data_5RZA
#
_model_server_result.job_id            JupH7yIhuamIFAWYf1zp9Q 
_model_server_result.datetime_utc      '2025-06-22 01:43:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5RZA 
#
_exptl.entry_id    5RZA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.271 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(3-fluorophenyl)methyl]-1lambda~6~,2-thiazolidine-1,1-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RZA 
_cell.length_a            38.75 
_cell.length_b            77.71 
_cell.length_c            99.66 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C10 H12 F N O2 S' 
_chem_comp.formula_weight    229.271 
_chem_comp.id                WHM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(3-fluorophenyl)methyl]-1lambda~6~,2-thiazolidine-1,1-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F C WHM sing 394 n n 
C C1 WHM sing 395 n y 
C1 C2 WHM doub 396 n y 
C2 C3 WHM sing 397 n y 
C3 C4 WHM doub 398 n y 
C4 C5 WHM sing 399 n n 
C5 N WHM sing 400 n n 
N C6 WHM sing 401 n n 
C6 C7 WHM sing 402 n n 
C7 C8 WHM sing 403 n n 
C8 S WHM sing 404 n n 
N S WHM sing 405 n n 
O S WHM doub 406 n n 
S O1 WHM doub 407 n n 
C9 C4 WHM sing 408 n y 
C C9 WHM doub 409 n y 
C5 H3 WHM sing 410 n n 
C5 H4 WHM sing 411 n n 
C6 H5 WHM sing 412 n n 
C6 H6 WHM sing 413 n n 
C7 H7 WHM sing 414 n n 
C7 H8 WHM sing 415 n n 
C8 H9 WHM sing 416 n n 
C8 H10 WHM sing 417 n n 
C1 H WHM sing 418 n n 
C2 H1 WHM sing 419 n n 
C3 H2 WHM sing 420 n n 
C9 H11 WHM sing 421 n n 
#
_atom_sites.entry_id                     5RZA 
_atom_sites.fract_transf_matrix[1][1]    0.025806 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WHM A 1 401 401 WHM LIG . 
C 2 WHM A 1 402 501 WHM LIG . 
D 3 DMS A 1 403 1 DMS DMS . 
E 3 DMS A 1 404 2 DMS DMS . 
F 4 EDO A 1 405 1 EDO EDO . 
G 4 EDO A 1 406 2 EDO EDO . 
H 4 EDO A 1 407 3 EDO EDO . 
I 4 EDO A 1 408 4 EDO EDO . 
J 4 EDO A 1 409 5 EDO EDO . 
K 4 EDO A 1 410 6 EDO EDO . 
L 5 HOH A 1 501 151 HOH HOH . 
L 5 HOH A 2 502 127 HOH HOH . 
L 5 HOH A 3 503 113 HOH HOH . 
L 5 HOH A 4 504 133 HOH HOH . 
L 5 HOH A 5 505 79 HOH HOH . 
L 5 HOH A 6 506 74 HOH HOH . 
L 5 HOH A 7 507 96 HOH HOH . 
L 5 HOH A 8 508 51 HOH HOH . 
L 5 HOH A 9 509 95 HOH HOH . 
L 5 HOH A 10 510 111 HOH HOH . 
L 5 HOH A 11 511 97 HOH HOH . 
L 5 HOH A 12 512 129 HOH HOH . 
L 5 HOH A 13 513 76 HOH HOH . 
L 5 HOH A 14 514 101 HOH HOH . 
L 5 HOH A 15 515 120 HOH HOH . 
L 5 HOH A 16 516 105 HOH HOH . 
L 5 HOH A 17 517 43 HOH HOH . 
L 5 HOH A 18 518 124 HOH HOH . 
L 5 HOH A 19 519 138 HOH HOH . 
L 5 HOH A 20 520 47 HOH HOH . 
L 5 HOH A 21 521 148 HOH HOH . 
L 5 HOH A 22 522 63 HOH HOH . 
L 5 HOH A 23 523 1 HOH HOH . 
L 5 HOH A 24 524 59 HOH HOH . 
L 5 HOH A 25 525 90 HOH HOH . 
L 5 HOH A 26 526 42 HOH HOH . 
L 5 HOH A 27 527 75 HOH HOH . 
L 5 HOH A 28 528 28 HOH HOH . 
L 5 HOH A 29 529 36 HOH HOH . 
L 5 HOH A 30 530 116 HOH HOH . 
L 5 HOH A 31 531 50 HOH HOH . 
L 5 HOH A 32 532 118 HOH HOH . 
L 5 HOH A 33 533 10 HOH HOH . 
L 5 HOH A 34 534 98 HOH HOH . 
L 5 HOH A 35 535 21 HOH HOH . 
L 5 HOH A 36 536 60 HOH HOH . 
L 5 HOH A 37 537 106 HOH HOH . 
L 5 HOH A 38 538 88 HOH HOH . 
L 5 HOH A 39 539 86 HOH HOH . 
L 5 HOH A 40 540 8 HOH HOH . 
L 5 HOH A 41 541 11 HOH HOH . 
L 5 HOH A 42 542 67 HOH HOH . 
L 5 HOH A 43 543 143 HOH HOH . 
L 5 HOH A 44 544 100 HOH HOH . 
L 5 HOH A 45 545 117 HOH HOH . 
L 5 HOH A 46 546 4 HOH HOH . 
L 5 HOH A 47 547 57 HOH HOH . 
L 5 HOH A 48 548 26 HOH HOH . 
L 5 HOH A 49 549 45 HOH HOH . 
L 5 HOH A 50 550 146 HOH HOH . 
L 5 HOH A 51 551 108 HOH HOH . 
L 5 HOH A 52 552 99 HOH HOH . 
L 5 HOH A 53 553 81 HOH HOH . 
L 5 HOH A 54 554 52 HOH HOH . 
L 5 HOH A 55 555 18 HOH HOH . 
L 5 HOH A 56 556 68 HOH HOH . 
L 5 HOH A 57 557 54 HOH HOH . 
L 5 HOH A 58 558 61 HOH HOH . 
L 5 HOH A 59 559 82 HOH HOH . 
L 5 HOH A 60 560 5 HOH HOH . 
L 5 HOH A 61 561 58 HOH HOH . 
L 5 HOH A 62 562 55 HOH HOH . 
L 5 HOH A 63 563 16 HOH HOH . 
L 5 HOH A 64 564 22 HOH HOH . 
L 5 HOH A 65 565 92 HOH HOH . 
L 5 HOH A 66 566 150 HOH HOH . 
L 5 HOH A 67 567 89 HOH HOH . 
L 5 HOH A 68 568 29 HOH HOH . 
L 5 HOH A 69 569 139 HOH HOH . 
L 5 HOH A 70 570 107 HOH HOH . 
L 5 HOH A 71 571 115 HOH HOH . 
L 5 HOH A 72 572 53 HOH HOH . 
L 5 HOH A 73 573 44 HOH HOH . 
L 5 HOH A 74 574 104 HOH HOH . 
L 5 HOH A 75 575 40 HOH HOH . 
L 5 HOH A 76 576 31 HOH HOH . 
L 5 HOH A 77 577 9 HOH HOH . 
L 5 HOH A 78 578 17 HOH HOH . 
L 5 HOH A 79 579 109 HOH HOH . 
L 5 HOH A 80 580 20 HOH HOH . 
L 5 HOH A 81 581 14 HOH HOH . 
L 5 HOH A 82 582 35 HOH HOH . 
L 5 HOH A 83 583 3 HOH HOH . 
L 5 HOH A 84 584 84 HOH HOH . 
L 5 HOH A 85 585 142 HOH HOH . 
L 5 HOH A 86 586 83 HOH HOH . 
L 5 HOH A 87 587 32 HOH HOH . 
L 5 HOH A 88 588 141 HOH HOH . 
L 5 HOH A 89 589 135 HOH HOH . 
L 5 HOH A 90 590 144 HOH HOH . 
L 5 HOH A 91 591 136 HOH HOH . 
L 5 HOH A 92 592 69 HOH HOH . 
L 5 HOH A 93 593 15 HOH HOH . 
L 5 HOH A 94 594 30 HOH HOH . 
L 5 HOH A 95 595 94 HOH HOH . 
L 5 HOH A 96 596 145 HOH HOH . 
L 5 HOH A 97 597 24 HOH HOH . 
L 5 HOH A 98 598 114 HOH HOH . 
L 5 HOH A 99 599 38 HOH HOH . 
L 5 HOH A 100 600 56 HOH HOH . 
L 5 HOH A 101 601 66 HOH HOH . 
L 5 HOH A 102 602 46 HOH HOH . 
L 5 HOH A 103 603 91 HOH HOH . 
L 5 HOH A 104 604 112 HOH HOH . 
L 5 HOH A 105 605 70 HOH HOH . 
L 5 HOH A 106 606 6 HOH HOH . 
L 5 HOH A 107 607 23 HOH HOH . 
L 5 HOH A 108 608 110 HOH HOH . 
L 5 HOH A 109 609 73 HOH HOH . 
L 5 HOH A 110 610 12 HOH HOH . 
L 5 HOH A 111 611 37 HOH HOH . 
L 5 HOH A 112 612 71 HOH HOH . 
L 5 HOH A 113 613 128 HOH HOH . 
L 5 HOH A 114 614 77 HOH HOH . 
L 5 HOH A 115 615 7 HOH HOH . 
L 5 HOH A 116 616 19 HOH HOH . 
L 5 HOH A 117 617 125 HOH HOH . 
L 5 HOH A 118 618 122 HOH HOH . 
L 5 HOH A 119 619 41 HOH HOH . 
L 5 HOH A 120 620 2 HOH HOH . 
L 5 HOH A 121 621 27 HOH HOH . 
L 5 HOH A 122 622 65 HOH HOH . 
L 5 HOH A 123 623 39 HOH HOH . 
L 5 HOH A 124 624 130 HOH HOH . 
L 5 HOH A 125 625 13 HOH HOH . 
L 5 HOH A 126 626 147 HOH HOH . 
L 5 HOH A 127 627 78 HOH HOH . 
L 5 HOH A 128 628 25 HOH HOH . 
L 5 HOH A 129 629 102 HOH HOH . 
L 5 HOH A 130 630 34 HOH HOH . 
L 5 HOH A 131 631 149 HOH HOH . 
L 5 HOH A 132 632 87 HOH HOH . 
L 5 HOH A 133 633 121 HOH HOH . 
L 5 HOH A 134 634 119 HOH HOH . 
L 5 HOH A 135 635 123 HOH HOH . 
L 5 HOH A 136 636 132 HOH HOH . 
L 5 HOH A 137 637 72 HOH HOH . 
L 5 HOH A 138 638 103 HOH HOH . 
L 5 HOH A 139 639 85 HOH HOH . 
L 5 HOH A 140 640 64 HOH HOH . 
L 5 HOH A 141 641 137 HOH HOH . 
L 5 HOH A 142 642 134 HOH HOH . 
L 5 HOH A 143 643 93 HOH HOH . 
L 5 HOH A 144 644 80 HOH HOH . 
L 5 HOH A 145 645 62 HOH HOH . 
L 5 HOH A 146 646 48 HOH HOH . 
L 5 HOH A 147 647 33 HOH HOH . 
L 5 HOH A 148 648 140 HOH HOH . 
L 5 HOH A 149 649 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 WHM . . . B 2 -11.94 2.315 -23.14 0.62 54.09 ? C4 WHM 401 A 1 
HETATM 2 C C5 WHM . . . B 2 -11.495 3.126 -24.371 0.62 52.81 ? C5 WHM 401 A 1 
HETATM 3 C C6 WHM . . . B 2 -11.455 2.909 -26.857 0.62 46.5 ? C6 WHM 401 A 1 
HETATM 4 C C7 WHM . . . B 2 -10.163 3.297 -27.594 0.62 46.54 ? C7 WHM 401 A 1 
HETATM 5 C C8 WHM . . . B 2 -9.127 2.225 -27.22 0.62 43.93 ? C8 WHM 401 A 1 
HETATM 6 N N WHM . . . B 2 -10.89 2.494 -25.584 0.62 48.22 ? N WHM 401 A 1 
HETATM 7 C C WHM . . . B 2 -13.021 2.465 -20.991 0.62 56.78 ? C WHM 401 A 1 
HETATM 8 O O WHM . . . B 2 -8.705 1.803 -24.702 0.62 41.6 ? O WHM 401 A 1 
HETATM 9 C C1 WHM . . . B 2 -12.86 1.071 -20.768 0.62 57.37 ? C1 WHM 401 A 1 
HETATM 10 C C2 WHM . . . B 2 -12.222 0.313 -21.765 0.62 56.39 ? C2 WHM 401 A 1 
HETATM 11 C C3 WHM . . . B 2 -11.76 0.924 -22.954 0.62 55.45 ? C3 WHM 401 A 1 
HETATM 12 C C9 WHM . . . B 2 -12.567 3.074 -22.154 0.62 53.47 ? C9 WHM 401 A 1 
HETATM 13 F F WHM . . . B 2 -13.624 3.245 -20.082 0.62 58.04 ? F WHM 401 A 1 
HETATM 14 O O1 WHM . . . B 2 -9.867 0.095 -25.951 0.62 39.23 ? O1 WHM 401 A 1 
HETATM 15 S S WHM . . . B 2 -9.579 1.488 -25.756 0.62 45.06 ? S WHM 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#