data_5RVT # _model_server_result.job_id qlfABBgpUB8bSXXEVnsyYw _model_server_result.datetime_utc '2024-11-08 06:49:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5RVT # _exptl.entry_id 5RVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.184 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-methyl-1H-indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.08 _cell.angle_gamma 90 _cell.entry_id 5RVT _cell.length_a 129.81 _cell.length_b 30.14 _cell.length_c 39.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H9 N O2' _chem_comp.formula_weight 175.184 _chem_comp.id 4BL _chem_comp.mon_nstd_flag . _chem_comp.name '6-methyl-1H-indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C1 4BL doub 1 n y C5 C1 4BL sing 2 n n C1 N2 4BL sing 3 n y C4 N2 4BL sing 4 n y C3 C6 4BL sing 5 n y C3 H3 4BL sing 6 n n C6 C4 4BL sing 7 n y C4 C7 4BL doub 8 n y O10 C5 4BL doub 9 n n C5 O8 4BL sing 10 n n C9 C6 4BL doub 11 n y C11 C7 4BL sing 12 n y C7 H7 4BL sing 13 n n O8 HO8 4BL sing 14 n n C9 C12 4BL sing 15 n y C9 H9 4BL sing 16 n n C12 C11 4BL doub 17 n y C11 C13 4BL sing 18 n n C12 H12 4BL sing 19 n n C13 H13 4BL sing 20 n n C13 H13A 4BL sing 21 n n C13 H13B 4BL sing 22 n n N2 HN2 4BL sing 23 n n # _atom_sites.entry_id 5RVT _atom_sites.fract_transf_matrix[1][1] 0.007704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000957 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4BL A 1 201 201 4BL LIG . C 3 HOH A 1 301 147 HOH HOH . C 3 HOH A 2 302 177 HOH HOH . C 3 HOH A 3 303 86 HOH HOH . C 3 HOH A 4 304 222 HOH HOH . C 3 HOH A 5 305 213 HOH HOH . C 3 HOH A 6 306 38 HOH HOH . C 3 HOH A 7 307 163 HOH HOH . C 3 HOH A 8 308 238 HOH HOH . C 3 HOH A 9 309 172 HOH HOH . C 3 HOH A 10 310 153 HOH HOH . C 3 HOH A 11 311 60 HOH HOH . C 3 HOH A 12 312 96 HOH HOH . C 3 HOH A 13 313 74 HOH HOH . C 3 HOH A 14 314 35 HOH HOH . C 3 HOH A 15 315 57 HOH HOH . C 3 HOH A 16 316 248 HOH HOH . C 3 HOH A 17 317 81 HOH HOH . C 3 HOH A 18 318 90 HOH HOH . C 3 HOH A 19 319 139 HOH HOH . C 3 HOH A 20 320 59 HOH HOH . C 3 HOH A 21 321 142 HOH HOH . C 3 HOH A 22 322 56 HOH HOH . C 3 HOH A 23 323 108 HOH HOH . C 3 HOH A 24 324 8 HOH HOH . C 3 HOH A 25 325 151 HOH HOH . C 3 HOH A 26 326 31 HOH HOH . C 3 HOH A 27 327 107 HOH HOH . C 3 HOH A 28 328 231 HOH HOH . C 3 HOH A 29 329 11 HOH HOH . C 3 HOH A 30 330 230 HOH HOH . C 3 HOH A 31 331 149 HOH HOH . C 3 HOH A 32 332 37 HOH HOH . C 3 HOH A 33 333 80 HOH HOH . C 3 HOH A 34 334 50 HOH HOH . C 3 HOH A 35 335 25 HOH HOH . C 3 HOH A 36 336 240 HOH HOH . C 3 HOH A 37 337 218 HOH HOH . C 3 HOH A 38 338 23 HOH HOH . C 3 HOH A 39 339 79 HOH HOH . C 3 HOH A 40 340 100 HOH HOH . C 3 HOH A 41 341 143 HOH HOH . C 3 HOH A 42 342 48 HOH HOH . C 3 HOH A 43 343 6 HOH HOH . C 3 HOH A 44 344 17 HOH HOH . C 3 HOH A 45 345 62 HOH HOH . C 3 HOH A 46 346 69 HOH HOH . C 3 HOH A 47 347 138 HOH HOH . C 3 HOH A 48 348 22 HOH HOH . C 3 HOH A 49 349 220 HOH HOH . C 3 HOH A 50 350 9 HOH HOH . C 3 HOH A 51 351 173 HOH HOH . C 3 HOH A 52 352 39 HOH HOH . C 3 HOH A 53 353 1 HOH HOH . C 3 HOH A 54 354 44 HOH HOH . C 3 HOH A 55 355 183 HOH HOH . C 3 HOH A 56 356 84 HOH HOH . C 3 HOH A 57 357 76 HOH HOH . C 3 HOH A 58 358 83 HOH HOH . C 3 HOH A 59 359 243 HOH HOH . C 3 HOH A 60 360 45 HOH HOH . C 3 HOH A 61 361 41 HOH HOH . C 3 HOH A 62 362 97 HOH HOH . C 3 HOH A 63 363 200 HOH HOH . C 3 HOH A 64 364 106 HOH HOH . C 3 HOH A 65 365 61 HOH HOH . C 3 HOH A 66 366 105 HOH HOH . C 3 HOH A 67 367 14 HOH HOH . C 3 HOH A 68 368 47 HOH HOH . C 3 HOH A 69 369 54 HOH HOH . C 3 HOH A 70 370 2 HOH HOH . C 3 HOH A 71 371 112 HOH HOH . C 3 HOH A 72 372 18 HOH HOH . C 3 HOH A 73 373 129 HOH HOH . C 3 HOH A 74 374 131 HOH HOH . C 3 HOH A 75 375 98 HOH HOH . C 3 HOH A 76 376 123 HOH HOH . C 3 HOH A 77 377 136 HOH HOH . C 3 HOH A 78 378 43 HOH HOH . C 3 HOH A 79 379 5 HOH HOH . C 3 HOH A 80 380 128 HOH HOH . C 3 HOH A 81 381 182 HOH HOH . C 3 HOH A 82 382 188 HOH HOH . C 3 HOH A 83 383 127 HOH HOH . C 3 HOH A 84 384 28 HOH HOH . C 3 HOH A 85 385 3 HOH HOH . C 3 HOH A 86 386 160 HOH HOH . C 3 HOH A 87 387 104 HOH HOH . C 3 HOH A 88 388 16 HOH HOH . C 3 HOH A 89 389 134 HOH HOH . C 3 HOH A 90 390 168 HOH HOH . C 3 HOH A 91 391 51 HOH HOH . C 3 HOH A 92 392 159 HOH HOH . C 3 HOH A 93 393 124 HOH HOH . C 3 HOH A 94 394 91 HOH HOH . C 3 HOH A 95 395 33 HOH HOH . C 3 HOH A 96 396 67 HOH HOH . C 3 HOH A 97 397 152 HOH HOH . C 3 HOH A 98 398 36 HOH HOH . C 3 HOH A 99 399 42 HOH HOH . C 3 HOH A 100 400 78 HOH HOH . C 3 HOH A 101 401 116 HOH HOH . C 3 HOH A 102 402 46 HOH HOH . C 3 HOH A 103 403 7 HOH HOH . C 3 HOH A 104 404 71 HOH HOH . C 3 HOH A 105 405 247 HOH HOH . C 3 HOH A 106 406 13 HOH HOH . C 3 HOH A 107 407 92 HOH HOH . C 3 HOH A 108 408 214 HOH HOH . C 3 HOH A 109 409 195 HOH HOH . C 3 HOH A 110 410 119 HOH HOH . C 3 HOH A 111 411 115 HOH HOH . C 3 HOH A 112 412 137 HOH HOH . C 3 HOH A 113 413 65 HOH HOH . C 3 HOH A 114 414 171 HOH HOH . C 3 HOH A 115 415 88 HOH HOH . C 3 HOH A 116 416 30 HOH HOH . C 3 HOH A 117 417 221 HOH HOH . C 3 HOH A 118 418 210 HOH HOH . C 3 HOH A 119 419 125 HOH HOH . C 3 HOH A 120 420 19 HOH HOH . C 3 HOH A 121 421 72 HOH HOH . C 3 HOH A 122 422 121 HOH HOH . C 3 HOH A 123 423 110 HOH HOH . C 3 HOH A 124 424 235 HOH HOH . C 3 HOH A 125 425 73 HOH HOH . C 3 HOH A 126 426 21 HOH HOH . C 3 HOH A 127 427 34 HOH HOH . C 3 HOH A 128 428 75 HOH HOH . C 3 HOH A 129 429 145 HOH HOH . C 3 HOH A 130 430 77 HOH HOH . C 3 HOH A 131 431 12 HOH HOH . C 3 HOH A 132 432 209 HOH HOH . C 3 HOH A 133 433 27 HOH HOH . C 3 HOH A 134 434 186 HOH HOH . C 3 HOH A 135 435 217 HOH HOH . C 3 HOH A 136 436 15 HOH HOH . C 3 HOH A 137 437 29 HOH HOH . C 3 HOH A 138 438 150 HOH HOH . C 3 HOH A 139 439 10 HOH HOH . C 3 HOH A 140 440 109 HOH HOH . C 3 HOH A 141 441 204 HOH HOH . C 3 HOH A 142 442 20 HOH HOH . C 3 HOH A 143 443 4 HOH HOH . C 3 HOH A 144 444 190 HOH HOH . C 3 HOH A 145 445 197 HOH HOH . C 3 HOH A 146 446 192 HOH HOH . C 3 HOH A 147 447 53 HOH HOH . C 3 HOH A 148 448 232 HOH HOH . C 3 HOH A 149 449 95 HOH HOH . C 3 HOH A 150 450 40 HOH HOH . C 3 HOH A 151 451 228 HOH HOH . C 3 HOH A 152 452 58 HOH HOH . C 3 HOH A 153 453 26 HOH HOH . C 3 HOH A 154 454 93 HOH HOH . C 3 HOH A 155 455 99 HOH HOH . C 3 HOH A 156 456 122 HOH HOH . C 3 HOH A 157 457 170 HOH HOH . C 3 HOH A 158 458 117 HOH HOH . C 3 HOH A 159 459 24 HOH HOH . C 3 HOH A 160 460 216 HOH HOH . C 3 HOH A 161 461 55 HOH HOH . C 3 HOH A 162 462 94 HOH HOH . C 3 HOH A 163 463 120 HOH HOH . C 3 HOH A 164 464 32 HOH HOH . C 3 HOH A 165 465 180 HOH HOH . C 3 HOH A 166 466 87 HOH HOH . C 3 HOH A 167 467 148 HOH HOH . C 3 HOH A 168 468 202 HOH HOH . C 3 HOH A 169 469 176 HOH HOH . C 3 HOH A 170 470 157 HOH HOH . C 3 HOH A 171 471 193 HOH HOH . C 3 HOH A 172 472 239 HOH HOH . C 3 HOH A 173 473 212 HOH HOH . C 3 HOH A 174 474 156 HOH HOH . C 3 HOH A 175 475 199 HOH HOH . C 3 HOH A 176 476 187 HOH HOH . C 3 HOH A 177 477 66 HOH HOH . C 3 HOH A 178 478 174 HOH HOH . C 3 HOH A 179 479 102 HOH HOH . C 3 HOH A 180 480 49 HOH HOH . C 3 HOH A 181 481 130 HOH HOH . C 3 HOH A 182 482 111 HOH HOH . C 3 HOH A 183 483 126 HOH HOH . C 3 HOH A 184 484 194 HOH HOH . C 3 HOH A 185 485 205 HOH HOH . C 3 HOH A 186 486 224 HOH HOH . C 3 HOH A 187 487 198 HOH HOH . C 3 HOH A 188 488 184 HOH HOH . C 3 HOH A 189 489 196 HOH HOH . C 3 HOH A 190 490 241 HOH HOH . C 3 HOH A 191 491 103 HOH HOH . C 3 HOH A 192 492 246 HOH HOH . C 3 HOH A 193 493 189 HOH HOH . C 3 HOH A 194 494 165 HOH HOH . C 3 HOH A 195 495 133 HOH HOH . C 3 HOH A 196 496 191 HOH HOH . C 3 HOH A 197 497 166 HOH HOH . C 3 HOH A 198 498 236 HOH HOH . C 3 HOH A 199 499 144 HOH HOH . C 3 HOH A 200 500 52 HOH HOH . C 3 HOH A 201 501 169 HOH HOH . C 3 HOH A 202 502 70 HOH HOH . C 3 HOH A 203 503 64 HOH HOH . C 3 HOH A 204 504 211 HOH HOH . C 3 HOH A 205 505 175 HOH HOH . C 3 HOH A 206 506 132 HOH HOH . C 3 HOH A 207 507 234 HOH HOH . C 3 HOH A 208 508 101 HOH HOH . C 3 HOH A 209 509 242 HOH HOH . C 3 HOH A 210 510 63 HOH HOH . C 3 HOH A 211 511 244 HOH HOH . C 3 HOH A 212 512 155 HOH HOH . C 3 HOH A 213 513 185 HOH HOH . C 3 HOH A 214 514 162 HOH HOH . C 3 HOH A 215 515 114 HOH HOH . C 3 HOH A 216 516 229 HOH HOH . C 3 HOH A 217 517 207 HOH HOH . C 3 HOH A 218 518 113 HOH HOH . C 3 HOH A 219 519 249 HOH HOH . C 3 HOH A 220 520 179 HOH HOH . C 3 HOH A 221 521 219 HOH HOH . C 3 HOH A 222 522 203 HOH HOH . C 3 HOH A 223 523 178 HOH HOH . C 3 HOH A 224 524 140 HOH HOH . C 3 HOH A 225 525 164 HOH HOH . C 3 HOH A 226 526 215 HOH HOH . C 3 HOH A 227 527 158 HOH HOH . C 3 HOH A 228 528 146 HOH HOH . C 3 HOH A 229 529 223 HOH HOH . C 3 HOH A 230 530 89 HOH HOH . C 3 HOH A 231 531 118 HOH HOH . C 3 HOH A 232 532 226 HOH HOH . C 3 HOH A 233 533 167 HOH HOH . C 3 HOH A 234 534 245 HOH HOH . C 3 HOH A 235 535 208 HOH HOH . C 3 HOH A 236 536 201 HOH HOH . C 3 HOH A 237 537 141 HOH HOH . C 3 HOH A 238 538 82 HOH HOH . C 3 HOH A 239 539 206 HOH HOH . C 3 HOH A 240 540 161 HOH HOH . C 3 HOH A 241 541 68 HOH HOH . C 3 HOH A 242 542 154 HOH HOH . C 3 HOH A 243 543 225 HOH HOH . C 3 HOH A 244 544 227 HOH HOH . C 3 HOH A 245 545 237 HOH HOH . C 3 HOH A 246 546 85 HOH HOH . C 3 HOH A 247 547 233 HOH HOH . C 3 HOH A 248 548 135 HOH HOH . C 3 HOH A 249 549 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4BL . . . B 2 10.779 1.879 19.021 0.61 42.88 ? C1 4BL 201 A 1 HETATM 2 N N2 4BL . . . B 2 10.859 2.672 20.071 0.61 41.1 ? N2 4BL 201 A 1 HETATM 3 C C3 4BL . . . B 2 10.176 2.556 17.977 0.61 41.48 ? C3 4BL 201 A 1 HETATM 4 C C4 4BL . . . B 2 10.333 3.867 19.78 0.61 38.15 ? C4 4BL 201 A 1 HETATM 5 C C5 4BL . . . B 2 11.277 0.44 18.964 0.61 46.04 ? C5 4BL 201 A 1 HETATM 6 C C6 4BL . . . B 2 9.892 3.835 18.483 0.61 38.46 ? C6 4BL 201 A 1 HETATM 7 C C7 4BL . . . B 2 10.178 5.031 20.54 0.61 34.69 ? C7 4BL 201 A 1 HETATM 8 O O8 4BL . . . B 2 11.696 -0.119 20.01 0.61 46.88 ? O8 4BL 201 A 1 HETATM 9 C C9 4BL . . . B 2 9.293 4.96 17.918 0.61 33.85 ? C9 4BL 201 A 1 HETATM 10 O O10 4BL . . . B 2 11.276 -0.186 17.875 0.61 46.73 -1 O10 4BL 201 A 1 HETATM 11 C C11 4BL . . . B 2 9.58 6.147 19.98 0.61 33.27 ? C11 4BL 201 A 1 HETATM 12 C C12 4BL . . . B 2 9.14 6.111 18.667 0.61 34.98 ? C12 4BL 201 A 1 HETATM 13 C C13 4BL . . . B 2 9.409 7.427 20.79 0.61 29.83 ? C13 4BL 201 A 1 HETATM 14 H H3 4BL . . . B 2 9.994 2.233 17.124 0.61 49.8 ? H3 4BL 201 A 1 HETATM 15 H H7 4BL . . . B 2 10.475 5.055 21.421 0.61 41.65 ? H7 4BL 201 A 1 HETATM 16 H H9 4BL . . . B 2 8.996 4.936 17.037 0.61 40.63 ? H9 4BL 201 A 1 HETATM 17 H H12 4BL . . . B 2 8.741 6.861 18.29 0.61 41.99 ? H12 4BL 201 A 1 HETATM 18 H H13 4BL . . . B 2 8.506 7.763 20.677 0.61 35.81 ? H13 4BL 201 A 1 HETATM 19 H H13A 4BL . . . B 2 10.043 8.093 20.481 0.61 35.81 ? H13A 4BL 201 A 1 HETATM 20 H H13B 4BL . . . B 2 9.569 7.24 21.728 0.61 35.81 ? H13B 4BL 201 A 1 HETATM 21 H HN2 4BL . . . B 2 11.202 2.455 20.829 0.61 49.33 ? HN2 4BL 201 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #