data_5RZ9
#
_model_server_result.job_id            7mYbBox3ofHtX6CCcL_16Q 
_model_server_result.datetime_utc      '2024-11-14 18:13:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5RZ9 
#
_exptl.entry_id    5RZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RZ9 
_cell.length_a            38.55 
_cell.length_b            77.54 
_cell.length_c            99.5 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     5RZ9 
_atom_sites.fract_transf_matrix[1][1]    0.02594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012897 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01005 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GT4 A 1 401 401 GT4 LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 4 EDO A 1 404 1 EDO EDO . 
F 4 EDO A 1 405 2 EDO EDO . 
G 4 EDO A 1 406 3 EDO EDO . 
H 4 EDO A 1 407 4 EDO EDO . 
I 4 EDO A 1 408 5 EDO EDO . 
J 4 EDO A 1 409 6 EDO EDO . 
K 5 HOH A 1 501 127 HOH HOH . 
K 5 HOH A 2 502 113 HOH HOH . 
K 5 HOH A 3 503 97 HOH HOH . 
K 5 HOH A 4 504 124 HOH HOH . 
K 5 HOH A 5 505 96 HOH HOH . 
K 5 HOH A 6 506 95 HOH HOH . 
K 5 HOH A 7 507 108 HOH HOH . 
K 5 HOH A 8 508 26 HOH HOH . 
K 5 HOH A 9 509 129 HOH HOH . 
K 5 HOH A 10 510 1 HOH HOH . 
K 5 HOH A 11 511 133 HOH HOH . 
K 5 HOH A 12 512 59 HOH HOH . 
K 5 HOH A 13 513 75 HOH HOH . 
K 5 HOH A 14 514 43 HOH HOH . 
K 5 HOH A 15 515 74 HOH HOH . 
K 5 HOH A 16 516 146 HOH HOH . 
K 5 HOH A 17 517 116 HOH HOH . 
K 5 HOH A 18 518 28 HOH HOH . 
K 5 HOH A 19 519 50 HOH HOH . 
K 5 HOH A 20 520 82 HOH HOH . 
K 5 HOH A 21 521 109 HOH HOH . 
K 5 HOH A 22 522 11 HOH HOH . 
K 5 HOH A 23 523 45 HOH HOH . 
K 5 HOH A 24 524 42 HOH HOH . 
K 5 HOH A 25 525 10 HOH HOH . 
K 5 HOH A 26 526 148 HOH HOH . 
K 5 HOH A 27 527 152 HOH HOH . 
K 5 HOH A 28 528 111 HOH HOH . 
K 5 HOH A 29 529 47 HOH HOH . 
K 5 HOH A 30 530 67 HOH HOH . 
K 5 HOH A 31 531 8 HOH HOH . 
K 5 HOH A 32 532 36 HOH HOH . 
K 5 HOH A 33 533 63 HOH HOH . 
K 5 HOH A 34 534 151 HOH HOH . 
K 5 HOH A 35 535 61 HOH HOH . 
K 5 HOH A 36 536 51 HOH HOH . 
K 5 HOH A 37 537 90 HOH HOH . 
K 5 HOH A 38 538 92 HOH HOH . 
K 5 HOH A 39 539 31 HOH HOH . 
K 5 HOH A 40 540 5 HOH HOH . 
K 5 HOH A 41 541 138 HOH HOH . 
K 5 HOH A 42 542 86 HOH HOH . 
K 5 HOH A 43 543 88 HOH HOH . 
K 5 HOH A 44 544 54 HOH HOH . 
K 5 HOH A 45 545 18 HOH HOH . 
K 5 HOH A 46 546 9 HOH HOH . 
K 5 HOH A 47 547 60 HOH HOH . 
K 5 HOH A 48 548 4 HOH HOH . 
K 5 HOH A 49 549 101 HOH HOH . 
K 5 HOH A 50 550 22 HOH HOH . 
K 5 HOH A 51 551 58 HOH HOH . 
K 5 HOH A 52 552 105 HOH HOH . 
K 5 HOH A 53 553 115 HOH HOH . 
K 5 HOH A 54 554 53 HOH HOH . 
K 5 HOH A 55 555 120 HOH HOH . 
K 5 HOH A 56 556 142 HOH HOH . 
K 5 HOH A 57 557 16 HOH HOH . 
K 5 HOH A 58 558 143 HOH HOH . 
K 5 HOH A 59 559 35 HOH HOH . 
K 5 HOH A 60 560 57 HOH HOH . 
K 5 HOH A 61 561 68 HOH HOH . 
K 5 HOH A 62 562 76 HOH HOH . 
K 5 HOH A 63 563 89 HOH HOH . 
K 5 HOH A 64 564 87 HOH HOH . 
K 5 HOH A 65 565 99 HOH HOH . 
K 5 HOH A 66 566 117 HOH HOH . 
K 5 HOH A 67 567 94 HOH HOH . 
K 5 HOH A 68 568 3 HOH HOH . 
K 5 HOH A 69 569 150 HOH HOH . 
K 5 HOH A 70 570 114 HOH HOH . 
K 5 HOH A 71 571 52 HOH HOH . 
K 5 HOH A 72 572 21 HOH HOH . 
K 5 HOH A 73 573 98 HOH HOH . 
K 5 HOH A 74 574 71 HOH HOH . 
K 5 HOH A 75 575 79 HOH HOH . 
K 5 HOH A 76 576 14 HOH HOH . 
K 5 HOH A 77 577 139 HOH HOH . 
K 5 HOH A 78 578 123 HOH HOH . 
K 5 HOH A 79 579 106 HOH HOH . 
K 5 HOH A 80 580 100 HOH HOH . 
K 5 HOH A 81 581 69 HOH HOH . 
K 5 HOH A 82 582 32 HOH HOH . 
K 5 HOH A 83 583 55 HOH HOH . 
K 5 HOH A 84 584 19 HOH HOH . 
K 5 HOH A 85 585 17 HOH HOH . 
K 5 HOH A 86 586 40 HOH HOH . 
K 5 HOH A 87 587 144 HOH HOH . 
K 5 HOH A 88 588 102 HOH HOH . 
K 5 HOH A 89 589 84 HOH HOH . 
K 5 HOH A 90 590 118 HOH HOH . 
K 5 HOH A 91 591 141 HOH HOH . 
K 5 HOH A 92 592 56 HOH HOH . 
K 5 HOH A 93 593 104 HOH HOH . 
K 5 HOH A 94 594 23 HOH HOH . 
K 5 HOH A 95 595 29 HOH HOH . 
K 5 HOH A 96 596 38 HOH HOH . 
K 5 HOH A 97 597 20 HOH HOH . 
K 5 HOH A 98 598 136 HOH HOH . 
K 5 HOH A 99 599 30 HOH HOH . 
K 5 HOH A 100 600 25 HOH HOH . 
K 5 HOH A 101 601 119 HOH HOH . 
K 5 HOH A 102 602 66 HOH HOH . 
K 5 HOH A 103 603 24 HOH HOH . 
K 5 HOH A 104 604 128 HOH HOH . 
K 5 HOH A 105 605 44 HOH HOH . 
K 5 HOH A 106 606 107 HOH HOH . 
K 5 HOH A 107 607 70 HOH HOH . 
K 5 HOH A 108 608 46 HOH HOH . 
K 5 HOH A 109 609 12 HOH HOH . 
K 5 HOH A 110 610 6 HOH HOH . 
K 5 HOH A 111 611 37 HOH HOH . 
K 5 HOH A 112 612 2 HOH HOH . 
K 5 HOH A 113 613 34 HOH HOH . 
K 5 HOH A 114 614 7 HOH HOH . 
K 5 HOH A 115 615 91 HOH HOH . 
K 5 HOH A 116 616 41 HOH HOH . 
K 5 HOH A 117 617 73 HOH HOH . 
K 5 HOH A 118 618 110 HOH HOH . 
K 5 HOH A 119 619 13 HOH HOH . 
K 5 HOH A 120 620 39 HOH HOH . 
K 5 HOH A 121 621 77 HOH HOH . 
K 5 HOH A 122 622 85 HOH HOH . 
K 5 HOH A 123 623 149 HOH HOH . 
K 5 HOH A 124 624 125 HOH HOH . 
K 5 HOH A 125 625 145 HOH HOH . 
K 5 HOH A 126 626 135 HOH HOH . 
K 5 HOH A 127 627 27 HOH HOH . 
K 5 HOH A 128 628 65 HOH HOH . 
K 5 HOH A 129 629 78 HOH HOH . 
K 5 HOH A 130 630 112 HOH HOH . 
K 5 HOH A 131 631 147 HOH HOH . 
K 5 HOH A 132 632 72 HOH HOH . 
K 5 HOH A 133 633 122 HOH HOH . 
K 5 HOH A 134 634 121 HOH HOH . 
K 5 HOH A 135 635 130 HOH HOH . 
K 5 HOH A 136 636 132 HOH HOH . 
K 5 HOH A 137 637 93 HOH HOH . 
K 5 HOH A 138 638 137 HOH HOH . 
K 5 HOH A 139 639 83 HOH HOH . 
K 5 HOH A 140 640 134 HOH HOH . 
K 5 HOH A 141 641 64 HOH HOH . 
K 5 HOH A 142 642 103 HOH HOH . 
K 5 HOH A 143 643 80 HOH HOH . 
K 5 HOH A 144 644 62 HOH HOH . 
K 5 HOH A 145 645 33 HOH HOH . 
K 5 HOH A 146 646 140 HOH HOH . 
K 5 HOH A 147 647 48 HOH HOH . 
K 5 HOH A 148 648 126 HOH HOH . 
K 5 HOH A 149 649 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . C 3 13.738 -0.106 -26.456 1 61.21 ? S DMS 402 A 1 
HETATM 2 O O DMS . . . C 3 12.254 -0.368 -26.589 1 56.28 ? O DMS 402 A 1 
HETATM 3 C C1 DMS . . . C 3 14.319 -1.16 -25.139 1 55.01 ? C1 DMS 402 A 1 
HETATM 4 C C2 DMS . . . C 3 14.508 -0.963 -27.816 1 56.63 ? C2 DMS 402 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#