data_5RYQ
#
_model_server_result.job_id            VjuTrlGl5MKVhGZqQq0JyQ 
_model_server_result.datetime_utc      '2024-11-22 22:28:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ryq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    5RYQ 
#
_exptl.entry_id    5RYQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RYQ 
_cell.length_a            38.4 
_cell.length_b            77.26 
_cell.length_c            99.73 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RYQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     5RYQ 
_atom_sites.fract_transf_matrix[1][1]    0.026042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NVD A 1 401 401 NVD LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 3 DMS A 1 404 3 DMS DMS . 
F 4 EDO A 1 405 1 EDO EDO . 
G 4 EDO A 1 406 2 EDO EDO . 
H 4 EDO A 1 407 3 EDO EDO . 
I 4 EDO A 1 408 4 EDO EDO . 
J 4 EDO A 1 409 5 EDO EDO . 
K 4 EDO A 1 410 6 EDO EDO . 
L 5 HOH A 1 501 113 HOH HOH . 
L 5 HOH A 2 502 63 HOH HOH . 
L 5 HOH A 3 503 79 HOH HOH . 
L 5 HOH A 4 504 96 HOH HOH . 
L 5 HOH A 5 505 74 HOH HOH . 
L 5 HOH A 6 506 148 HOH HOH . 
L 5 HOH A 7 507 26 HOH HOH . 
L 5 HOH A 8 508 127 HOH HOH . 
L 5 HOH A 9 509 129 HOH HOH . 
L 5 HOH A 10 510 133 HOH HOH . 
L 5 HOH A 11 511 54 HOH HOH . 
L 5 HOH A 12 512 105 HOH HOH . 
L 5 HOH A 13 513 75 HOH HOH . 
L 5 HOH A 14 514 50 HOH HOH . 
L 5 HOH A 15 515 109 HOH HOH . 
L 5 HOH A 16 516 97 HOH HOH . 
L 5 HOH A 17 517 9 HOH HOH . 
L 5 HOH A 18 518 59 HOH HOH . 
L 5 HOH A 19 519 1 HOH HOH . 
L 5 HOH A 20 520 151 HOH HOH . 
L 5 HOH A 21 521 116 HOH HOH . 
L 5 HOH A 22 522 5 HOH HOH . 
L 5 HOH A 23 523 152 HOH HOH . 
L 5 HOH A 24 524 124 HOH HOH . 
L 5 HOH A 25 525 42 HOH HOH . 
L 5 HOH A 26 526 67 HOH HOH . 
L 5 HOH A 27 527 28 HOH HOH . 
L 5 HOH A 28 528 146 HOH HOH . 
L 5 HOH A 29 529 10 HOH HOH . 
L 5 HOH A 30 530 111 HOH HOH . 
L 5 HOH A 31 531 51 HOH HOH . 
L 5 HOH A 32 532 76 HOH HOH . 
L 5 HOH A 33 533 36 HOH HOH . 
L 5 HOH A 34 534 82 HOH HOH . 
L 5 HOH A 35 535 92 HOH HOH . 
L 5 HOH A 36 536 136 HOH HOH . 
L 5 HOH A 37 537 150 HOH HOH . 
L 5 HOH A 38 538 57 HOH HOH . 
L 5 HOH A 39 539 106 HOH HOH . 
L 5 HOH A 40 540 98 HOH HOH . 
L 5 HOH A 41 541 61 HOH HOH . 
L 5 HOH A 42 542 31 HOH HOH . 
L 5 HOH A 43 543 138 HOH HOH . 
L 5 HOH A 44 544 108 HOH HOH . 
L 5 HOH A 45 545 88 HOH HOH . 
L 5 HOH A 46 546 86 HOH HOH . 
L 5 HOH A 47 547 24 HOH HOH . 
L 5 HOH A 48 548 32 HOH HOH . 
L 5 HOH A 49 549 45 HOH HOH . 
L 5 HOH A 50 550 18 HOH HOH . 
L 5 HOH A 51 551 130 HOH HOH . 
L 5 HOH A 52 552 4 HOH HOH . 
L 5 HOH A 53 553 101 HOH HOH . 
L 5 HOH A 54 554 87 HOH HOH . 
L 5 HOH A 55 555 3 HOH HOH . 
L 5 HOH A 56 556 115 HOH HOH . 
L 5 HOH A 57 557 69 HOH HOH . 
L 5 HOH A 58 558 40 HOH HOH . 
L 5 HOH A 59 559 58 HOH HOH . 
L 5 HOH A 60 560 104 HOH HOH . 
L 5 HOH A 61 561 22 HOH HOH . 
L 5 HOH A 62 562 143 HOH HOH . 
L 5 HOH A 63 563 66 HOH HOH . 
L 5 HOH A 64 564 43 HOH HOH . 
L 5 HOH A 65 565 99 HOH HOH . 
L 5 HOH A 66 566 17 HOH HOH . 
L 5 HOH A 67 567 53 HOH HOH . 
L 5 HOH A 68 568 68 HOH HOH . 
L 5 HOH A 69 569 29 HOH HOH . 
L 5 HOH A 70 570 123 HOH HOH . 
L 5 HOH A 71 571 21 HOH HOH . 
L 5 HOH A 72 572 153 HOH HOH . 
L 5 HOH A 73 573 60 HOH HOH . 
L 5 HOH A 74 574 8 HOH HOH . 
L 5 HOH A 75 575 128 HOH HOH . 
L 5 HOH A 76 576 30 HOH HOH . 
L 5 HOH A 77 577 11 HOH HOH . 
L 5 HOH A 78 578 119 HOH HOH . 
L 5 HOH A 79 579 84 HOH HOH . 
L 5 HOH A 80 580 16 HOH HOH . 
L 5 HOH A 81 581 95 HOH HOH . 
L 5 HOH A 82 582 89 HOH HOH . 
L 5 HOH A 83 583 120 HOH HOH . 
L 5 HOH A 84 584 141 HOH HOH . 
L 5 HOH A 85 585 90 HOH HOH . 
L 5 HOH A 86 586 20 HOH HOH . 
L 5 HOH A 87 587 114 HOH HOH . 
L 5 HOH A 88 588 100 HOH HOH . 
L 5 HOH A 89 589 23 HOH HOH . 
L 5 HOH A 90 590 139 HOH HOH . 
L 5 HOH A 91 591 14 HOH HOH . 
L 5 HOH A 92 592 142 HOH HOH . 
L 5 HOH A 93 593 94 HOH HOH . 
L 5 HOH A 94 594 56 HOH HOH . 
L 5 HOH A 95 595 47 HOH HOH . 
L 5 HOH A 96 596 35 HOH HOH . 
L 5 HOH A 97 597 46 HOH HOH . 
L 5 HOH A 98 598 117 HOH HOH . 
L 5 HOH A 99 599 107 HOH HOH . 
L 5 HOH A 100 600 19 HOH HOH . 
L 5 HOH A 101 601 55 HOH HOH . 
L 5 HOH A 102 602 144 HOH HOH . 
L 5 HOH A 103 603 118 HOH HOH . 
L 5 HOH A 104 604 110 HOH HOH . 
L 5 HOH A 105 605 52 HOH HOH . 
L 5 HOH A 106 606 37 HOH HOH . 
L 5 HOH A 107 607 12 HOH HOH . 
L 5 HOH A 108 608 125 HOH HOH . 
L 5 HOH A 109 609 7 HOH HOH . 
L 5 HOH A 110 610 38 HOH HOH . 
L 5 HOH A 111 611 71 HOH HOH . 
L 5 HOH A 112 612 91 HOH HOH . 
L 5 HOH A 113 613 41 HOH HOH . 
L 5 HOH A 114 614 39 HOH HOH . 
L 5 HOH A 115 615 70 HOH HOH . 
L 5 HOH A 116 616 13 HOH HOH . 
L 5 HOH A 117 617 112 HOH HOH . 
L 5 HOH A 118 618 34 HOH HOH . 
L 5 HOH A 119 619 6 HOH HOH . 
L 5 HOH A 120 620 77 HOH HOH . 
L 5 HOH A 121 621 149 HOH HOH . 
L 5 HOH A 122 622 2 HOH HOH . 
L 5 HOH A 123 623 25 HOH HOH . 
L 5 HOH A 124 624 44 HOH HOH . 
L 5 HOH A 125 625 73 HOH HOH . 
L 5 HOH A 126 626 27 HOH HOH . 
L 5 HOH A 127 627 135 HOH HOH . 
L 5 HOH A 128 628 65 HOH HOH . 
L 5 HOH A 129 629 145 HOH HOH . 
L 5 HOH A 130 630 132 HOH HOH . 
L 5 HOH A 131 631 122 HOH HOH . 
L 5 HOH A 132 632 147 HOH HOH . 
L 5 HOH A 133 633 78 HOH HOH . 
L 5 HOH A 134 634 121 HOH HOH . 
L 5 HOH A 135 635 103 HOH HOH . 
L 5 HOH A 136 636 83 HOH HOH . 
L 5 HOH A 137 637 72 HOH HOH . 
L 5 HOH A 138 638 85 HOH HOH . 
L 5 HOH A 139 639 137 HOH HOH . 
L 5 HOH A 140 640 64 HOH HOH . 
L 5 HOH A 141 641 134 HOH HOH . 
L 5 HOH A 142 642 80 HOH HOH . 
L 5 HOH A 143 643 93 HOH HOH . 
L 5 HOH A 144 644 62 HOH HOH . 
L 5 HOH A 145 645 33 HOH HOH . 
L 5 HOH A 146 646 126 HOH HOH . 
L 5 HOH A 147 647 48 HOH HOH . 
L 5 HOH A 148 648 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 4 16.53 5.27 0.505 1 52.48 ? C1 EDO 409 A 1 
HETATM 2 O O1 EDO . . . J 4 17.831 5.84 0.4 1 50.92 ? O1 EDO 409 A 1 
HETATM 3 C C2 EDO . . . J 4 15.677 5.536 -0.693 1 49.39 ? C2 EDO 409 A 1 
HETATM 4 O O2 EDO . . . J 4 14.482 6.237 -0.397 1 48.03 ? O2 EDO 409 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#