data_5RYZ
#
_model_server_result.job_id            ieiZQC7L3zg6dKa_Cz1c3A 
_model_server_result.datetime_utc      '2024-11-13 08:23:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ryz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5RYZ 
#
_exptl.entry_id    5RYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RYZ 
_cell.length_a            38.53 
_cell.length_b            77.55 
_cell.length_c            99.52 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     5RYZ 
_atom_sites.fract_transf_matrix[1][1]    0.025954 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010048 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NVY A 1 401 401 NVY LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 4 EDO A 1 403 1 EDO EDO . 
E 4 EDO A 1 404 2 EDO EDO . 
F 4 EDO A 1 405 3 EDO EDO . 
G 4 EDO A 1 406 4 EDO EDO . 
H 4 EDO A 1 407 5 EDO EDO . 
I 4 EDO A 1 408 6 EDO EDO . 
J 5 HOH A 1 501 113 HOH HOH . 
J 5 HOH A 2 502 158 HOH HOH . 
J 5 HOH A 3 503 127 HOH HOH . 
J 5 HOH A 4 504 138 HOH HOH . 
J 5 HOH A 5 505 90 HOH HOH . 
J 5 HOH A 6 506 133 HOH HOH . 
J 5 HOH A 7 507 96 HOH HOH . 
J 5 HOH A 8 508 63 HOH HOH . 
J 5 HOH A 9 509 10 HOH HOH . 
J 5 HOH A 10 510 108 HOH HOH . 
J 5 HOH A 11 511 124 HOH HOH . 
J 5 HOH A 12 512 22 HOH HOH . 
J 5 HOH A 13 513 148 HOH HOH . 
J 5 HOH A 14 514 1 HOH HOH . 
J 5 HOH A 15 515 45 HOH HOH . 
J 5 HOH A 16 516 5 HOH HOH . 
J 5 HOH A 17 517 9 HOH HOH . 
J 5 HOH A 18 518 59 HOH HOH . 
J 5 HOH A 19 519 42 HOH HOH . 
J 5 HOH A 20 520 105 HOH HOH . 
J 5 HOH A 21 521 109 HOH HOH . 
J 5 HOH A 22 522 129 HOH HOH . 
J 5 HOH A 23 523 74 HOH HOH . 
J 5 HOH A 24 524 154 HOH HOH . 
J 5 HOH A 25 525 146 HOH HOH . 
J 5 HOH A 26 526 95 HOH HOH . 
J 5 HOH A 27 527 67 HOH HOH . 
J 5 HOH A 28 528 66 HOH HOH . 
J 5 HOH A 29 529 50 HOH HOH . 
J 5 HOH A 30 530 143 HOH HOH . 
J 5 HOH A 31 531 97 HOH HOH . 
J 5 HOH A 32 532 102 HOH HOH . 
J 5 HOH A 33 533 119 HOH HOH . 
J 5 HOH A 34 534 36 HOH HOH . 
J 5 HOH A 35 535 106 HOH HOH . 
J 5 HOH A 36 536 58 HOH HOH . 
J 5 HOH A 37 537 120 HOH HOH . 
J 5 HOH A 38 538 28 HOH HOH . 
J 5 HOH A 39 539 26 HOH HOH . 
J 5 HOH A 40 540 61 HOH HOH . 
J 5 HOH A 41 541 76 HOH HOH . 
J 5 HOH A 42 542 88 HOH HOH . 
J 5 HOH A 43 543 52 HOH HOH . 
J 5 HOH A 44 544 3 HOH HOH . 
J 5 HOH A 45 545 84 HOH HOH . 
J 5 HOH A 46 546 86 HOH HOH . 
J 5 HOH A 47 547 57 HOH HOH . 
J 5 HOH A 48 548 87 HOH HOH . 
J 5 HOH A 49 549 75 HOH HOH . 
J 5 HOH A 50 550 100 HOH HOH . 
J 5 HOH A 51 551 11 HOH HOH . 
J 5 HOH A 52 552 32 HOH HOH . 
J 5 HOH A 53 553 4 HOH HOH . 
J 5 HOH A 54 554 18 HOH HOH . 
J 5 HOH A 55 555 116 HOH HOH . 
J 5 HOH A 56 556 83 HOH HOH . 
J 5 HOH A 57 557 17 HOH HOH . 
J 5 HOH A 58 558 8 HOH HOH . 
J 5 HOH A 59 559 16 HOH HOH . 
J 5 HOH A 60 560 101 HOH HOH . 
J 5 HOH A 61 561 150 HOH HOH . 
J 5 HOH A 62 562 130 HOH HOH . 
J 5 HOH A 63 563 128 HOH HOH . 
J 5 HOH A 64 564 99 HOH HOH . 
J 5 HOH A 65 565 62 HOH HOH . 
J 5 HOH A 66 566 20 HOH HOH . 
J 5 HOH A 67 567 24 HOH HOH . 
J 5 HOH A 68 568 123 HOH HOH . 
J 5 HOH A 69 569 92 HOH HOH . 
J 5 HOH A 70 570 157 HOH HOH . 
J 5 HOH A 71 571 55 HOH HOH . 
J 5 HOH A 72 572 81 HOH HOH . 
J 5 HOH A 73 573 21 HOH HOH . 
J 5 HOH A 74 574 40 HOH HOH . 
J 5 HOH A 75 575 142 HOH HOH . 
J 5 HOH A 76 576 79 HOH HOH . 
J 5 HOH A 77 577 104 HOH HOH . 
J 5 HOH A 78 578 98 HOH HOH . 
J 5 HOH A 79 579 118 HOH HOH . 
J 5 HOH A 80 580 141 HOH HOH . 
J 5 HOH A 81 581 68 HOH HOH . 
J 5 HOH A 82 582 31 HOH HOH . 
J 5 HOH A 83 583 89 HOH HOH . 
J 5 HOH A 84 584 151 HOH HOH . 
J 5 HOH A 85 585 71 HOH HOH . 
J 5 HOH A 86 586 53 HOH HOH . 
J 5 HOH A 87 587 19 HOH HOH . 
J 5 HOH A 88 588 114 HOH HOH . 
J 5 HOH A 89 589 107 HOH HOH . 
J 5 HOH A 90 590 43 HOH HOH . 
J 5 HOH A 91 591 136 HOH HOH . 
J 5 HOH A 92 592 69 HOH HOH . 
J 5 HOH A 93 593 47 HOH HOH . 
J 5 HOH A 94 594 60 HOH HOH . 
J 5 HOH A 95 595 29 HOH HOH . 
J 5 HOH A 96 596 15 HOH HOH . 
J 5 HOH A 97 597 30 HOH HOH . 
J 5 HOH A 98 598 51 HOH HOH . 
J 5 HOH A 99 599 35 HOH HOH . 
J 5 HOH A 100 600 121 HOH HOH . 
J 5 HOH A 101 601 94 HOH HOH . 
J 5 HOH A 102 602 34 HOH HOH . 
J 5 HOH A 103 603 56 HOH HOH . 
J 5 HOH A 104 604 14 HOH HOH . 
J 5 HOH A 105 605 23 HOH HOH . 
J 5 HOH A 106 606 110 HOH HOH . 
J 5 HOH A 107 607 38 HOH HOH . 
J 5 HOH A 108 608 46 HOH HOH . 
J 5 HOH A 109 609 91 HOH HOH . 
J 5 HOH A 110 610 41 HOH HOH . 
J 5 HOH A 111 611 111 HOH HOH . 
J 5 HOH A 112 612 12 HOH HOH . 
J 5 HOH A 113 613 70 HOH HOH . 
J 5 HOH A 114 614 27 HOH HOH . 
J 5 HOH A 115 615 25 HOH HOH . 
J 5 HOH A 116 616 6 HOH HOH . 
J 5 HOH A 117 617 37 HOH HOH . 
J 5 HOH A 118 618 135 HOH HOH . 
J 5 HOH A 119 619 73 HOH HOH . 
J 5 HOH A 120 620 153 HOH HOH . 
J 5 HOH A 121 621 77 HOH HOH . 
J 5 HOH A 122 622 2 HOH HOH . 
J 5 HOH A 123 623 139 HOH HOH . 
J 5 HOH A 124 624 65 HOH HOH . 
J 5 HOH A 125 625 78 HOH HOH . 
J 5 HOH A 126 626 117 HOH HOH . 
J 5 HOH A 127 627 44 HOH HOH . 
J 5 HOH A 128 628 7 HOH HOH . 
J 5 HOH A 129 629 149 HOH HOH . 
J 5 HOH A 130 630 112 HOH HOH . 
J 5 HOH A 131 631 13 HOH HOH . 
J 5 HOH A 132 632 122 HOH HOH . 
J 5 HOH A 133 633 145 HOH HOH . 
J 5 HOH A 134 634 161 HOH HOH . 
J 5 HOH A 135 635 162 HOH HOH . 
J 5 HOH A 136 636 125 HOH HOH . 
J 5 HOH A 137 637 147 HOH HOH . 
J 5 HOH A 138 638 39 HOH HOH . 
J 5 HOH A 139 639 152 HOH HOH . 
J 5 HOH A 140 640 132 HOH HOH . 
J 5 HOH A 141 641 156 HOH HOH . 
J 5 HOH A 142 642 159 HOH HOH . 
J 5 HOH A 143 643 160 HOH HOH . 
J 5 HOH A 144 644 72 HOH HOH . 
J 5 HOH A 145 645 155 HOH HOH . 
J 5 HOH A 146 646 85 HOH HOH . 
J 5 HOH A 147 647 137 HOH HOH . 
J 5 HOH A 148 648 134 HOH HOH . 
J 5 HOH A 149 649 103 HOH HOH . 
J 5 HOH A 150 650 64 HOH HOH . 
J 5 HOH A 151 651 80 HOH HOH . 
J 5 HOH A 152 652 93 HOH HOH . 
J 5 HOH A 153 653 48 HOH HOH . 
J 5 HOH A 154 654 126 HOH HOH . 
J 5 HOH A 155 655 33 HOH HOH . 
J 5 HOH A 156 656 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . C 3 13.813 0.16 -26.091 1 56.74 ? S DMS 402 A 1 
HETATM 2 O O DMS . . . C 3 12.341 -0.043 -26.391 1 51.32 ? O DMS 402 A 1 
HETATM 3 C C1 DMS . . . C 3 14.207 -1.067 -24.856 1 55.46 ? C1 DMS 402 A 1 
HETATM 4 C C2 DMS . . . C 3 14.691 -0.592 -27.445 1 55.49 ? C2 DMS 402 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#