data_5RZ5
#
_model_server_result.job_id            AjWQci2FYfJM77xjmtCMjQ 
_model_server_result.datetime_utc      '2025-01-10 10:05:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5RZ5 
#
_exptl.entry_id    5RZ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.276 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-({[(4-fluorophenyl)methyl]amino}methyl)benzonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RZ5 
_cell.length_a            38.39 
_cell.length_b            77.49 
_cell.length_c            99.85 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H13 F N2' 
_chem_comp.formula_weight    240.276 
_chem_comp.id                WHD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-({[(4-fluorophenyl)methyl]amino}methyl)benzonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F C WHD sing 394 n n 
C C1 WHD sing 395 n y 
C1 C2 WHD doub 396 n y 
C2 C3 WHD sing 397 n y 
C3 C4 WHD sing 398 n n 
C4 N WHD sing 399 n n 
N C5 WHD sing 400 n n 
C5 C6 WHD sing 401 n n 
C6 C7 WHD sing 402 n y 
C7 C8 WHD doub 403 n y 
C8 C9 WHD sing 404 n y 
C9 C10 WHD sing 405 n n 
C10 N1 WHD trip 406 n n 
C11 C9 WHD doub 407 n y 
C12 C11 WHD sing 408 n y 
C6 C12 WHD doub 409 n y 
C13 C3 WHD doub 410 n y 
C14 C13 WHD sing 411 n y 
C C14 WHD doub 412 n y 
C4 H3 WHD sing 413 n n 
C4 H2 WHD sing 414 n n 
C5 H6 WHD sing 415 n n 
C5 H5 WHD sing 416 n n 
C7 H7 WHD sing 417 n n 
C8 H8 WHD sing 418 n n 
C13 H11 WHD sing 419 n n 
N H4 WHD sing 420 n n 
C1 H WHD sing 421 n n 
C11 H9 WHD sing 422 n n 
C12 H10 WHD sing 423 n n 
C14 H12 WHD sing 424 n n 
C2 H1 WHD sing 425 n n 
#
_atom_sites.entry_id                     5RZ5 
_atom_sites.fract_transf_matrix[1][1]    0.026048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012905 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WHD A 1 401 401 WHD LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 4 EDO A 1 404 1 EDO EDO . 
F 4 EDO A 1 405 2 EDO EDO . 
G 4 EDO A 1 406 3 EDO EDO . 
H 4 EDO A 1 407 4 EDO EDO . 
I 4 EDO A 1 408 5 EDO EDO . 
J 4 EDO A 1 409 6 EDO EDO . 
K 5 HOH A 1 501 113 HOH HOH . 
K 5 HOH A 2 502 59 HOH HOH . 
K 5 HOH A 3 503 90 HOH HOH . 
K 5 HOH A 4 504 148 HOH HOH . 
K 5 HOH A 5 505 152 HOH HOH . 
K 5 HOH A 6 506 96 HOH HOH . 
K 5 HOH A 7 507 9 HOH HOH . 
K 5 HOH A 8 508 129 HOH HOH . 
K 5 HOH A 9 509 74 HOH HOH . 
K 5 HOH A 10 510 108 HOH HOH . 
K 5 HOH A 11 511 154 HOH HOH . 
K 5 HOH A 12 512 26 HOH HOH . 
K 5 HOH A 13 513 42 HOH HOH . 
K 5 HOH A 14 514 109 HOH HOH . 
K 5 HOH A 15 515 76 HOH HOH . 
K 5 HOH A 16 516 50 HOH HOH . 
K 5 HOH A 17 517 67 HOH HOH . 
K 5 HOH A 18 518 105 HOH HOH . 
K 5 HOH A 19 519 116 HOH HOH . 
K 5 HOH A 20 520 155 HOH HOH . 
K 5 HOH A 21 521 5 HOH HOH . 
K 5 HOH A 22 522 51 HOH HOH . 
K 5 HOH A 23 523 1 HOH HOH . 
K 5 HOH A 24 524 97 HOH HOH . 
K 5 HOH A 25 525 87 HOH HOH . 
K 5 HOH A 26 526 120 HOH HOH . 
K 5 HOH A 27 527 138 HOH HOH . 
K 5 HOH A 28 528 28 HOH HOH . 
K 5 HOH A 29 529 106 HOH HOH . 
K 5 HOH A 30 530 10 HOH HOH . 
K 5 HOH A 31 531 133 HOH HOH . 
K 5 HOH A 32 532 22 HOH HOH . 
K 5 HOH A 33 533 63 HOH HOH . 
K 5 HOH A 34 534 142 HOH HOH . 
K 5 HOH A 35 535 146 HOH HOH . 
K 5 HOH A 36 536 61 HOH HOH . 
K 5 HOH A 37 537 45 HOH HOH . 
K 5 HOH A 38 538 143 HOH HOH . 
K 5 HOH A 39 539 54 HOH HOH . 
K 5 HOH A 40 540 24 HOH HOH . 
K 5 HOH A 41 541 124 HOH HOH . 
K 5 HOH A 42 542 36 HOH HOH . 
K 5 HOH A 43 543 95 HOH HOH . 
K 5 HOH A 44 544 88 HOH HOH . 
K 5 HOH A 45 545 86 HOH HOH . 
K 5 HOH A 46 546 156 HOH HOH . 
K 5 HOH A 47 547 159 HOH HOH . 
K 5 HOH A 48 548 71 HOH HOH . 
K 5 HOH A 49 549 20 HOH HOH . 
K 5 HOH A 50 550 98 HOH HOH . 
K 5 HOH A 51 551 84 HOH HOH . 
K 5 HOH A 52 552 58 HOH HOH . 
K 5 HOH A 53 553 101 HOH HOH . 
K 5 HOH A 54 554 114 HOH HOH . 
K 5 HOH A 55 555 69 HOH HOH . 
K 5 HOH A 56 556 18 HOH HOH . 
K 5 HOH A 57 557 17 HOH HOH . 
K 5 HOH A 58 558 16 HOH HOH . 
K 5 HOH A 59 559 8 HOH HOH . 
K 5 HOH A 60 560 92 HOH HOH . 
K 5 HOH A 61 561 32 HOH HOH . 
K 5 HOH A 62 562 57 HOH HOH . 
K 5 HOH A 63 563 23 HOH HOH . 
K 5 HOH A 64 564 118 HOH HOH . 
K 5 HOH A 65 565 4 HOH HOH . 
K 5 HOH A 66 566 160 HOH HOH . 
K 5 HOH A 67 567 75 HOH HOH . 
K 5 HOH A 68 568 158 HOH HOH . 
K 5 HOH A 69 569 102 HOH HOH . 
K 5 HOH A 70 570 79 HOH HOH . 
K 5 HOH A 71 571 107 HOH HOH . 
K 5 HOH A 72 572 68 HOH HOH . 
K 5 HOH A 73 573 139 HOH HOH . 
K 5 HOH A 74 574 3 HOH HOH . 
K 5 HOH A 75 575 53 HOH HOH . 
K 5 HOH A 76 576 123 HOH HOH . 
K 5 HOH A 77 577 150 HOH HOH . 
K 5 HOH A 78 578 52 HOH HOH . 
K 5 HOH A 79 579 119 HOH HOH . 
K 5 HOH A 80 580 11 HOH HOH . 
K 5 HOH A 81 581 31 HOH HOH . 
K 5 HOH A 82 582 21 HOH HOH . 
K 5 HOH A 83 583 99 HOH HOH . 
K 5 HOH A 84 584 100 HOH HOH . 
K 5 HOH A 85 585 82 HOH HOH . 
K 5 HOH A 86 586 136 HOH HOH . 
K 5 HOH A 87 587 111 HOH HOH . 
K 5 HOH A 88 588 157 HOH HOH . 
K 5 HOH A 89 589 47 HOH HOH . 
K 5 HOH A 90 590 55 HOH HOH . 
K 5 HOH A 91 591 19 HOH HOH . 
K 5 HOH A 92 592 94 HOH HOH . 
K 5 HOH A 93 593 60 HOH HOH . 
K 5 HOH A 94 594 66 HOH HOH . 
K 5 HOH A 95 595 117 HOH HOH . 
K 5 HOH A 96 596 43 HOH HOH . 
K 5 HOH A 97 597 127 HOH HOH . 
K 5 HOH A 98 598 89 HOH HOH . 
K 5 HOH A 99 599 104 HOH HOH . 
K 5 HOH A 100 600 115 HOH HOH . 
K 5 HOH A 101 601 29 HOH HOH . 
K 5 HOH A 102 602 144 HOH HOH . 
K 5 HOH A 103 603 41 HOH HOH . 
K 5 HOH A 104 604 56 HOH HOH . 
K 5 HOH A 105 605 130 HOH HOH . 
K 5 HOH A 106 606 40 HOH HOH . 
K 5 HOH A 107 607 135 HOH HOH . 
K 5 HOH A 108 608 38 HOH HOH . 
K 5 HOH A 109 609 153 HOH HOH . 
K 5 HOH A 110 610 141 HOH HOH . 
K 5 HOH A 111 611 12 HOH HOH . 
K 5 HOH A 112 612 14 HOH HOH . 
K 5 HOH A 113 613 128 HOH HOH . 
K 5 HOH A 114 614 35 HOH HOH . 
K 5 HOH A 115 615 30 HOH HOH . 
K 5 HOH A 116 616 145 HOH HOH . 
K 5 HOH A 117 617 37 HOH HOH . 
K 5 HOH A 118 618 46 HOH HOH . 
K 5 HOH A 119 619 34 HOH HOH . 
K 5 HOH A 120 620 77 HOH HOH . 
K 5 HOH A 121 621 70 HOH HOH . 
K 5 HOH A 122 622 6 HOH HOH . 
K 5 HOH A 123 623 110 HOH HOH . 
K 5 HOH A 124 624 2 HOH HOH . 
K 5 HOH A 125 625 121 HOH HOH . 
K 5 HOH A 126 626 91 HOH HOH . 
K 5 HOH A 127 627 73 HOH HOH . 
K 5 HOH A 128 628 78 HOH HOH . 
K 5 HOH A 129 629 27 HOH HOH . 
K 5 HOH A 130 630 7 HOH HOH . 
K 5 HOH A 131 631 149 HOH HOH . 
K 5 HOH A 132 632 13 HOH HOH . 
K 5 HOH A 133 633 44 HOH HOH . 
K 5 HOH A 134 634 25 HOH HOH . 
K 5 HOH A 135 635 39 HOH HOH . 
K 5 HOH A 136 636 122 HOH HOH . 
K 5 HOH A 137 637 65 HOH HOH . 
K 5 HOH A 138 638 112 HOH HOH . 
K 5 HOH A 139 639 147 HOH HOH . 
K 5 HOH A 140 640 132 HOH HOH . 
K 5 HOH A 141 641 125 HOH HOH . 
K 5 HOH A 142 642 72 HOH HOH . 
K 5 HOH A 143 643 151 HOH HOH . 
K 5 HOH A 144 644 85 HOH HOH . 
K 5 HOH A 145 645 134 HOH HOH . 
K 5 HOH A 146 646 137 HOH HOH . 
K 5 HOH A 147 647 103 HOH HOH . 
K 5 HOH A 148 648 83 HOH HOH . 
K 5 HOH A 149 649 64 HOH HOH . 
K 5 HOH A 150 650 93 HOH HOH . 
K 5 HOH A 151 651 80 HOH HOH . 
K 5 HOH A 152 652 62 HOH HOH . 
K 5 HOH A 153 653 33 HOH HOH . 
K 5 HOH A 154 654 126 HOH HOH . 
K 5 HOH A 155 655 140 HOH HOH . 
K 5 HOH A 156 656 48 HOH HOH . 
K 5 HOH A 157 657 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 WHD . . . B 2 28.578 -0.043 -25.849 0.8 24.49 ? N1 WHD 401 A 1 
HETATM 2 C C4 WHD . . . B 2 23.061 7.094 -25.698 0.8 33.85 ? C4 WHD 401 A 1 
HETATM 3 C C5 WHD . . . B 2 24.831 5.667 -26.635 0.8 33.41 ? C5 WHD 401 A 1 
HETATM 4 C C6 WHD . . . B 2 25.674 4.41 -26.458 0.8 30.87 ? C6 WHD 401 A 1 
HETATM 5 C C7 WHD . . . B 2 27.012 4.423 -26.875 0.8 30.48 ? C7 WHD 401 A 1 
HETATM 6 C C8 WHD . . . B 2 27.831 3.29 -26.726 0.8 28.07 ? C8 WHD 401 A 1 
HETATM 7 C C10 WHD . . . B 2 28.044 0.95 -26.015 0.8 25.82 ? C10 WHD 401 A 1 
HETATM 8 C C13 WHD . . . B 2 20.607 7.346 -25.199 0.8 34.88 ? C13 WHD 401 A 1 
HETATM 9 N N WHD . . . B 2 23.741 5.772 -25.59 0.8 33.97 ? N WHD 401 A 1 
HETATM 10 C C WHD . . . B 2 19.795 7.549 -22.945 0.8 33.55 ? C WHD 401 A 1 
HETATM 11 C C1 WHD . . . B 2 21.101 7.478 -22.428 0.8 33.82 ? C1 WHD 401 A 1 
HETATM 12 C C11 WHD . . . B 2 25.94 2.118 -25.752 0.8 26.69 ? C11 WHD 401 A 1 
HETATM 13 C C12 WHD . . . B 2 25.134 3.251 -25.887 0.8 30.67 ? C12 WHD 401 A 1 
HETATM 14 C C14 WHD . . . B 2 19.539 7.512 -24.301 0.8 33.12 ? C14 WHD 401 A 1 
HETATM 15 C C2 WHD . . . B 2 22.161 7.342 -23.316 0.8 34.27 ? C2 WHD 401 A 1 
HETATM 16 C C3 WHD . . . B 2 21.925 7.258 -24.715 0.8 35.11 ? C3 WHD 401 A 1 
HETATM 17 C C9 WHD . . . B 2 27.286 2.152 -26.177 0.8 27.86 ? C9 WHD 401 A 1 
HETATM 18 F F WHD . . . B 2 18.746 7.602 -22.128 0.8 35.47 ? F WHD 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#