data_5RYZ # _model_server_result.job_id uCVf9W9d3ykYPI4lp6Rg6Q _model_server_result.datetime_utc '2024-11-13 08:44:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ryz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 5RYZ # _exptl.entry_id 5RYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RYZ _cell.length_a 38.53 _cell.length_b 77.55 _cell.length_c 99.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 5RYZ _atom_sites.fract_transf_matrix[1][1] 0.025954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NVY A 1 401 401 NVY LIG . C 3 DMS A 1 402 1 DMS DMS . D 4 EDO A 1 403 1 EDO EDO . E 4 EDO A 1 404 2 EDO EDO . F 4 EDO A 1 405 3 EDO EDO . G 4 EDO A 1 406 4 EDO EDO . H 4 EDO A 1 407 5 EDO EDO . I 4 EDO A 1 408 6 EDO EDO . J 5 HOH A 1 501 113 HOH HOH . J 5 HOH A 2 502 158 HOH HOH . J 5 HOH A 3 503 127 HOH HOH . J 5 HOH A 4 504 138 HOH HOH . J 5 HOH A 5 505 90 HOH HOH . J 5 HOH A 6 506 133 HOH HOH . J 5 HOH A 7 507 96 HOH HOH . J 5 HOH A 8 508 63 HOH HOH . J 5 HOH A 9 509 10 HOH HOH . J 5 HOH A 10 510 108 HOH HOH . J 5 HOH A 11 511 124 HOH HOH . J 5 HOH A 12 512 22 HOH HOH . J 5 HOH A 13 513 148 HOH HOH . J 5 HOH A 14 514 1 HOH HOH . J 5 HOH A 15 515 45 HOH HOH . J 5 HOH A 16 516 5 HOH HOH . J 5 HOH A 17 517 9 HOH HOH . J 5 HOH A 18 518 59 HOH HOH . J 5 HOH A 19 519 42 HOH HOH . J 5 HOH A 20 520 105 HOH HOH . J 5 HOH A 21 521 109 HOH HOH . J 5 HOH A 22 522 129 HOH HOH . J 5 HOH A 23 523 74 HOH HOH . J 5 HOH A 24 524 154 HOH HOH . J 5 HOH A 25 525 146 HOH HOH . J 5 HOH A 26 526 95 HOH HOH . J 5 HOH A 27 527 67 HOH HOH . J 5 HOH A 28 528 66 HOH HOH . J 5 HOH A 29 529 50 HOH HOH . J 5 HOH A 30 530 143 HOH HOH . J 5 HOH A 31 531 97 HOH HOH . J 5 HOH A 32 532 102 HOH HOH . J 5 HOH A 33 533 119 HOH HOH . J 5 HOH A 34 534 36 HOH HOH . J 5 HOH A 35 535 106 HOH HOH . J 5 HOH A 36 536 58 HOH HOH . J 5 HOH A 37 537 120 HOH HOH . J 5 HOH A 38 538 28 HOH HOH . J 5 HOH A 39 539 26 HOH HOH . J 5 HOH A 40 540 61 HOH HOH . J 5 HOH A 41 541 76 HOH HOH . J 5 HOH A 42 542 88 HOH HOH . J 5 HOH A 43 543 52 HOH HOH . J 5 HOH A 44 544 3 HOH HOH . J 5 HOH A 45 545 84 HOH HOH . J 5 HOH A 46 546 86 HOH HOH . J 5 HOH A 47 547 57 HOH HOH . J 5 HOH A 48 548 87 HOH HOH . J 5 HOH A 49 549 75 HOH HOH . J 5 HOH A 50 550 100 HOH HOH . J 5 HOH A 51 551 11 HOH HOH . J 5 HOH A 52 552 32 HOH HOH . J 5 HOH A 53 553 4 HOH HOH . J 5 HOH A 54 554 18 HOH HOH . J 5 HOH A 55 555 116 HOH HOH . J 5 HOH A 56 556 83 HOH HOH . J 5 HOH A 57 557 17 HOH HOH . J 5 HOH A 58 558 8 HOH HOH . J 5 HOH A 59 559 16 HOH HOH . J 5 HOH A 60 560 101 HOH HOH . J 5 HOH A 61 561 150 HOH HOH . J 5 HOH A 62 562 130 HOH HOH . J 5 HOH A 63 563 128 HOH HOH . J 5 HOH A 64 564 99 HOH HOH . J 5 HOH A 65 565 62 HOH HOH . J 5 HOH A 66 566 20 HOH HOH . J 5 HOH A 67 567 24 HOH HOH . J 5 HOH A 68 568 123 HOH HOH . J 5 HOH A 69 569 92 HOH HOH . J 5 HOH A 70 570 157 HOH HOH . J 5 HOH A 71 571 55 HOH HOH . J 5 HOH A 72 572 81 HOH HOH . J 5 HOH A 73 573 21 HOH HOH . J 5 HOH A 74 574 40 HOH HOH . J 5 HOH A 75 575 142 HOH HOH . J 5 HOH A 76 576 79 HOH HOH . J 5 HOH A 77 577 104 HOH HOH . J 5 HOH A 78 578 98 HOH HOH . J 5 HOH A 79 579 118 HOH HOH . J 5 HOH A 80 580 141 HOH HOH . J 5 HOH A 81 581 68 HOH HOH . J 5 HOH A 82 582 31 HOH HOH . J 5 HOH A 83 583 89 HOH HOH . J 5 HOH A 84 584 151 HOH HOH . J 5 HOH A 85 585 71 HOH HOH . J 5 HOH A 86 586 53 HOH HOH . J 5 HOH A 87 587 19 HOH HOH . J 5 HOH A 88 588 114 HOH HOH . J 5 HOH A 89 589 107 HOH HOH . J 5 HOH A 90 590 43 HOH HOH . J 5 HOH A 91 591 136 HOH HOH . J 5 HOH A 92 592 69 HOH HOH . J 5 HOH A 93 593 47 HOH HOH . J 5 HOH A 94 594 60 HOH HOH . J 5 HOH A 95 595 29 HOH HOH . J 5 HOH A 96 596 15 HOH HOH . J 5 HOH A 97 597 30 HOH HOH . J 5 HOH A 98 598 51 HOH HOH . J 5 HOH A 99 599 35 HOH HOH . J 5 HOH A 100 600 121 HOH HOH . J 5 HOH A 101 601 94 HOH HOH . J 5 HOH A 102 602 34 HOH HOH . J 5 HOH A 103 603 56 HOH HOH . J 5 HOH A 104 604 14 HOH HOH . J 5 HOH A 105 605 23 HOH HOH . J 5 HOH A 106 606 110 HOH HOH . J 5 HOH A 107 607 38 HOH HOH . J 5 HOH A 108 608 46 HOH HOH . J 5 HOH A 109 609 91 HOH HOH . J 5 HOH A 110 610 41 HOH HOH . J 5 HOH A 111 611 111 HOH HOH . J 5 HOH A 112 612 12 HOH HOH . J 5 HOH A 113 613 70 HOH HOH . J 5 HOH A 114 614 27 HOH HOH . J 5 HOH A 115 615 25 HOH HOH . J 5 HOH A 116 616 6 HOH HOH . J 5 HOH A 117 617 37 HOH HOH . J 5 HOH A 118 618 135 HOH HOH . J 5 HOH A 119 619 73 HOH HOH . J 5 HOH A 120 620 153 HOH HOH . J 5 HOH A 121 621 77 HOH HOH . J 5 HOH A 122 622 2 HOH HOH . J 5 HOH A 123 623 139 HOH HOH . J 5 HOH A 124 624 65 HOH HOH . J 5 HOH A 125 625 78 HOH HOH . J 5 HOH A 126 626 117 HOH HOH . J 5 HOH A 127 627 44 HOH HOH . J 5 HOH A 128 628 7 HOH HOH . J 5 HOH A 129 629 149 HOH HOH . J 5 HOH A 130 630 112 HOH HOH . J 5 HOH A 131 631 13 HOH HOH . J 5 HOH A 132 632 122 HOH HOH . J 5 HOH A 133 633 145 HOH HOH . J 5 HOH A 134 634 161 HOH HOH . J 5 HOH A 135 635 162 HOH HOH . J 5 HOH A 136 636 125 HOH HOH . J 5 HOH A 137 637 147 HOH HOH . J 5 HOH A 138 638 39 HOH HOH . J 5 HOH A 139 639 152 HOH HOH . J 5 HOH A 140 640 132 HOH HOH . J 5 HOH A 141 641 156 HOH HOH . J 5 HOH A 142 642 159 HOH HOH . J 5 HOH A 143 643 160 HOH HOH . J 5 HOH A 144 644 72 HOH HOH . J 5 HOH A 145 645 155 HOH HOH . J 5 HOH A 146 646 85 HOH HOH . J 5 HOH A 147 647 137 HOH HOH . J 5 HOH A 148 648 134 HOH HOH . J 5 HOH A 149 649 103 HOH HOH . J 5 HOH A 150 650 64 HOH HOH . J 5 HOH A 151 651 80 HOH HOH . J 5 HOH A 152 652 93 HOH HOH . J 5 HOH A 153 653 48 HOH HOH . J 5 HOH A 154 654 126 HOH HOH . J 5 HOH A 155 655 33 HOH HOH . J 5 HOH A 156 656 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 16.887 5.582 0.543 1 48.44 ? C1 EDO 407 A 1 HETATM 2 O O1 EDO . . . H 4 18.216 6.038 0.225 1 46.31 ? O1 EDO 407 A 1 HETATM 3 C C2 EDO . . . H 4 15.969 5.459 -0.631 1 44.53 ? C2 EDO 407 A 1 HETATM 4 O O2 EDO . . . H 4 14.697 6.092 -0.482 1 44.8 ? O2 EDO 407 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #