59 27.51 ? C1' HBD 201 A 1 HETATM 8 O O1' HBD . . . B 2 10.218 5.923 20.204 0.59 28.11 ? O1' HBD 201 A 1 HETATM 9 N N1' HBD . . . B 2 9.201 6.321 18.236 0.59 25.45 ? N1' HBD 201 A 1 HETATM 10 O O4 HBD . . . B 2 11.342 0.084 17.806 0.59 23.69 ? O4 HBD 201 A 1 HETATM 11 H H2 HBD . . . B 2 10.163 3.257 20.657 0.59 31.84 ? H2 HBD 201 A 1 HETATM 12 H H3 HBD . . . B 2 10.734 1.081 20.115 0.59 31.29 ? H3 HBD 201 A 1 HETATM 13 H H5 HBD . . . B 2 11.152 2.148 16.277 0.59 30.34 ? H5 HBD 201 A 1 HETATM 14 H H6 HBD . . . B 2 10.584 4.316 16.812 0.59 31.12 ? H6 HBD 201 A 1 HETATM 15 H "HN'1" HBD . . . B 2 8.972 6.025 17.462 0.59 30.56 ? "HN'1" HBD 201 A 1 HETATM 16 H "HN'2" HBD . . . B 2 8.999 7.125 18.466 0.59 30.56 ? "HN'2" HBD 201 A 1 HETATM 17 H HO4 HBD . . . B 2 11.487 0.034 16.97 0.59 28.45 ? HO4 HBD 201 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #