data_5RZB # _model_server_result.job_id v40kH-BPzbQMqUUZuupJbg _model_server_result.datetime_utc '2024-12-23 06:35:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5RZB # _exptl.entry_id 5RZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RZB _cell.length_a 38.55 _cell.length_b 77.2 _cell.length_c 99.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5RZB _atom_sites.fract_transf_matrix[1][1] 0.02594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFY A 1 401 401 SFY LIG . C 3 DMS A 1 402 1 DMS DMS . D 4 EDO A 1 403 1 EDO EDO . E 4 EDO A 1 404 2 EDO EDO . F 4 EDO A 1 405 3 EDO EDO . G 4 EDO A 1 406 4 EDO EDO . H 4 EDO A 1 407 5 EDO EDO . I 4 EDO A 1 408 6 EDO EDO . J 5 HOH A 1 501 113 HOH HOH . J 5 HOH A 2 502 96 HOH HOH . J 5 HOH A 3 503 9 HOH HOH . J 5 HOH A 4 504 148 HOH HOH . J 5 HOH A 5 505 26 HOH HOH . J 5 HOH A 6 506 129 HOH HOH . J 5 HOH A 7 507 1 HOH HOH . J 5 HOH A 8 508 151 HOH HOH . J 5 HOH A 9 509 50 HOH HOH . J 5 HOH A 10 510 133 HOH HOH . J 5 HOH A 11 511 95 HOH HOH . J 5 HOH A 12 512 97 HOH HOH . J 5 HOH A 13 513 90 HOH HOH . J 5 HOH A 14 514 59 HOH HOH . J 5 HOH A 15 515 124 HOH HOH . J 5 HOH A 16 516 75 HOH HOH . J 5 HOH A 17 517 143 HOH HOH . J 5 HOH A 18 518 28 HOH HOH . J 5 HOH A 19 519 109 HOH HOH . J 5 HOH A 20 520 105 HOH HOH . J 5 HOH A 21 521 116 HOH HOH . J 5 HOH A 22 522 108 HOH HOH . J 5 HOH A 23 523 43 HOH HOH . J 5 HOH A 24 524 63 HOH HOH . J 5 HOH A 25 525 42 HOH HOH . J 5 HOH A 26 526 146 HOH HOH . J 5 HOH A 27 527 45 HOH HOH . J 5 HOH A 28 528 5 HOH HOH . J 5 HOH A 29 529 138 HOH HOH . J 5 HOH A 30 530 67 HOH HOH . J 5 HOH A 31 531 36 HOH HOH . J 5 HOH A 32 532 142 HOH HOH . J 5 HOH A 33 533 111 HOH HOH . J 5 HOH A 34 534 61 HOH HOH . J 5 HOH A 35 535 35 HOH HOH . J 5 HOH A 36 536 10 HOH HOH . J 5 HOH A 37 537 83 HOH HOH . J 5 HOH A 38 538 31 HOH HOH . J 5 HOH A 39 539 87 HOH HOH . J 5 HOH A 40 540 22 HOH HOH . J 5 HOH A 41 541 76 HOH HOH . J 5 HOH A 42 542 82 HOH HOH . J 5 HOH A 43 543 8 HOH HOH . J 5 HOH A 44 544 57 HOH HOH . J 5 HOH A 45 545 88 HOH HOH . J 5 HOH A 46 546 92 HOH HOH . J 5 HOH A 47 547 74 HOH HOH . J 5 HOH A 48 548 150 HOH HOH . J 5 HOH A 49 549 51 HOH HOH . J 5 HOH A 50 550 101 HOH HOH . J 5 HOH A 51 551 81 HOH HOH . J 5 HOH A 52 552 84 HOH HOH . J 5 HOH A 53 553 86 HOH HOH . J 5 HOH A 54 554 55 HOH HOH . J 5 HOH A 55 555 18 HOH HOH . J 5 HOH A 56 556 53 HOH HOH . J 5 HOH A 57 557 52 HOH HOH . J 5 HOH A 58 558 17 HOH HOH . J 5 HOH A 59 559 118 HOH HOH . J 5 HOH A 60 560 58 HOH HOH . J 5 HOH A 61 561 21 HOH HOH . J 5 HOH A 62 562 139 HOH HOH . J 5 HOH A 63 563 68 HOH HOH . J 5 HOH A 64 564 4 HOH HOH . J 5 HOH A 65 565 69 HOH HOH . J 5 HOH A 66 566 141 HOH HOH . J 5 HOH A 67 567 127 HOH HOH . J 5 HOH A 68 568 24 HOH HOH . J 5 HOH A 69 569 19 HOH HOH . J 5 HOH A 70 570 100 HOH HOH . J 5 HOH A 71 571 128 HOH HOH . J 5 HOH A 72 572 40 HOH HOH . J 5 HOH A 73 573 47 HOH HOH . J 5 HOH A 74 574 66 HOH HOH . J 5 HOH A 75 575 130 HOH HOH . J 5 HOH A 76 576 29 HOH HOH . J 5 HOH A 77 577 79 HOH HOH . J 5 HOH A 78 578 11 HOH HOH . J 5 HOH A 79 579 98 HOH HOH . J 5 HOH A 80 580 20 HOH HOH . J 5 HOH A 81 581 32 HOH HOH . J 5 HOH A 82 582 16 HOH HOH . J 5 HOH A 83 583 114 HOH HOH . J 5 HOH A 84 584 102 HOH HOH . J 5 HOH A 85 585 89 HOH HOH . J 5 HOH A 86 586 123 HOH HOH . J 5 HOH A 87 587 3 HOH HOH . J 5 HOH A 88 588 60 HOH HOH . J 5 HOH A 89 589 23 HOH HOH . J 5 HOH A 90 590 71 HOH HOH . J 5 HOH A 91 591 99 HOH HOH . J 5 HOH A 92 592 107 HOH HOH . J 5 HOH A 93 593 15 HOH HOH . J 5 HOH A 94 594 125 HOH HOH . J 5 HOH A 95 595 144 HOH HOH . J 5 HOH A 96 596 136 HOH HOH . J 5 HOH A 97 597 12 HOH HOH . J 5 HOH A 98 598 38 HOH HOH . J 5 HOH A 99 599 104 HOH HOH . J 5 HOH A 100 600 14 HOH HOH . J 5 HOH A 101 601 120 HOH HOH . J 5 HOH A 102 602 56 HOH HOH . J 5 HOH A 103 603 135 HOH HOH . J 5 HOH A 104 604 30 HOH HOH . J 5 HOH A 105 605 119 HOH HOH . J 5 HOH A 106 606 94 HOH HOH . J 5 HOH A 107 607 46 HOH HOH . J 5 HOH A 108 608 77 HOH HOH . J 5 HOH A 109 609 37 HOH HOH . J 5 HOH A 110 610 117 HOH HOH . J 5 HOH A 111 611 145 HOH HOH . J 5 HOH A 112 612 6 HOH HOH . J 5 HOH A 113 613 48 HOH HOH . J 5 HOH A 114 614 110 HOH HOH . J 5 HOH A 115 615 41 HOH HOH . J 5 HOH A 116 616 25 HOH HOH . J 5 HOH A 117 617 70 HOH HOH . J 5 HOH A 118 618 34 HOH HOH . J 5 HOH A 119 619 73 HOH HOH . J 5 HOH A 120 620 27 HOH HOH . J 5 HOH A 121 621 7 HOH HOH . J 5 HOH A 122 622 2 HOH HOH . J 5 HOH A 123 623 65 HOH HOH . J 5 HOH A 124 624 44 HOH HOH . J 5 HOH A 125 625 13 HOH HOH . J 5 HOH A 126 626 112 HOH HOH . J 5 HOH A 127 627 78 HOH HOH . J 5 HOH A 128 628 149 HOH HOH . J 5 HOH A 129 629 39 HOH HOH . J 5 HOH A 130 630 121 HOH HOH . J 5 HOH A 131 631 91 HOH HOH . J 5 HOH A 132 632 132 HOH HOH . J 5 HOH A 133 633 147 HOH HOH . J 5 HOH A 134 634 122 HOH HOH . J 5 HOH A 135 635 85 HOH HOH . J 5 HOH A 136 636 72 HOH HOH . J 5 HOH A 137 637 137 HOH HOH . J 5 HOH A 138 638 103 HOH HOH . J 5 HOH A 139 639 64 HOH HOH . J 5 HOH A 140 640 134 HOH HOH . J 5 HOH A 141 641 80 HOH HOH . J 5 HOH A 142 642 93 HOH HOH . J 5 HOH A 143 643 33 HOH HOH . J 5 HOH A 144 644 140 HOH HOH . J 5 HOH A 145 645 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 13.683 -0.144 -26.198 1 57.16 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 12.258 -0.491 -26.553 1 55.07 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 14.116 -1.237 -24.851 1 51.41 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 14.697 -0.901 -27.446 1 56.7 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #