data_5RZM
#
_model_server_result.job_id            8CH9PH60KJXZe2bT3zG-Pw 
_model_server_result.datetime_utc      '2025-01-10 08:44:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rzm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5RZM 
#
_exptl.entry_id    5RZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.216 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(dimethylamino)methyl]benzonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RZM 
_cell.length_a            38.58 
_cell.length_b            77.35 
_cell.length_c            99.88 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H12 N2' 
_chem_comp.formula_weight    160.216 
_chem_comp.id                WHY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(dimethylamino)methyl]benzonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N WHY sing 394 n n 
C1 N WHY sing 395 n n 
N C2 WHY sing 396 n n 
C2 C3 WHY sing 397 n n 
C3 C4 WHY sing 398 n y 
C4 C5 WHY doub 399 n y 
C5 C6 WHY sing 400 n y 
C6 C7 WHY sing 401 n n 
C7 N1 WHY trip 402 n n 
C8 C6 WHY doub 403 n y 
C9 C8 WHY sing 404 n y 
C3 C9 WHY doub 405 n y 
C4 H8 WHY sing 406 n n 
C5 H9 WHY sing 407 n n 
C8 H10 WHY sing 408 n n 
C H1 WHY sing 409 n n 
C H2 WHY sing 410 n n 
C H WHY sing 411 n n 
C1 H4 WHY sing 412 n n 
C1 H3 WHY sing 413 n n 
C1 H5 WHY sing 414 n n 
C2 H7 WHY sing 415 n n 
C2 H6 WHY sing 416 n n 
C9 H11 WHY sing 417 n n 
#
_atom_sites.entry_id                     5RZM 
_atom_sites.fract_transf_matrix[1][1]    0.02592 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010012 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WHY A 1 401 401 WHY LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 4 EDO A 1 404 1 EDO EDO . 
F 4 EDO A 1 405 2 EDO EDO . 
G 4 EDO A 1 406 3 EDO EDO . 
H 4 EDO A 1 407 4 EDO EDO . 
I 4 EDO A 1 408 5 EDO EDO . 
J 4 EDO A 1 409 6 EDO EDO . 
K 4 EDO A 1 410 7 EDO EDO . 
L 5 HOH A 1 501 113 HOH HOH . 
L 5 HOH A 2 502 26 HOH HOH . 
L 5 HOH A 3 503 124 HOH HOH . 
L 5 HOH A 4 504 90 HOH HOH . 
L 5 HOH A 5 505 96 HOH HOH . 
L 5 HOH A 6 506 133 HOH HOH . 
L 5 HOH A 7 507 106 HOH HOH . 
L 5 HOH A 8 508 108 HOH HOH . 
L 5 HOH A 9 509 148 HOH HOH . 
L 5 HOH A 10 510 59 HOH HOH . 
L 5 HOH A 11 511 74 HOH HOH . 
L 5 HOH A 12 512 63 HOH HOH . 
L 5 HOH A 13 513 153 HOH HOH . 
L 5 HOH A 14 514 67 HOH HOH . 
L 5 HOH A 15 515 54 HOH HOH . 
L 5 HOH A 16 516 95 HOH HOH . 
L 5 HOH A 17 517 42 HOH HOH . 
L 5 HOH A 18 518 105 HOH HOH . 
L 5 HOH A 19 519 28 HOH HOH . 
L 5 HOH A 20 520 97 HOH HOH . 
L 5 HOH A 21 521 129 HOH HOH . 
L 5 HOH A 22 522 5 HOH HOH . 
L 5 HOH A 23 523 36 HOH HOH . 
L 5 HOH A 24 524 84 HOH HOH . 
L 5 HOH A 25 525 22 HOH HOH . 
L 5 HOH A 26 526 116 HOH HOH . 
L 5 HOH A 27 527 143 HOH HOH . 
L 5 HOH A 28 528 120 HOH HOH . 
L 5 HOH A 29 529 1 HOH HOH . 
L 5 HOH A 30 530 82 HOH HOH . 
L 5 HOH A 31 531 50 HOH HOH . 
L 5 HOH A 32 532 10 HOH HOH . 
L 5 HOH A 33 533 138 HOH HOH . 
L 5 HOH A 34 534 32 HOH HOH . 
L 5 HOH A 35 535 9 HOH HOH . 
L 5 HOH A 36 536 61 HOH HOH . 
L 5 HOH A 37 537 151 HOH HOH . 
L 5 HOH A 38 538 4 HOH HOH . 
L 5 HOH A 39 539 101 HOH HOH . 
L 5 HOH A 40 540 109 HOH HOH . 
L 5 HOH A 41 541 52 HOH HOH . 
L 5 HOH A 42 542 8 HOH HOH . 
L 5 HOH A 43 543 88 HOH HOH . 
L 5 HOH A 44 544 45 HOH HOH . 
L 5 HOH A 45 545 98 HOH HOH . 
L 5 HOH A 46 546 31 HOH HOH . 
L 5 HOH A 47 547 68 HOH HOH . 
L 5 HOH A 48 548 100 HOH HOH . 
L 5 HOH A 49 549 146 HOH HOH . 
L 5 HOH A 50 550 58 HOH HOH . 
L 5 HOH A 51 551 150 HOH HOH . 
L 5 HOH A 52 552 87 HOH HOH . 
L 5 HOH A 53 553 43 HOH HOH . 
L 5 HOH A 54 554 55 HOH HOH . 
L 5 HOH A 55 555 76 HOH HOH . 
L 5 HOH A 56 556 139 HOH HOH . 
L 5 HOH A 57 557 57 HOH HOH . 
L 5 HOH A 58 558 60 HOH HOH . 
L 5 HOH A 59 559 123 HOH HOH . 
L 5 HOH A 60 560 86 HOH HOH . 
L 5 HOH A 61 561 18 HOH HOH . 
L 5 HOH A 62 562 75 HOH HOH . 
L 5 HOH A 63 563 16 HOH HOH . 
L 5 HOH A 64 564 20 HOH HOH . 
L 5 HOH A 65 565 53 HOH HOH . 
L 5 HOH A 66 566 115 HOH HOH . 
L 5 HOH A 67 567 19 HOH HOH . 
L 5 HOH A 68 568 79 HOH HOH . 
L 5 HOH A 69 569 69 HOH HOH . 
L 5 HOH A 70 570 11 HOH HOH . 
L 5 HOH A 71 571 29 HOH HOH . 
L 5 HOH A 72 572 102 HOH HOH . 
L 5 HOH A 73 573 13 HOH HOH . 
L 5 HOH A 74 574 51 HOH HOH . 
L 5 HOH A 75 575 119 HOH HOH . 
L 5 HOH A 76 576 23 HOH HOH . 
L 5 HOH A 77 577 17 HOH HOH . 
L 5 HOH A 78 578 66 HOH HOH . 
L 5 HOH A 79 579 21 HOH HOH . 
L 5 HOH A 80 580 89 HOH HOH . 
L 5 HOH A 81 581 24 HOH HOH . 
L 5 HOH A 82 582 3 HOH HOH . 
L 5 HOH A 83 583 130 HOH HOH . 
L 5 HOH A 84 584 144 HOH HOH . 
L 5 HOH A 85 585 118 HOH HOH . 
L 5 HOH A 86 586 99 HOH HOH . 
L 5 HOH A 87 587 47 HOH HOH . 
L 5 HOH A 88 588 71 HOH HOH . 
L 5 HOH A 89 589 128 HOH HOH . 
L 5 HOH A 90 590 136 HOH HOH . 
L 5 HOH A 91 591 14 HOH HOH . 
L 5 HOH A 92 592 92 HOH HOH . 
L 5 HOH A 93 593 114 HOH HOH . 
L 5 HOH A 94 594 56 HOH HOH . 
L 5 HOH A 95 595 40 HOH HOH . 
L 5 HOH A 96 596 46 HOH HOH . 
L 5 HOH A 97 597 107 HOH HOH . 
L 5 HOH A 98 598 38 HOH HOH . 
L 5 HOH A 99 599 35 HOH HOH . 
L 5 HOH A 100 600 117 HOH HOH . 
L 5 HOH A 101 601 12 HOH HOH . 
L 5 HOH A 102 602 30 HOH HOH . 
L 5 HOH A 103 603 127 HOH HOH . 
L 5 HOH A 104 604 141 HOH HOH . 
L 5 HOH A 105 605 41 HOH HOH . 
L 5 HOH A 106 606 154 HOH HOH . 
L 5 HOH A 107 607 94 HOH HOH . 
L 5 HOH A 108 608 111 HOH HOH . 
L 5 HOH A 109 609 37 HOH HOH . 
L 5 HOH A 110 610 135 HOH HOH . 
L 5 HOH A 111 611 110 HOH HOH . 
L 5 HOH A 112 612 142 HOH HOH . 
L 5 HOH A 113 613 104 HOH HOH . 
L 5 HOH A 114 614 77 HOH HOH . 
L 5 HOH A 115 615 7 HOH HOH . 
L 5 HOH A 116 616 34 HOH HOH . 
L 5 HOH A 117 617 121 HOH HOH . 
L 5 HOH A 118 618 73 HOH HOH . 
L 5 HOH A 119 619 6 HOH HOH . 
L 5 HOH A 120 620 70 HOH HOH . 
L 5 HOH A 121 621 145 HOH HOH . 
L 5 HOH A 122 622 44 HOH HOH . 
L 5 HOH A 123 623 2 HOH HOH . 
L 5 HOH A 124 624 91 HOH HOH . 
L 5 HOH A 125 625 25 HOH HOH . 
L 5 HOH A 126 626 39 HOH HOH . 
L 5 HOH A 127 627 149 HOH HOH . 
L 5 HOH A 128 628 27 HOH HOH . 
L 5 HOH A 129 629 125 HOH HOH . 
L 5 HOH A 130 630 65 HOH HOH . 
L 5 HOH A 131 631 78 HOH HOH . 
L 5 HOH A 132 632 112 HOH HOH . 
L 5 HOH A 133 633 72 HOH HOH . 
L 5 HOH A 134 634 147 HOH HOH . 
L 5 HOH A 135 635 85 HOH HOH . 
L 5 HOH A 136 636 132 HOH HOH . 
L 5 HOH A 137 637 122 HOH HOH . 
L 5 HOH A 138 638 103 HOH HOH . 
L 5 HOH A 139 639 137 HOH HOH . 
L 5 HOH A 140 640 134 HOH HOH . 
L 5 HOH A 141 641 64 HOH HOH . 
L 5 HOH A 142 642 83 HOH HOH . 
L 5 HOH A 143 643 93 HOH HOH . 
L 5 HOH A 144 644 80 HOH HOH . 
L 5 HOH A 145 645 62 HOH HOH . 
L 5 HOH A 146 646 152 HOH HOH . 
L 5 HOH A 147 647 33 HOH HOH . 
L 5 HOH A 148 648 48 HOH HOH . 
L 5 HOH A 149 649 126 HOH HOH . 
L 5 HOH A 150 650 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 WHY . . . B 2 15.374 5.232 -19.218 0.64 30.61 ? N1 WHY 401 A 1 
HETATM 2 C C4 WHY . . . B 2 18.678 7.345 -22.014 0.64 31.75 ? C4 WHY 401 A 1 
HETATM 3 C C5 WHY . . . B 2 17.529 6.845 -21.428 0.64 31.14 ? C5 WHY 401 A 1 
HETATM 4 C C6 WHY . . . B 2 17.611 5.896 -20.392 0.64 32.01 ? C6 WHY 401 A 1 
HETATM 5 C C7 WHY . . . B 2 16.398 5.483 -19.717 0.64 33.22 ? C7 WHY 401 A 1 
HETATM 6 C C8 WHY . . . B 2 18.862 5.421 -19.965 0.64 32.55 ? C8 WHY 401 A 1 
HETATM 7 N N WHY . . . B 2 22.016 6.632 -22.99 0.64 39.67 ? N WHY 401 A 1 
HETATM 8 C C WHY . . . B 2 22.882 7.456 -23.912 0.64 40.29 ? C WHY 401 A 1 
HETATM 9 C C1 WHY . . . B 2 21.271 5.551 -23.727 0.64 40.36 ? C1 WHY 401 A 1 
HETATM 10 C C2 WHY . . . B 2 21.156 7.557 -22.181 0.64 37.12 ? C2 WHY 401 A 1 
HETATM 11 C C3 WHY . . . B 2 19.931 6.903 -21.582 0.64 34.17 ? C3 WHY 401 A 1 
HETATM 12 C C9 WHY . . . B 2 20.032 5.927 -20.565 0.64 32.69 ? C9 WHY 401 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#