data_5RVU # _model_server_result.job_id euIZkICy4YV1qU_lEZIyPQ _model_server_result.datetime_utc '2024-11-21 10:18:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5RVU # _exptl.entry_id 5RVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-phenylpyridine-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.21 _cell.angle_gamma 90 _cell.entry_id 5RVU _cell.length_a 139.02 _cell.length_b 29.63 _cell.length_c 37.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H9 N O2' _chem_comp.formula_weight 199.205 _chem_comp.id 6P3 _chem_comp.mon_nstd_flag . _chem_comp.name '6-phenylpyridine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 6P3 doub 1 n y C4 C5 6P3 sing 2 n y C3 C2 6P3 sing 3 n y C5 C6 6P3 doub 4 n y C2 C1 6P3 doub 5 n y C6 C1 6P3 sing 6 n y C1 C12 6P3 sing 7 n n C12 N13 6P3 doub 8 n y C12 C17 6P3 sing 9 n y N13 C14 6P3 sing 10 n y C17 C16 6P3 doub 11 n y C14 C15 6P3 doub 12 n y C16 C15 6P3 sing 13 n y C15 C21 6P3 sing 14 n n C21 O22 6P3 doub 15 n n C21 O23 6P3 sing 16 n n C2 H1 6P3 sing 17 n n C3 H2 6P3 sing 18 n n C4 H3 6P3 sing 19 n n C5 H4 6P3 sing 20 n n C6 H5 6P3 sing 21 n n C14 H6 6P3 sing 22 n n C16 H7 6P3 sing 23 n n C17 H8 6P3 sing 24 n n O23 H9 6P3 sing 25 n n # _atom_sites.entry_id 5RVU _atom_sites.fract_transf_matrix[1][1] 0.007193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001688 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6P3 A 1 201 201 6P3 LIG . C 3 HOH A 1 301 201 HOH HOH . C 3 HOH A 2 302 206 HOH HOH . C 3 HOH A 3 303 183 HOH HOH . C 3 HOH A 4 304 210 HOH HOH . C 3 HOH A 5 305 167 HOH HOH . C 3 HOH A 6 306 159 HOH HOH . C 3 HOH A 7 307 220 HOH HOH . C 3 HOH A 8 308 41 HOH HOH . C 3 HOH A 9 309 197 HOH HOH . C 3 HOH A 10 310 129 HOH HOH . C 3 HOH A 11 311 49 HOH HOH . C 3 HOH A 12 312 108 HOH HOH . C 3 HOH A 13 313 198 HOH HOH . C 3 HOH A 14 314 177 HOH HOH . C 3 HOH A 15 315 152 HOH HOH . C 3 HOH A 16 316 174 HOH HOH . C 3 HOH A 17 317 194 HOH HOH . C 3 HOH A 18 318 199 HOH HOH . C 3 HOH A 19 319 122 HOH HOH . C 3 HOH A 20 320 18 HOH HOH . C 3 HOH A 21 321 219 HOH HOH . C 3 HOH A 22 322 30 HOH HOH . C 3 HOH A 23 323 87 HOH HOH . C 3 HOH A 24 324 66 HOH HOH . C 3 HOH A 25 325 124 HOH HOH . C 3 HOH A 26 326 142 HOH HOH . C 3 HOH A 27 327 98 HOH HOH . C 3 HOH A 28 328 128 HOH HOH . C 3 HOH A 29 329 186 HOH HOH . C 3 HOH A 30 330 111 HOH HOH . C 3 HOH A 31 331 6 HOH HOH . C 3 HOH A 32 332 54 HOH HOH . C 3 HOH A 33 333 229 HOH HOH . C 3 HOH A 34 334 11 HOH HOH . C 3 HOH A 35 335 95 HOH HOH . C 3 HOH A 36 336 96 HOH HOH . C 3 HOH A 37 337 22 HOH HOH . C 3 HOH A 38 338 193 HOH HOH . C 3 HOH A 39 339 169 HOH HOH . C 3 HOH A 40 340 47 HOH HOH . C 3 HOH A 41 341 150 HOH HOH . C 3 HOH A 42 342 252 HOH HOH . C 3 HOH A 43 343 148 HOH HOH . C 3 HOH A 44 344 7 HOH HOH . C 3 HOH A 45 345 72 HOH HOH . C 3 HOH A 46 346 189 HOH HOH . C 3 HOH A 47 347 83 HOH HOH . C 3 HOH A 48 348 39 HOH HOH . C 3 HOH A 49 349 33 HOH HOH . C 3 HOH A 50 350 21 HOH HOH . C 3 HOH A 51 351 91 HOH HOH . C 3 HOH A 52 352 31 HOH HOH . C 3 HOH A 53 353 23 HOH HOH . C 3 HOH A 54 354 1 HOH HOH . C 3 HOH A 55 355 5 HOH HOH . C 3 HOH A 56 356 85 HOH HOH . C 3 HOH A 57 357 28 HOH HOH . C 3 HOH A 58 358 15 HOH HOH . C 3 HOH A 59 359 53 HOH HOH . C 3 HOH A 60 360 239 HOH HOH . C 3 HOH A 61 361 3 HOH HOH . C 3 HOH A 62 362 57 HOH HOH . C 3 HOH A 63 363 59 HOH HOH . C 3 HOH A 64 364 218 HOH HOH . C 3 HOH A 65 365 40 HOH HOH . C 3 HOH A 66 366 127 HOH HOH . C 3 HOH A 67 367 140 HOH HOH . C 3 HOH A 68 368 224 HOH HOH . C 3 HOH A 69 369 170 HOH HOH . C 3 HOH A 70 370 158 HOH HOH . C 3 HOH A 71 371 35 HOH HOH . C 3 HOH A 72 372 153 HOH HOH . C 3 HOH A 73 373 16 HOH HOH . C 3 HOH A 74 374 120 HOH HOH . C 3 HOH A 75 375 131 HOH HOH . C 3 HOH A 76 376 74 HOH HOH . C 3 HOH A 77 377 226 HOH HOH . C 3 HOH A 78 378 176 HOH HOH . C 3 HOH A 79 379 8 HOH HOH . C 3 HOH A 80 380 37 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 213 HOH HOH . C 3 HOH A 83 383 114 HOH HOH . C 3 HOH A 84 384 156 HOH HOH . C 3 HOH A 85 385 161 HOH HOH . C 3 HOH A 86 386 38 HOH HOH . C 3 HOH A 87 387 65 HOH HOH . C 3 HOH A 88 388 181 HOH HOH . C 3 HOH A 89 389 26 HOH HOH . C 3 HOH A 90 390 9 HOH HOH . C 3 HOH A 91 391 82 HOH HOH . C 3 HOH A 92 392 137 HOH HOH . C 3 HOH A 93 393 205 HOH HOH . C 3 HOH A 94 394 68 HOH HOH . C 3 HOH A 95 395 212 HOH HOH . C 3 HOH A 96 396 188 HOH HOH . C 3 HOH A 97 397 36 HOH HOH . C 3 HOH A 98 398 77 HOH HOH . C 3 HOH A 99 399 52 HOH HOH . C 3 HOH A 100 400 119 HOH HOH . C 3 HOH A 101 401 14 HOH HOH . C 3 HOH A 102 402 157 HOH HOH . C 3 HOH A 103 403 73 HOH HOH . C 3 HOH A 104 404 29 HOH HOH . C 3 HOH A 105 405 78 HOH HOH . C 3 HOH A 106 406 195 HOH HOH . C 3 HOH A 107 407 250 HOH HOH . C 3 HOH A 108 408 27 HOH HOH . C 3 HOH A 109 409 190 HOH HOH . C 3 HOH A 110 410 60 HOH HOH . C 3 HOH A 111 411 86 HOH HOH . C 3 HOH A 112 412 105 HOH HOH . C 3 HOH A 113 413 200 HOH HOH . C 3 HOH A 114 414 13 HOH HOH . C 3 HOH A 115 415 93 HOH HOH . C 3 HOH A 116 416 227 HOH HOH . C 3 HOH A 117 417 106 HOH HOH . C 3 HOH A 118 418 107 HOH HOH . C 3 HOH A 119 419 48 HOH HOH . C 3 HOH A 120 420 56 HOH HOH . C 3 HOH A 121 421 217 HOH HOH . C 3 HOH A 122 422 184 HOH HOH . C 3 HOH A 123 423 4 HOH HOH . C 3 HOH A 124 424 76 HOH HOH . C 3 HOH A 125 425 171 HOH HOH . C 3 HOH A 126 426 55 HOH HOH . C 3 HOH A 127 427 166 HOH HOH . C 3 HOH A 128 428 139 HOH HOH . C 3 HOH A 129 429 110 HOH HOH . C 3 HOH A 130 430 64 HOH HOH . C 3 HOH A 131 431 75 HOH HOH . C 3 HOH A 132 432 88 HOH HOH . C 3 HOH A 133 433 34 HOH HOH . C 3 HOH A 134 434 90 HOH HOH . C 3 HOH A 135 435 80 HOH HOH . C 3 HOH A 136 436 215 HOH HOH . C 3 HOH A 137 437 146 HOH HOH . C 3 HOH A 138 438 62 HOH HOH . C 3 HOH A 139 439 238 HOH HOH . C 3 HOH A 140 440 19 HOH HOH . C 3 HOH A 141 441 234 HOH HOH . C 3 HOH A 142 442 134 HOH HOH . C 3 HOH A 143 443 243 HOH HOH . C 3 HOH A 144 444 145 HOH HOH . C 3 HOH A 145 445 12 HOH HOH . C 3 HOH A 146 446 101 HOH HOH . C 3 HOH A 147 447 61 HOH HOH . C 3 HOH A 148 448 130 HOH HOH . C 3 HOH A 149 449 24 HOH HOH . C 3 HOH A 150 450 84 HOH HOH . C 3 HOH A 151 451 10 HOH HOH . C 3 HOH A 152 452 67 HOH HOH . C 3 HOH A 153 453 25 HOH HOH . C 3 HOH A 154 454 92 HOH HOH . C 3 HOH A 155 455 71 HOH HOH . C 3 HOH A 156 456 58 HOH HOH . C 3 HOH A 157 457 43 HOH HOH . C 3 HOH A 158 458 180 HOH HOH . C 3 HOH A 159 459 102 HOH HOH . C 3 HOH A 160 460 103 HOH HOH . C 3 HOH A 161 461 50 HOH HOH . C 3 HOH A 162 462 99 HOH HOH . C 3 HOH A 163 463 118 HOH HOH . C 3 HOH A 164 464 51 HOH HOH . C 3 HOH A 165 465 112 HOH HOH . C 3 HOH A 166 466 255 HOH HOH . C 3 HOH A 167 467 125 HOH HOH . C 3 HOH A 168 468 240 HOH HOH . C 3 HOH A 169 469 208 HOH HOH . C 3 HOH A 170 470 126 HOH HOH . C 3 HOH A 171 471 144 HOH HOH . C 3 HOH A 172 472 20 HOH HOH . C 3 HOH A 173 473 109 HOH HOH . C 3 HOH A 174 474 2 HOH HOH . C 3 HOH A 175 475 151 HOH HOH . C 3 HOH A 176 476 196 HOH HOH . C 3 HOH A 177 477 225 HOH HOH . C 3 HOH A 178 478 236 HOH HOH . C 3 HOH A 179 479 185 HOH HOH . C 3 HOH A 180 480 147 HOH HOH . C 3 HOH A 181 481 178 HOH HOH . C 3 HOH A 182 482 45 HOH HOH . C 3 HOH A 183 483 248 HOH HOH . C 3 HOH A 184 484 214 HOH HOH . C 3 HOH A 185 485 123 HOH HOH . C 3 HOH A 186 486 192 HOH HOH . C 3 HOH A 187 487 191 HOH HOH . C 3 HOH A 188 488 231 HOH HOH . C 3 HOH A 189 489 222 HOH HOH . C 3 HOH A 190 490 17 HOH HOH . C 3 HOH A 191 491 89 HOH HOH . C 3 HOH A 192 492 141 HOH HOH . C 3 HOH A 193 493 46 HOH HOH . C 3 HOH A 194 494 254 HOH HOH . C 3 HOH A 195 495 237 HOH HOH . C 3 HOH A 196 496 42 HOH HOH . C 3 HOH A 197 497 253 HOH HOH . C 3 HOH A 198 498 164 HOH HOH . C 3 HOH A 199 499 172 HOH HOH . C 3 HOH A 200 500 100 HOH HOH . C 3 HOH A 201 501 44 HOH HOH . C 3 HOH A 202 502 154 HOH HOH . C 3 HOH A 203 503 168 HOH HOH . C 3 HOH A 204 504 182 HOH HOH . C 3 HOH A 205 505 235 HOH HOH . C 3 HOH A 206 506 115 HOH HOH . C 3 HOH A 207 507 179 HOH HOH . C 3 HOH A 208 508 104 HOH HOH . C 3 HOH A 209 509 202 HOH HOH . C 3 HOH A 210 510 143 HOH HOH . C 3 HOH A 211 511 149 HOH HOH . C 3 HOH A 212 512 246 HOH HOH . C 3 HOH A 213 513 155 HOH HOH . C 3 HOH A 214 514 230 HOH HOH . C 3 HOH A 215 515 187 HOH HOH . C 3 HOH A 216 516 244 HOH HOH . C 3 HOH A 217 517 32 HOH HOH . C 3 HOH A 218 518 79 HOH HOH . C 3 HOH A 219 519 221 HOH HOH . C 3 HOH A 220 520 204 HOH HOH . C 3 HOH A 221 521 249 HOH HOH . C 3 HOH A 222 522 228 HOH HOH . C 3 HOH A 223 523 162 HOH HOH . C 3 HOH A 224 524 173 HOH HOH . C 3 HOH A 225 525 251 HOH HOH . C 3 HOH A 226 526 163 HOH HOH . C 3 HOH A 227 527 97 HOH HOH . C 3 HOH A 228 528 133 HOH HOH . C 3 HOH A 229 529 203 HOH HOH . C 3 HOH A 230 530 63 HOH HOH . C 3 HOH A 231 531 69 HOH HOH . C 3 HOH A 232 532 242 HOH HOH . C 3 HOH A 233 533 136 HOH HOH . C 3 HOH A 234 534 94 HOH HOH . C 3 HOH A 235 535 117 HOH HOH . C 3 HOH A 236 536 132 HOH HOH . C 3 HOH A 237 537 165 HOH HOH . C 3 HOH A 238 538 211 HOH HOH . C 3 HOH A 239 539 116 HOH HOH . C 3 HOH A 240 540 247 HOH HOH . C 3 HOH A 241 541 70 HOH HOH . C 3 HOH A 242 542 223 HOH HOH . C 3 HOH A 243 543 216 HOH HOH . C 3 HOH A 244 544 113 HOH HOH . C 3 HOH A 245 545 121 HOH HOH . C 3 HOH A 246 546 245 HOH HOH . C 3 HOH A 247 547 241 HOH HOH . C 3 HOH A 248 548 135 HOH HOH . C 3 HOH A 249 549 138 HOH HOH . C 3 HOH A 250 550 175 HOH HOH . C 3 HOH A 251 551 232 HOH HOH . C 3 HOH A 252 552 209 HOH HOH . C 3 HOH A 253 553 207 HOH HOH . C 3 HOH A 254 554 233 HOH HOH . C 3 HOH A 255 555 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6P3 . . . B 2 9.967 5.761 19.589 0.79 31.25 ? C1 6P3 201 A 1 HETATM 2 C C2 6P3 . . . B 2 9.026 6.617 19.064 0.79 32.15 ? C2 6P3 201 A 1 HETATM 3 C C3 6P3 . . . B 2 8.793 7.841 19.669 0.79 27.77 ? C3 6P3 201 A 1 HETATM 4 C C4 6P3 . . . B 2 9.505 8.245 20.786 0.79 29.59 ? C4 6P3 201 A 1 HETATM 5 C C5 6P3 . . . B 2 10.466 7.41 21.294 0.79 32.5 ? C5 6P3 201 A 1 HETATM 6 C C6 6P3 . . . B 2 10.698 6.19 20.699 0.79 31.86 ? C6 6P3 201 A 1 HETATM 7 C C12 6P3 . . . B 2 10.273 4.404 18.942 0.79 26.77 ? C12 6P3 201 A 1 HETATM 8 N N13 6P3 . . . B 2 10.222 4.248 17.63 0.79 26.71 ? N13 6P3 201 A 1 HETATM 9 C C14 6P3 . . . B 2 10.506 3.109 17.024 0.79 25.15 ? C14 6P3 201 A 1 HETATM 10 C C15 6P3 . . . B 2 10.846 1.989 17.778 0.79 24.08 ? C15 6P3 201 A 1 HETATM 11 C C16 6P3 . . . B 2 10.914 2.1 19.149 0.79 24.98 ? C16 6P3 201 A 1 HETATM 12 C C17 6P3 . . . B 2 10.613 3.316 19.717 0.79 26.68 ? C17 6P3 201 A 1 HETATM 13 C C21 6P3 . . . B 2 11.212 0.656 17.118 0.79 23.6 ? C21 6P3 201 A 1 HETATM 14 O O22 6P3 . . . B 2 11.484 0.607 15.888 0.79 22.97 -1 O22 6P3 201 A 1 HETATM 15 O O23 6P3 . . . B 2 11.347 -0.39 17.799 0.79 26.14 ? O23 6P3 201 A 1 HETATM 16 H H1 6P3 . . . B 2 8.528 6.363 18.321 0.79 38.61 ? H1 6P3 201 A 1 HETATM 17 H H2 6P3 . . . B 2 8.142 8.404 19.317 0.79 33.35 ? H2 6P3 201 A 1 HETATM 18 H H3 6P3 . . . B 2 9.342 9.073 21.177 0.79 35.53 ? H3 6P3 201 A 1 HETATM 19 H H4 6P3 . . . B 2 10.954 7.663 22.044 0.79 39.03 ? H4 6P3 201 A 1 HETATM 20 H H5 6P3 . . . B 2 11.346 5.628 21.058 0.79 38.26 ? H5 6P3 201 A 1 HETATM 21 H H6 6P3 . . . B 2 10.465 3.052 16.097 0.79 30.21 ? H6 6P3 201 A 1 HETATM 22 H H7 6P3 . . . B 2 11.152 1.372 19.676 0.79 30.01 ? H7 6P3 201 A 1 HETATM 23 H H8 6P3 . . . B 2 10.655 3.41 20.641 0.79 32.05 ? H8 6P3 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #