data_5RYS
#
_model_server_result.job_id            SjKU0-TImHusywc3qu0upg 
_model_server_result.datetime_utc      '2024-11-23 02:52:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rys 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5RYS 
#
_exptl.entry_id    5RYS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.702 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-(4-chlorophenyl)-N'-[(2R)-1-hydroxybutan-2-yl]urea" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RYS 
_cell.length_a            38.69 
_cell.length_b            77.63 
_cell.length_c            99.61 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RYS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H15 Cl N2 O2' 
_chem_comp.formula_weight    242.702 
_chem_comp.id                H0D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-(4-chlorophenyl)-N'-[(2R)-1-hydroxybutan-2-yl]urea" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 H0D doub 147 n y 
C8 C9 H0D sing 148 n y 
C7 C6 H0D sing 149 n y 
CL1 C9 H0D sing 150 n n 
C9 C10 H0D doub 151 n y 
C6 N2 H0D sing 152 n n 
C6 C11 H0D doub 153 n y 
N2 C5 H0D sing 154 n n 
O1 C4 H0D sing 155 n n 
C5 N1 H0D sing 156 n n 
C5 O2 H0D doub 157 n n 
N1 C3 H0D sing 158 n n 
C10 C11 H0D sing 159 n y 
C4 C3 H0D sing 160 n n 
C3 C2 H0D sing 161 n n 
C2 C1 H0D sing 162 n n 
N1 H1 H0D sing 163 n n 
C4 H2 H0D sing 164 n n 
C4 H3 H0D sing 165 n n 
C7 H4 H0D sing 166 n n 
C8 H5 H0D sing 167 n n 
C10 H6 H0D sing 168 n n 
C1 H7 H0D sing 169 n n 
C1 H8 H0D sing 170 n n 
C1 H9 H0D sing 171 n n 
C2 H10 H0D sing 172 n n 
C2 H11 H0D sing 173 n n 
C3 H12 H0D sing 174 n n 
O1 H13 H0D sing 175 n n 
N2 H14 H0D sing 176 n n 
C11 H15 H0D sing 177 n n 
#
_atom_sites.entry_id                     5RYS 
_atom_sites.fract_transf_matrix[1][1]    0.025846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012882 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 H0D A 1 401 401 H0D LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 4 EDO A 1 404 1 EDO EDO . 
F 4 EDO A 1 405 2 EDO EDO . 
G 4 EDO A 1 406 3 EDO EDO . 
H 4 EDO A 1 407 4 EDO EDO . 
I 4 EDO A 1 408 5 EDO EDO . 
J 4 EDO A 1 409 6 EDO EDO . 
K 5 HOH A 1 501 148 HOH HOH . 
K 5 HOH A 2 502 127 HOH HOH . 
K 5 HOH A 3 503 113 HOH HOH . 
K 5 HOH A 4 504 124 HOH HOH . 
K 5 HOH A 5 505 129 HOH HOH . 
K 5 HOH A 6 506 133 HOH HOH . 
K 5 HOH A 7 507 26 HOH HOH . 
K 5 HOH A 8 508 63 HOH HOH . 
K 5 HOH A 9 509 96 HOH HOH . 
K 5 HOH A 10 510 95 HOH HOH . 
K 5 HOH A 11 511 138 HOH HOH . 
K 5 HOH A 12 512 43 HOH HOH . 
K 5 HOH A 13 513 50 HOH HOH . 
K 5 HOH A 14 514 74 HOH HOH . 
K 5 HOH A 15 515 97 HOH HOH . 
K 5 HOH A 16 516 5 HOH HOH . 
K 5 HOH A 17 517 76 HOH HOH . 
K 5 HOH A 18 518 28 HOH HOH . 
K 5 HOH A 19 519 1 HOH HOH . 
K 5 HOH A 20 520 153 HOH HOH . 
K 5 HOH A 21 521 59 HOH HOH . 
K 5 HOH A 22 522 10 HOH HOH . 
K 5 HOH A 23 523 51 HOH HOH . 
K 5 HOH A 24 524 60 HOH HOH . 
K 5 HOH A 25 525 82 HOH HOH . 
K 5 HOH A 26 526 115 HOH HOH . 
K 5 HOH A 27 527 22 HOH HOH . 
K 5 HOH A 28 528 123 HOH HOH . 
K 5 HOH A 29 529 54 HOH HOH . 
K 5 HOH A 30 530 61 HOH HOH . 
K 5 HOH A 31 531 87 HOH HOH . 
K 5 HOH A 32 532 118 HOH HOH . 
K 5 HOH A 33 533 120 HOH HOH . 
K 5 HOH A 34 534 9 HOH HOH . 
K 5 HOH A 35 535 42 HOH HOH . 
K 5 HOH A 36 536 109 HOH HOH . 
K 5 HOH A 37 537 11 HOH HOH . 
K 5 HOH A 38 538 18 HOH HOH . 
K 5 HOH A 39 539 143 HOH HOH . 
K 5 HOH A 40 540 45 HOH HOH . 
K 5 HOH A 41 541 105 HOH HOH . 
K 5 HOH A 42 542 47 HOH HOH . 
K 5 HOH A 43 543 116 HOH HOH . 
K 5 HOH A 44 544 36 HOH HOH . 
K 5 HOH A 45 545 108 HOH HOH . 
K 5 HOH A 46 546 4 HOH HOH . 
K 5 HOH A 47 547 106 HOH HOH . 
K 5 HOH A 48 548 52 HOH HOH . 
K 5 HOH A 49 549 86 HOH HOH . 
K 5 HOH A 50 550 135 HOH HOH . 
K 5 HOH A 51 551 67 HOH HOH . 
K 5 HOH A 52 552 29 HOH HOH . 
K 5 HOH A 53 553 58 HOH HOH . 
K 5 HOH A 54 554 99 HOH HOH . 
K 5 HOH A 55 555 100 HOH HOH . 
K 5 HOH A 56 556 92 HOH HOH . 
K 5 HOH A 57 557 32 HOH HOH . 
K 5 HOH A 58 558 31 HOH HOH . 
K 5 HOH A 59 559 90 HOH HOH . 
K 5 HOH A 60 560 101 HOH HOH . 
K 5 HOH A 61 561 8 HOH HOH . 
K 5 HOH A 62 562 3 HOH HOH . 
K 5 HOH A 63 563 53 HOH HOH . 
K 5 HOH A 64 564 83 HOH HOH . 
K 5 HOH A 65 565 119 HOH HOH . 
K 5 HOH A 66 566 57 HOH HOH . 
K 5 HOH A 67 567 81 HOH HOH . 
K 5 HOH A 68 568 88 HOH HOH . 
K 5 HOH A 69 569 89 HOH HOH . 
K 5 HOH A 70 570 139 HOH HOH . 
K 5 HOH A 71 571 75 HOH HOH . 
K 5 HOH A 72 572 150 HOH HOH . 
K 5 HOH A 73 573 146 HOH HOH . 
K 5 HOH A 74 574 69 HOH HOH . 
K 5 HOH A 75 575 40 HOH HOH . 
K 5 HOH A 76 576 110 HOH HOH . 
K 5 HOH A 77 577 142 HOH HOH . 
K 5 HOH A 78 578 145 HOH HOH . 
K 5 HOH A 79 579 111 HOH HOH . 
K 5 HOH A 80 580 16 HOH HOH . 
K 5 HOH A 81 581 21 HOH HOH . 
K 5 HOH A 82 582 102 HOH HOH . 
K 5 HOH A 83 583 17 HOH HOH . 
K 5 HOH A 84 584 84 HOH HOH . 
K 5 HOH A 85 585 66 HOH HOH . 
K 5 HOH A 86 586 68 HOH HOH . 
K 5 HOH A 87 587 98 HOH HOH . 
K 5 HOH A 88 588 35 HOH HOH . 
K 5 HOH A 89 589 79 HOH HOH . 
K 5 HOH A 90 590 136 HOH HOH . 
K 5 HOH A 91 591 14 HOH HOH . 
K 5 HOH A 92 592 117 HOH HOH . 
K 5 HOH A 93 593 15 HOH HOH . 
K 5 HOH A 94 594 128 HOH HOH . 
K 5 HOH A 95 595 24 HOH HOH . 
K 5 HOH A 96 596 114 HOH HOH . 
K 5 HOH A 97 597 94 HOH HOH . 
K 5 HOH A 98 598 56 HOH HOH . 
K 5 HOH A 99 599 55 HOH HOH . 
K 5 HOH A 100 600 6 HOH HOH . 
K 5 HOH A 101 601 144 HOH HOH . 
K 5 HOH A 102 602 19 HOH HOH . 
K 5 HOH A 103 603 37 HOH HOH . 
K 5 HOH A 104 604 38 HOH HOH . 
K 5 HOH A 105 605 12 HOH HOH . 
K 5 HOH A 106 606 41 HOH HOH . 
K 5 HOH A 107 607 141 HOH HOH . 
K 5 HOH A 108 608 71 HOH HOH . 
K 5 HOH A 109 609 152 HOH HOH . 
K 5 HOH A 110 610 46 HOH HOH . 
K 5 HOH A 111 611 34 HOH HOH . 
K 5 HOH A 112 612 107 HOH HOH . 
K 5 HOH A 113 613 30 HOH HOH . 
K 5 HOH A 114 614 7 HOH HOH . 
K 5 HOH A 115 615 70 HOH HOH . 
K 5 HOH A 116 616 73 HOH HOH . 
K 5 HOH A 117 617 2 HOH HOH . 
K 5 HOH A 118 618 25 HOH HOH . 
K 5 HOH A 119 619 91 HOH HOH . 
K 5 HOH A 120 620 44 HOH HOH . 
K 5 HOH A 121 621 27 HOH HOH . 
K 5 HOH A 122 622 121 HOH HOH . 
K 5 HOH A 123 623 78 HOH HOH . 
K 5 HOH A 124 624 130 HOH HOH . 
K 5 HOH A 125 625 65 HOH HOH . 
K 5 HOH A 126 626 13 HOH HOH . 
K 5 HOH A 127 627 149 HOH HOH . 
K 5 HOH A 128 628 39 HOH HOH . 
K 5 HOH A 129 629 77 HOH HOH . 
K 5 HOH A 130 630 125 HOH HOH . 
K 5 HOH A 131 631 147 HOH HOH . 
K 5 HOH A 132 632 151 HOH HOH . 
K 5 HOH A 133 633 122 HOH HOH . 
K 5 HOH A 134 634 112 HOH HOH . 
K 5 HOH A 135 635 72 HOH HOH . 
K 5 HOH A 136 636 132 HOH HOH . 
K 5 HOH A 137 637 137 HOH HOH . 
K 5 HOH A 138 638 85 HOH HOH . 
K 5 HOH A 139 639 103 HOH HOH . 
K 5 HOH A 140 640 64 HOH HOH . 
K 5 HOH A 141 641 134 HOH HOH . 
K 5 HOH A 142 642 80 HOH HOH . 
K 5 HOH A 143 643 62 HOH HOH . 
K 5 HOH A 144 644 140 HOH HOH . 
K 5 HOH A 145 645 33 HOH HOH . 
K 5 HOH A 146 646 48 HOH HOH . 
K 5 HOH A 147 647 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H0D . . . B 2 10.316 -2.618 -35.9 0.42 38.95 ? N1 H0D 401 A 1 
HETATM 2 C C4 H0D . . . B 2 12.722 -2.148 -35.936 0.42 39.11 ? C4 H0D 401 A 1 
HETATM 3 C C5 H0D . . . B 2 9.198 -3.466 -35.768 0.42 37.7 ? C5 H0D 401 A 1 
HETATM 4 C C6 H0D . . . B 2 6.741 -3.613 -36.211 0.42 32.64 ? C6 H0D 401 A 1 
HETATM 5 C C7 H0D . . . B 2 6.393 -4.561 -35.25 0.42 32.07 ? C7 H0D 401 A 1 
HETATM 6 C C8 H0D . . . B 2 5.214 -5.296 -35.376 0.42 32.03 ? C8 H0D 401 A 1 
HETATM 7 C C10 H0D . . . B 2 4.685 -4.06 -37.366 0.42 31.36 ? C10 H0D 401 A 1 
HETATM 8 C C1 H0D . . . B 2 12.678 -2.069 -32.928 0.42 39.8 ? C1 H0D 401 A 1 
HETATM 9 C C2 H0D . . . B 2 11.385 -2.116 -33.734 0.42 39.45 ? C2 H0D 401 A 1 
HETATM 10 C C3 H0D . . . B 2 11.556 -2.786 -35.117 0.42 38.76 ? C3 H0D 401 A 1 
HETATM 11 O O1 H0D . . . B 2 12.259 -0.893 -36.361 0.42 39.08 ? O1 H0D 401 A 1 
HETATM 12 O O2 H0D . . . B 2 9.279 -4.58 -35.28 0.42 37.59 ? O2 H0D 401 A 1 
HETATM 13 N N2 H0D . . . B 2 7.977 -2.937 -36.236 0.42 34.66 ? N2 H0D 401 A 1 
HETATM 14 C C9 H0D . . . B 2 4.391 -5.041 -36.456 0.42 30.94 ? C9 H0D 401 A 1 
HETATM 15 C C11 H0D . . . B 2 5.859 -3.342 -37.264 0.42 31.84 ? C11 H0D 401 A 1 
HETATM 16 CL CL1 H0D . . . B 2 3 -6.043 -36.753 0.42 31.35 ? CL1 H0D 401 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#