data_5RZ7
#
_model_server_result.job_id            LB8NoEYnt-AcK6UTpyAsDA 
_model_server_result.datetime_utc      '2024-11-16 19:38:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rz7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5RZ7 
#
_exptl.entry_id    5RZ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              224.256 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[2-methyl-1,3-bis(oxidanyl)propan-2-yl]-3-phenyl-urea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RZ7 
_cell.length_a            38.6 
_cell.length_b            77.56 
_cell.length_c            99.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RZ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C11 H16 N2 O3' 
_chem_comp.formula_weight    224.256 
_chem_comp.id                AYV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[2-methyl-1,3-bis(oxidanyl)propan-2-yl]-3-phenyl-urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 AYV doub 70 n y 
C8 C7 AYV sing 71 n y 
C9 C10 AYV sing 72 n y 
C7 C6 AYV doub 73 n y 
C10 C11 AYV doub 74 n y 
C6 C11 AYV sing 75 n y 
C6 N2 AYV sing 76 n n 
N2 C5 AYV sing 77 n n 
O2 C4 AYV sing 78 n n 
N1 C5 AYV sing 79 n n 
N1 C2 AYV sing 80 n n 
C5 O3 AYV doub 81 n n 
O1 C3 AYV sing 82 n n 
C4 C2 AYV sing 83 n n 
C2 C3 AYV sing 84 n n 
C2 C1 AYV sing 85 n n 
N1 H1 AYV sing 86 n n 
C4 H2 AYV sing 87 n n 
C4 H3 AYV sing 88 n n 
C7 H4 AYV sing 89 n n 
C8 H5 AYV sing 90 n n 
C10 H6 AYV sing 91 n n 
C1 H7 AYV sing 92 n n 
C1 H8 AYV sing 93 n n 
C1 H9 AYV sing 94 n n 
C3 H10 AYV sing 95 n n 
C3 H11 AYV sing 96 n n 
O1 H12 AYV sing 97 n n 
O2 H13 AYV sing 98 n n 
N2 H14 AYV sing 99 n n 
C9 H15 AYV sing 100 n n 
C11 H16 AYV sing 101 n n 
#
_atom_sites.entry_id                     5RZ7 
_atom_sites.fract_transf_matrix[1][1]    0.025907 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AYV A 1 401 401 AYV LIG . 
C 2 AYV A 1 402 501 AYV LIG . 
D 3 DMS A 1 403 1 DMS DMS . 
E 3 DMS A 1 404 2 DMS DMS . 
F 4 EDO A 1 405 1 EDO EDO . 
G 4 EDO A 1 406 2 EDO EDO . 
H 4 EDO A 1 407 3 EDO EDO . 
I 4 EDO A 1 408 4 EDO EDO . 
J 4 EDO A 1 409 5 EDO EDO . 
K 4 EDO A 1 410 6 EDO EDO . 
L 5 HOH A 1 501 113 HOH HOH . 
L 5 HOH A 2 502 127 HOH HOH . 
L 5 HOH A 3 503 96 HOH HOH . 
L 5 HOH A 4 504 87 HOH HOH . 
L 5 HOH A 5 505 97 HOH HOH . 
L 5 HOH A 6 506 1 HOH HOH . 
L 5 HOH A 7 507 108 HOH HOH . 
L 5 HOH A 8 508 95 HOH HOH . 
L 5 HOH A 9 509 129 HOH HOH . 
L 5 HOH A 10 510 133 HOH HOH . 
L 5 HOH A 11 511 58 HOH HOH . 
L 5 HOH A 12 512 51 HOH HOH . 
L 5 HOH A 13 513 26 HOH HOH . 
L 5 HOH A 14 514 105 HOH HOH . 
L 5 HOH A 15 515 50 HOH HOH . 
L 5 HOH A 16 516 124 HOH HOH . 
L 5 HOH A 17 517 5 HOH HOH . 
L 5 HOH A 18 518 138 HOH HOH . 
L 5 HOH A 19 519 146 HOH HOH . 
L 5 HOH A 20 520 111 HOH HOH . 
L 5 HOH A 21 521 11 HOH HOH . 
L 5 HOH A 22 522 59 HOH HOH . 
L 5 HOH A 23 523 148 HOH HOH . 
L 5 HOH A 24 524 82 HOH HOH . 
L 5 HOH A 25 525 61 HOH HOH . 
L 5 HOH A 26 526 28 HOH HOH . 
L 5 HOH A 27 527 43 HOH HOH . 
L 5 HOH A 28 528 42 HOH HOH . 
L 5 HOH A 29 529 76 HOH HOH . 
L 5 HOH A 30 530 90 HOH HOH . 
L 5 HOH A 31 531 67 HOH HOH . 
L 5 HOH A 32 532 47 HOH HOH . 
L 5 HOH A 33 533 45 HOH HOH . 
L 5 HOH A 34 534 86 HOH HOH . 
L 5 HOH A 35 535 60 HOH HOH . 
L 5 HOH A 36 536 106 HOH HOH . 
L 5 HOH A 37 537 54 HOH HOH . 
L 5 HOH A 38 538 10 HOH HOH . 
L 5 HOH A 39 539 115 HOH HOH . 
L 5 HOH A 40 540 36 HOH HOH . 
L 5 HOH A 41 541 52 HOH HOH . 
L 5 HOH A 42 542 101 HOH HOH . 
L 5 HOH A 43 543 9 HOH HOH . 
L 5 HOH A 44 544 63 HOH HOH . 
L 5 HOH A 45 545 22 HOH HOH . 
L 5 HOH A 46 546 57 HOH HOH . 
L 5 HOH A 47 547 62 HOH HOH . 
L 5 HOH A 48 548 92 HOH HOH . 
L 5 HOH A 49 549 120 HOH HOH . 
L 5 HOH A 50 550 18 HOH HOH . 
L 5 HOH A 51 551 88 HOH HOH . 
L 5 HOH A 52 552 150 HOH HOH . 
L 5 HOH A 53 553 116 HOH HOH . 
L 5 HOH A 54 554 4 HOH HOH . 
L 5 HOH A 55 555 3 HOH HOH . 
L 5 HOH A 56 556 8 HOH HOH . 
L 5 HOH A 57 557 109 HOH HOH . 
L 5 HOH A 58 558 53 HOH HOH . 
L 5 HOH A 59 559 16 HOH HOH . 
L 5 HOH A 60 560 143 HOH HOH . 
L 5 HOH A 61 561 32 HOH HOH . 
L 5 HOH A 62 562 75 HOH HOH . 
L 5 HOH A 63 563 29 HOH HOH . 
L 5 HOH A 64 564 81 HOH HOH . 
L 5 HOH A 65 565 94 HOH HOH . 
L 5 HOH A 66 566 104 HOH HOH . 
L 5 HOH A 67 567 100 HOH HOH . 
L 5 HOH A 68 568 31 HOH HOH . 
L 5 HOH A 69 569 91 HOH HOH . 
L 5 HOH A 70 570 98 HOH HOH . 
L 5 HOH A 71 571 99 HOH HOH . 
L 5 HOH A 72 572 79 HOH HOH . 
L 5 HOH A 73 573 69 HOH HOH . 
L 5 HOH A 74 574 123 HOH HOH . 
L 5 HOH A 75 575 21 HOH HOH . 
L 5 HOH A 76 576 20 HOH HOH . 
L 5 HOH A 77 577 40 HOH HOH . 
L 5 HOH A 78 578 142 HOH HOH . 
L 5 HOH A 79 579 17 HOH HOH . 
L 5 HOH A 80 580 68 HOH HOH . 
L 5 HOH A 81 581 114 HOH HOH . 
L 5 HOH A 82 582 89 HOH HOH . 
L 5 HOH A 83 583 55 HOH HOH . 
L 5 HOH A 84 584 66 HOH HOH . 
L 5 HOH A 85 585 74 HOH HOH . 
L 5 HOH A 86 586 84 HOH HOH . 
L 5 HOH A 87 587 102 HOH HOH . 
L 5 HOH A 88 588 56 HOH HOH . 
L 5 HOH A 89 589 128 HOH HOH . 
L 5 HOH A 90 590 136 HOH HOH . 
L 5 HOH A 91 591 141 HOH HOH . 
L 5 HOH A 92 592 144 HOH HOH . 
L 5 HOH A 93 593 46 HOH HOH . 
L 5 HOH A 94 594 19 HOH HOH . 
L 5 HOH A 95 595 24 HOH HOH . 
L 5 HOH A 96 596 83 HOH HOH . 
L 5 HOH A 97 597 14 HOH HOH . 
L 5 HOH A 98 598 110 HOH HOH . 
L 5 HOH A 99 599 23 HOH HOH . 
L 5 HOH A 100 600 44 HOH HOH . 
L 5 HOH A 101 601 12 HOH HOH . 
L 5 HOH A 102 602 37 HOH HOH . 
L 5 HOH A 103 603 38 HOH HOH . 
L 5 HOH A 104 604 35 HOH HOH . 
L 5 HOH A 105 605 30 HOH HOH . 
L 5 HOH A 106 606 122 HOH HOH . 
L 5 HOH A 107 607 107 HOH HOH . 
L 5 HOH A 108 608 117 HOH HOH . 
L 5 HOH A 109 609 130 HOH HOH . 
L 5 HOH A 110 610 41 HOH HOH . 
L 5 HOH A 111 611 70 HOH HOH . 
L 5 HOH A 112 612 6 HOH HOH . 
L 5 HOH A 113 613 25 HOH HOH . 
L 5 HOH A 114 614 39 HOH HOH . 
L 5 HOH A 115 615 119 HOH HOH . 
L 5 HOH A 116 616 34 HOH HOH . 
L 5 HOH A 117 617 27 HOH HOH . 
L 5 HOH A 118 618 71 HOH HOH . 
L 5 HOH A 119 619 15 HOH HOH . 
L 5 HOH A 120 620 139 HOH HOH . 
L 5 HOH A 121 621 2 HOH HOH . 
L 5 HOH A 122 622 135 HOH HOH . 
L 5 HOH A 123 623 125 HOH HOH . 
L 5 HOH A 124 624 7 HOH HOH . 
L 5 HOH A 125 625 73 HOH HOH . 
L 5 HOH A 126 626 77 HOH HOH . 
L 5 HOH A 127 627 121 HOH HOH . 
L 5 HOH A 128 628 78 HOH HOH . 
L 5 HOH A 129 629 13 HOH HOH . 
L 5 HOH A 130 630 65 HOH HOH . 
L 5 HOH A 131 631 112 HOH HOH . 
L 5 HOH A 132 632 149 HOH HOH . 
L 5 HOH A 133 633 147 HOH HOH . 
L 5 HOH A 134 634 72 HOH HOH . 
L 5 HOH A 135 635 132 HOH HOH . 
L 5 HOH A 136 636 145 HOH HOH . 
L 5 HOH A 137 637 85 HOH HOH . 
L 5 HOH A 138 638 137 HOH HOH . 
L 5 HOH A 139 639 118 HOH HOH . 
L 5 HOH A 140 640 103 HOH HOH . 
L 5 HOH A 141 641 64 HOH HOH . 
L 5 HOH A 142 642 93 HOH HOH . 
L 5 HOH A 143 643 134 HOH HOH . 
L 5 HOH A 144 644 80 HOH HOH . 
L 5 HOH A 145 645 33 HOH HOH . 
L 5 HOH A 146 646 48 HOH HOH . 
L 5 HOH A 147 647 140 HOH HOH . 
L 5 HOH A 148 648 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 AYV . . . C 2 -13.291 -10.955 -16.953 0.58 64.93 ? N1 AYV 402 A 1 
HETATM 2 C C4 AYV . . . C 2 -12.643 -12.446 -18.896 0.58 68.9 ? C4 AYV 402 A 1 
HETATM 3 C C5 AYV . . . C 2 -12.107 -10.877 -16.151 0.58 58.55 ? C5 AYV 402 A 1 
HETATM 4 C C6 AYV . . . C 2 -10.845 -9.224 -14.658 0.58 41.55 ? C6 AYV 402 A 1 
HETATM 5 C C7 AYV . . . C 2 -9.562 -9.3 -15.23 0.58 39.93 ? C7 AYV 402 A 1 
HETATM 6 C C8 AYV . . . C 2 -8.463 -8.793 -14.542 0.58 38.7 ? C8 AYV 402 A 1 
HETATM 7 C C10 AYV . . . C 2 -9.895 -8.174 -12.717 0.58 38.05 ? C10 AYV 402 A 1 
HETATM 8 C C1 AYV . . . C 2 -13.854 -13.396 -16.869 0.58 65.84 ? C1 AYV 402 A 1 
HETATM 9 C C2 AYV . . . C 2 -13.701 -12.147 -17.752 0.58 66.96 ? C2 AYV 402 A 1 
HETATM 10 C C3 AYV . . . C 2 -15.079 -11.871 -18.438 0.58 67.11 ? C3 AYV 402 A 1 
HETATM 11 O O1 AYV . . . C 2 -15.013 -10.652 -19.142 0.58 68.95 ? O1 AYV 402 A 1 
HETATM 12 O O2 AYV . . . C 2 -11.328 -12.079 -18.591 0.58 70.26 ? O2 AYV 402 A 1 
HETATM 13 O O3 AYV . . . C 2 -11.307 -11.826 -16.028 0.58 57.74 ? O3 AYV 402 A 1 
HETATM 14 N N2 AYV . . . C 2 -11.928 -9.616 -15.49 0.58 50.88 ? N2 AYV 402 A 1 
HETATM 15 C C9 AYV . . . C 2 -8.625 -8.219 -13.287 0.58 38.32 ? C9 AYV 402 A 1 
HETATM 16 C C11 AYV . . . C 2 -11.007 -8.677 -13.395 0.58 39.52 ? C11 AYV 402 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           16 
#