data_5RYT # _model_server_result.job_id yih5A8E0UKlSavoXSAAFMA _model_server_result.datetime_utc '2024-11-05 00:34:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ryt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5RYT # _exptl.entry_id 5RYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 211.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2,6-difluorophenyl)(pyrrolidin-1-yl)methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RYT _cell.length_a 38.54 _cell.length_b 77.39 _cell.length_c 99.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C11 H11 F2 N O' _chem_comp.formula_weight 211.208 _chem_comp.id NX7 _chem_comp.mon_nstd_flag . _chem_comp.name (2,6-difluorophenyl)(pyrrolidin-1-yl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 NX7 sing 255 n n C9 C10 NX7 sing 256 n n C8 C7 NX7 sing 257 n n C10 N NX7 sing 258 n n C7 N NX7 sing 259 n n N C6 NX7 sing 260 n n F C NX7 sing 261 n n C6 C5 NX7 sing 262 n n C6 O NX7 doub 263 n n C5 C NX7 doub 264 n y C5 C4 NX7 sing 265 n y C C1 NX7 sing 266 n y F1 C4 NX7 sing 267 n n C4 C3 NX7 doub 268 n y C1 C2 NX7 doub 269 n y C3 C2 NX7 sing 270 n y C7 H1 NX7 sing 271 n n C7 H2 NX7 sing 272 n n C8 H3 NX7 sing 273 n n C8 H4 NX7 sing 274 n n C10 H5 NX7 sing 275 n n C10 H6 NX7 sing 276 n n C1 H7 NX7 sing 277 n n C2 H8 NX7 sing 278 n n C3 H9 NX7 sing 279 n n C9 H10 NX7 sing 280 n n C9 H11 NX7 sing 281 n n # _atom_sites.entry_id 5RYT _atom_sites.fract_transf_matrix[1][1] 0.025947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NX7 A 1 401 401 NX7 LIG . C 2 NX7 A 1 402 501 NX7 LIG . D 3 DMS A 1 403 1 DMS DMS . E 3 DMS A 1 404 2 DMS DMS . F 3 DMS A 1 405 3 DMS DMS . G 4 EDO A 1 406 1 EDO EDO . H 4 EDO A 1 407 2 EDO EDO . I 4 EDO A 1 408 3 EDO EDO . J 4 EDO A 1 409 4 EDO EDO . K 4 EDO A 1 410 5 EDO EDO . L 4 EDO A 1 411 6 EDO EDO . M 5 HOH A 1 501 123 HOH HOH . M 5 HOH A 2 502 105 HOH HOH . M 5 HOH A 3 503 96 HOH HOH . M 5 HOH A 4 504 124 HOH HOH . M 5 HOH A 5 505 145 HOH HOH . M 5 HOH A 6 506 59 HOH HOH . M 5 HOH A 7 507 129 HOH HOH . M 5 HOH A 8 508 26 HOH HOH . M 5 HOH A 9 509 113 HOH HOH . M 5 HOH A 10 510 111 HOH HOH . M 5 HOH A 11 511 97 HOH HOH . M 5 HOH A 12 512 148 HOH HOH . M 5 HOH A 13 513 67 HOH HOH . M 5 HOH A 14 514 79 HOH HOH . M 5 HOH A 15 515 104 HOH HOH . M 5 HOH A 16 516 108 HOH HOH . M 5 HOH A 17 517 133 HOH HOH . M 5 HOH A 18 518 75 HOH HOH . M 5 HOH A 19 519 42 HOH HOH . M 5 HOH A 20 520 10 HOH HOH . M 5 HOH A 21 521 28 HOH HOH . M 5 HOH A 22 522 115 HOH HOH . M 5 HOH A 23 523 43 HOH HOH . M 5 HOH A 24 524 35 HOH HOH . M 5 HOH A 25 525 109 HOH HOH . M 5 HOH A 26 526 63 HOH HOH . M 5 HOH A 27 527 101 HOH HOH . M 5 HOH A 28 528 50 HOH HOH . M 5 HOH A 29 529 5 HOH HOH . M 5 HOH A 30 530 1 HOH HOH . M 5 HOH A 31 531 98 HOH HOH . M 5 HOH A 32 532 92 HOH HOH . M 5 HOH A 33 533 106 HOH HOH . M 5 HOH A 34 534 136 HOH HOH . M 5 HOH A 35 535 150 HOH HOH . M 5 HOH A 36 536 81 HOH HOH . M 5 HOH A 37 537 4 HOH HOH . M 5 HOH A 38 538 51 HOH HOH . M 5 HOH A 39 539 120 HOH HOH . M 5 HOH A 40 540 86 HOH HOH . M 5 HOH A 41 541 58 HOH HOH . M 5 HOH A 42 542 36 HOH HOH . M 5 HOH A 43 543 143 HOH HOH . M 5 HOH A 44 544 11 HOH HOH . M 5 HOH A 45 545 76 HOH HOH . M 5 HOH A 46 546 57 HOH HOH . M 5 HOH A 47 547 53 HOH HOH . M 5 HOH A 48 548 9 HOH HOH . M 5 HOH A 49 549 78 HOH HOH . M 5 HOH A 50 550 60 HOH HOH . M 5 HOH A 51 551 138 HOH HOH . M 5 HOH A 52 552 45 HOH HOH . M 5 HOH A 53 553 29 HOH HOH . M 5 HOH A 54 554 31 HOH HOH . M 5 HOH A 55 555 69 HOH HOH . M 5 HOH A 56 556 40 HOH HOH . M 5 HOH A 57 557 152 HOH HOH . M 5 HOH A 58 558 61 HOH HOH . M 5 HOH A 59 559 18 HOH HOH . M 5 HOH A 60 560 20 HOH HOH . M 5 HOH A 61 561 52 HOH HOH . M 5 HOH A 62 562 107 HOH HOH . M 5 HOH A 63 563 47 HOH HOH . M 5 HOH A 64 564 88 HOH HOH . M 5 HOH A 65 565 17 HOH HOH . M 5 HOH A 66 566 114 HOH HOH . M 5 HOH A 67 567 68 HOH HOH . M 5 HOH A 68 568 82 HOH HOH . M 5 HOH A 69 569 16 HOH HOH . M 5 HOH A 70 570 22 HOH HOH . M 5 HOH A 71 571 24 HOH HOH . M 5 HOH A 72 572 54 HOH HOH . M 5 HOH A 73 573 21 HOH HOH . M 5 HOH A 74 574 102 HOH HOH . M 5 HOH A 75 575 142 HOH HOH . M 5 HOH A 76 576 3 HOH HOH . M 5 HOH A 77 577 100 HOH HOH . M 5 HOH A 78 578 99 HOH HOH . M 5 HOH A 79 579 91 HOH HOH . M 5 HOH A 80 580 8 HOH HOH . M 5 HOH A 81 581 118 HOH HOH . M 5 HOH A 82 582 37 HOH HOH . M 5 HOH A 83 583 117 HOH HOH . M 5 HOH A 84 584 15 HOH HOH . M 5 HOH A 85 585 30 HOH HOH . M 5 HOH A 86 586 14 HOH HOH . M 5 HOH A 87 587 125 HOH HOH . M 5 HOH A 88 588 84 HOH HOH . M 5 HOH A 89 589 32 HOH HOH . M 5 HOH A 90 590 110 HOH HOH . M 5 HOH A 91 591 46 HOH HOH . M 5 HOH A 92 592 71 HOH HOH . M 5 HOH A 93 593 38 HOH HOH . M 5 HOH A 94 594 56 HOH HOH . M 5 HOH A 95 595 154 HOH HOH . M 5 HOH A 96 596 66 HOH HOH . M 5 HOH A 97 597 87 HOH HOH . M 5 HOH A 98 598 141 HOH HOH . M 5 HOH A 99 599 146 HOH HOH . M 5 HOH A 100 600 119 HOH HOH . M 5 HOH A 101 601 89 HOH HOH . M 5 HOH A 102 602 90 HOH HOH . M 5 HOH A 103 603 144 HOH HOH . M 5 HOH A 104 604 139 HOH HOH . M 5 HOH A 105 605 94 HOH HOH . M 5 HOH A 106 606 73 HOH HOH . M 5 HOH A 107 607 6 HOH HOH . M 5 HOH A 108 608 130 HOH HOH . M 5 HOH A 109 609 128 HOH HOH . M 5 HOH A 110 610 44 HOH HOH . M 5 HOH A 111 611 74 HOH HOH . M 5 HOH A 112 612 12 HOH HOH . M 5 HOH A 113 613 116 HOH HOH . M 5 HOH A 114 614 95 HOH HOH . M 5 HOH A 115 615 77 HOH HOH . M 5 HOH A 116 616 23 HOH HOH . M 5 HOH A 117 617 70 HOH HOH . M 5 HOH A 118 618 34 HOH HOH . M 5 HOH A 119 619 112 HOH HOH . M 5 HOH A 120 620 65 HOH HOH . M 5 HOH A 121 621 13 HOH HOH . M 5 HOH A 122 622 27 HOH HOH . M 5 HOH A 123 623 39 HOH HOH . M 5 HOH A 124 624 147 HOH HOH . M 5 HOH A 125 625 19 HOH HOH . M 5 HOH A 126 626 149 HOH HOH . M 5 HOH A 127 627 7 HOH HOH . M 5 HOH A 128 628 41 HOH HOH . M 5 HOH A 129 629 122 HOH HOH . M 5 HOH A 130 630 25 HOH HOH . M 5 HOH A 131 631 2 HOH HOH . M 5 HOH A 132 632 135 HOH HOH . M 5 HOH A 133 633 151 HOH HOH . M 5 HOH A 134 634 83 HOH HOH . M 5 HOH A 135 635 121 HOH HOH . M 5 HOH A 136 636 72 HOH HOH . M 5 HOH A 137 637 134 HOH HOH . M 5 HOH A 138 638 137 HOH HOH . M 5 HOH A 139 639 132 HOH HOH . M 5 HOH A 140 640 85 HOH HOH . M 5 HOH A 141 641 93 HOH HOH . M 5 HOH A 142 642 103 HOH HOH . M 5 HOH A 143 643 64 HOH HOH . M 5 HOH A 144 644 80 HOH HOH . M 5 HOH A 145 645 62 HOH HOH . M 5 HOH A 146 646 140 HOH HOH . M 5 HOH A 147 647 33 HOH HOH . M 5 HOH A 148 648 155 HOH HOH . M 5 HOH A 149 649 126 HOH HOH . M 5 HOH A 150 650 48 HOH HOH . M 5 HOH A 151 651 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 NX7 . . . B 2 -4.598 10.812 -17.939 0.58 50.93 ? C4 NX7 401 A 1 HETATM 2 C C5 NX7 . . . B 2 -5.729 10.016 -18.125 0.58 52.44 ? C5 NX7 401 A 1 HETATM 3 C C6 NX7 . . . B 2 -6.613 10.335 -19.282 0.58 53.76 ? C6 NX7 401 A 1 HETATM 4 C C7 NX7 . . . B 2 -6.03 8.102 -20.34 0.58 54.31 ? C7 NX7 401 A 1 HETATM 5 C C8 NX7 . . . B 2 -6.275 7.558 -21.753 0.58 55.48 ? C8 NX7 401 A 1 HETATM 6 C C10 NX7 . . . B 2 -7.611 9.619 -21.45 0.58 55.15 ? C10 NX7 401 A 1 HETATM 7 N N NX7 . . . B 2 -6.732 9.396 -20.288 0.58 54.72 ? N NX7 401 A 1 HETATM 8 C C NX7 . . . B 2 -5.948 8.944 -17.214 0.58 50.09 ? C NX7 401 A 1 HETATM 9 O O NX7 . . . B 2 -7.157 11.424 -19.359 0.58 54.81 ? O NX7 401 A 1 HETATM 10 C C1 NX7 . . . B 2 -5.044 8.683 -16.172 0.58 50.35 ? C1 NX7 401 A 1 HETATM 11 C C2 NX7 . . . B 2 -3.915 9.496 -16.037 0.58 50.55 ? C2 NX7 401 A 1 HETATM 12 C C3 NX7 . . . B 2 -3.682 10.56 -16.905 0.58 50.36 ? C3 NX7 401 A 1 HETATM 13 C C9 NX7 . . . B 2 -7.438 8.38 -22.347 0.58 56.77 ? C9 NX7 401 A 1 HETATM 14 F F NX7 . . . B 2 -7.001 8.159 -17.33 0.58 47.35 ? F NX7 401 A 1 HETATM 15 F F1 NX7 . . . B 2 -4.416 11.85 -18.755 0.58 48.82 ? F1 NX7 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #