data_5RYY # _model_server_result.job_id advjIbQOgnEsqe6hbt1AYw _model_server_result.datetime_utc '2024-11-22 22:37:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ryy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5RYY # _exptl.entry_id 5RYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3-phenylprop-2-yn-1-yl)piperidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RYY _cell.length_a 38.6 _cell.length_b 77.67 _cell.length_c 99.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H17 N' _chem_comp.formula_weight 199.291 _chem_comp.id WGV _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3-phenylprop-2-yn-1-yl)piperidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C WGV sing 394 n n C2 C1 WGV trip 395 n n C3 C2 WGV sing 396 n n C3 C4 WGV sing 397 n y C4 C5 WGV doub 398 n y C5 C6 WGV sing 399 n y C6 C7 WGV doub 400 n y C7 C8 WGV sing 401 n y C8 C3 WGV doub 402 n y C N WGV sing 403 n n N C9 WGV sing 404 n n C9 C10 WGV sing 405 n n C10 C11 WGV sing 406 n n C11 C12 WGV sing 407 n n C12 C13 WGV sing 408 n n N C13 WGV sing 409 n n C4 H2 WGV sing 410 n n C5 H3 WGV sing 411 n n C6 H4 WGV sing 412 n n C7 H5 WGV sing 413 n n C8 H6 WGV sing 414 n n C10 H10 WGV sing 415 n n C10 H9 WGV sing 416 n n C13 H15 WGV sing 417 n n C13 H16 WGV sing 418 n n C H1 WGV sing 419 n n C H WGV sing 420 n n C11 H11 WGV sing 421 n n C11 H12 WGV sing 422 n n C12 H14 WGV sing 423 n n C12 H13 WGV sing 424 n n C9 H8 WGV sing 425 n n C9 H7 WGV sing 426 n n # _atom_sites.entry_id 5RYY _atom_sites.fract_transf_matrix[1][1] 0.025907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WGV A 1 401 401 WGV LIG . C 3 DMS A 1 402 1 DMS DMS . D 4 EDO A 1 403 1 EDO EDO . E 4 EDO A 1 404 2 EDO EDO . F 4 EDO A 1 405 3 EDO EDO . G 4 EDO A 1 406 4 EDO EDO . H 4 EDO A 1 407 5 EDO EDO . I 4 EDO A 1 408 6 EDO EDO . J 5 HOH A 1 501 127 HOH HOH . J 5 HOH A 2 502 123 HOH HOH . J 5 HOH A 3 503 105 HOH HOH . J 5 HOH A 4 504 79 HOH HOH . J 5 HOH A 5 505 104 HOH HOH . J 5 HOH A 6 506 96 HOH HOH . J 5 HOH A 7 507 148 HOH HOH . J 5 HOH A 8 508 138 HOH HOH . J 5 HOH A 9 509 97 HOH HOH . J 5 HOH A 10 510 113 HOH HOH . J 5 HOH A 11 511 129 HOH HOH . J 5 HOH A 12 512 108 HOH HOH . J 5 HOH A 13 513 124 HOH HOH . J 5 HOH A 14 514 26 HOH HOH . J 5 HOH A 15 515 133 HOH HOH . J 5 HOH A 16 516 9 HOH HOH . J 5 HOH A 17 517 35 HOH HOH . J 5 HOH A 18 518 116 HOH HOH . J 5 HOH A 19 519 51 HOH HOH . J 5 HOH A 20 520 146 HOH HOH . J 5 HOH A 21 521 109 HOH HOH . J 5 HOH A 22 522 95 HOH HOH . J 5 HOH A 23 523 63 HOH HOH . J 5 HOH A 24 524 153 HOH HOH . J 5 HOH A 25 525 28 HOH HOH . J 5 HOH A 26 526 67 HOH HOH . J 5 HOH A 27 527 10 HOH HOH . J 5 HOH A 28 528 101 HOH HOH . J 5 HOH A 29 529 42 HOH HOH . J 5 HOH A 30 530 59 HOH HOH . J 5 HOH A 31 531 50 HOH HOH . J 5 HOH A 32 532 81 HOH HOH . J 5 HOH A 33 533 11 HOH HOH . J 5 HOH A 34 534 90 HOH HOH . J 5 HOH A 35 535 5 HOH HOH . J 5 HOH A 36 536 86 HOH HOH . J 5 HOH A 37 537 47 HOH HOH . J 5 HOH A 38 538 45 HOH HOH . J 5 HOH A 39 539 4 HOH HOH . J 5 HOH A 40 540 117 HOH HOH . J 5 HOH A 41 541 111 HOH HOH . J 5 HOH A 42 542 76 HOH HOH . J 5 HOH A 43 543 62 HOH HOH . J 5 HOH A 44 544 57 HOH HOH . J 5 HOH A 45 545 98 HOH HOH . J 5 HOH A 46 546 36 HOH HOH . J 5 HOH A 47 547 61 HOH HOH . J 5 HOH A 48 548 15 HOH HOH . J 5 HOH A 49 549 75 HOH HOH . J 5 HOH A 50 550 82 HOH HOH . J 5 HOH A 51 551 52 HOH HOH . J 5 HOH A 52 552 92 HOH HOH . J 5 HOH A 53 553 150 HOH HOH . J 5 HOH A 54 554 29 HOH HOH . J 5 HOH A 55 555 60 HOH HOH . J 5 HOH A 56 556 142 HOH HOH . J 5 HOH A 57 557 1 HOH HOH . J 5 HOH A 58 558 18 HOH HOH . J 5 HOH A 59 559 43 HOH HOH . J 5 HOH A 60 560 106 HOH HOH . J 5 HOH A 61 561 21 HOH HOH . J 5 HOH A 62 562 87 HOH HOH . J 5 HOH A 63 563 8 HOH HOH . J 5 HOH A 64 564 100 HOH HOH . J 5 HOH A 65 565 58 HOH HOH . J 5 HOH A 66 566 22 HOH HOH . J 5 HOH A 67 567 74 HOH HOH . J 5 HOH A 68 568 136 HOH HOH . J 5 HOH A 69 569 31 HOH HOH . J 5 HOH A 70 570 53 HOH HOH . J 5 HOH A 71 571 68 HOH HOH . J 5 HOH A 72 572 16 HOH HOH . J 5 HOH A 73 573 141 HOH HOH . J 5 HOH A 74 574 44 HOH HOH . J 5 HOH A 75 575 69 HOH HOH . J 5 HOH A 76 576 24 HOH HOH . J 5 HOH A 77 577 139 HOH HOH . J 5 HOH A 78 578 17 HOH HOH . J 5 HOH A 79 579 84 HOH HOH . J 5 HOH A 80 580 99 HOH HOH . J 5 HOH A 81 581 88 HOH HOH . J 5 HOH A 82 582 40 HOH HOH . J 5 HOH A 83 583 118 HOH HOH . J 5 HOH A 84 584 56 HOH HOH . J 5 HOH A 85 585 112 HOH HOH . J 5 HOH A 86 586 38 HOH HOH . J 5 HOH A 87 587 66 HOH HOH . J 5 HOH A 88 588 94 HOH HOH . J 5 HOH A 89 589 3 HOH HOH . J 5 HOH A 90 590 144 HOH HOH . J 5 HOH A 91 591 102 HOH HOH . J 5 HOH A 92 592 46 HOH HOH . J 5 HOH A 93 593 120 HOH HOH . J 5 HOH A 94 594 23 HOH HOH . J 5 HOH A 95 595 143 HOH HOH . J 5 HOH A 96 596 32 HOH HOH . J 5 HOH A 97 597 114 HOH HOH . J 5 HOH A 98 598 37 HOH HOH . J 5 HOH A 99 599 20 HOH HOH . J 5 HOH A 100 600 107 HOH HOH . J 5 HOH A 101 601 89 HOH HOH . J 5 HOH A 102 602 14 HOH HOH . J 5 HOH A 103 603 30 HOH HOH . J 5 HOH A 104 604 70 HOH HOH . J 5 HOH A 105 605 110 HOH HOH . J 5 HOH A 106 606 19 HOH HOH . J 5 HOH A 107 607 6 HOH HOH . J 5 HOH A 108 608 55 HOH HOH . J 5 HOH A 109 609 130 HOH HOH . J 5 HOH A 110 610 119 HOH HOH . J 5 HOH A 111 611 125 HOH HOH . J 5 HOH A 112 612 12 HOH HOH . J 5 HOH A 113 613 25 HOH HOH . J 5 HOH A 114 614 41 HOH HOH . J 5 HOH A 115 615 73 HOH HOH . J 5 HOH A 116 616 7 HOH HOH . J 5 HOH A 117 617 122 HOH HOH . J 5 HOH A 118 618 145 HOH HOH . J 5 HOH A 119 619 39 HOH HOH . J 5 HOH A 120 620 77 HOH HOH . J 5 HOH A 121 621 34 HOH HOH . J 5 HOH A 122 622 149 HOH HOH . J 5 HOH A 123 623 128 HOH HOH . J 5 HOH A 124 624 65 HOH HOH . J 5 HOH A 125 625 147 HOH HOH . J 5 HOH A 126 626 78 HOH HOH . J 5 HOH A 127 627 13 HOH HOH . J 5 HOH A 128 628 71 HOH HOH . J 5 HOH A 129 629 91 HOH HOH . J 5 HOH A 130 630 27 HOH HOH . J 5 HOH A 131 631 83 HOH HOH . J 5 HOH A 132 632 151 HOH HOH . J 5 HOH A 133 633 2 HOH HOH . J 5 HOH A 134 634 121 HOH HOH . J 5 HOH A 135 635 135 HOH HOH . J 5 HOH A 136 636 132 HOH HOH . J 5 HOH A 137 637 154 HOH HOH . J 5 HOH A 138 638 72 HOH HOH . J 5 HOH A 139 639 137 HOH HOH . J 5 HOH A 140 640 103 HOH HOH . J 5 HOH A 141 641 152 HOH HOH . J 5 HOH A 142 642 85 HOH HOH . J 5 HOH A 143 643 64 HOH HOH . J 5 HOH A 144 644 134 HOH HOH . J 5 HOH A 145 645 80 HOH HOH . J 5 HOH A 146 646 93 HOH HOH . J 5 HOH A 147 647 33 HOH HOH . J 5 HOH A 148 648 48 HOH HOH . J 5 HOH A 149 649 140 HOH HOH . J 5 HOH A 150 650 155 HOH HOH . J 5 HOH A 151 651 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WGV . . . B 2 -8.595 -8.241 -13.669 0.58 20.72 ? C4 WGV 401 A 1 HETATM 2 C C5 WGV . . . B 2 -9.636 -8.129 -12.748 0.58 21.25 ? C5 WGV 401 A 1 HETATM 3 C C6 WGV . . . B 2 -10.89 -8.67 -13.038 0.58 20.7 ? C6 WGV 401 A 1 HETATM 4 C C7 WGV . . . B 2 -11.105 -9.329 -14.233 0.58 20.59 ? C7 WGV 401 A 1 HETATM 5 C C8 WGV . . . B 2 -10.082 -9.46 -15.15 0.58 21.11 ? C8 WGV 401 A 1 HETATM 6 C C10 WGV . . . B 2 -8.487 -8.967 -20.62 0.58 26.83 ? C10 WGV 401 A 1 HETATM 7 C C13 WGV . . . B 2 -5.603 -9.24 -20.249 0.58 24.81 ? C13 WGV 401 A 1 HETATM 8 N N WGV . . . B 2 -6.608 -9.27 -19.121 0.58 25.07 ? N WGV 401 A 1 HETATM 9 C C WGV . . . B 2 -5.988 -9.035 -17.783 0.58 24.43 ? C WGV 401 A 1 HETATM 10 C C1 WGV . . . B 2 -6.964 -9.02 -16.684 0.58 24.15 ? C1 WGV 401 A 1 HETATM 11 C C11 WGV . . . B 2 -7.509 -8.872 -21.807 0.58 26.23 ? C11 WGV 401 A 1 HETATM 12 C C12 WGV . . . B 2 -6.29 -9.698 -21.532 0.58 24.32 ? C12 WGV 401 A 1 HETATM 13 C C2 WGV . . . B 2 -7.8 -8.972 -15.852 0.58 23.08 ? C2 WGV 401 A 1 HETATM 14 C C3 WGV . . . B 2 -8.822 -8.903 -14.875 0.58 21.59 ? C3 WGV 401 A 1 HETATM 15 C C9 WGV . . . B 2 -7.775 -8.351 -19.431 0.58 25.9 ? C9 WGV 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #