data_5RZO
#
_model_server_result.job_id            S156Z-9e4EnLZEe8hCNxsw 
_model_server_result.datetime_utc      '2024-11-07 08:33:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rzo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    5RZO 
#
_exptl.entry_id    5RZO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5RZO 
_cell.length_a            38.498 
_cell.length_b            77.528 
_cell.length_c            99.83 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RZO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     5RZO 
_atom_sites.fract_transf_matrix[1][1]    0.025975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WJ4 A 1 401 401 WJ4 LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 4 EDO A 1 404 1 EDO EDO . 
F 4 EDO A 1 405 4 EDO EDO . 
G 4 EDO A 1 406 5 EDO EDO . 
H 5 HOH A 1 501 127 HOH HOH . 
H 5 HOH A 2 502 113 HOH HOH . 
H 5 HOH A 3 503 133 HOH HOH . 
H 5 HOH A 4 504 96 HOH HOH . 
H 5 HOH A 5 505 124 HOH HOH . 
H 5 HOH A 6 506 129 HOH HOH . 
H 5 HOH A 7 507 10 HOH HOH . 
H 5 HOH A 8 508 51 HOH HOH . 
H 5 HOH A 9 509 54 HOH HOH . 
H 5 HOH A 10 510 148 HOH HOH . 
H 5 HOH A 11 511 1 HOH HOH . 
H 5 HOH A 12 512 67 HOH HOH . 
H 5 HOH A 13 513 42 HOH HOH . 
H 5 HOH A 14 514 9 HOH HOH . 
H 5 HOH A 15 515 120 HOH HOH . 
H 5 HOH A 16 516 138 HOH HOH . 
H 5 HOH A 17 517 26 HOH HOH . 
H 5 HOH A 18 518 43 HOH HOH . 
H 5 HOH A 19 519 63 HOH HOH . 
H 5 HOH A 20 520 101 HOH HOH . 
H 5 HOH A 21 521 109 HOH HOH . 
H 5 HOH A 22 522 5 HOH HOH . 
H 5 HOH A 23 523 45 HOH HOH . 
H 5 HOH A 24 524 36 HOH HOH . 
H 5 HOH A 25 525 28 HOH HOH . 
H 5 HOH A 26 526 95 HOH HOH . 
H 5 HOH A 27 527 97 HOH HOH . 
H 5 HOH A 28 528 75 HOH HOH . 
H 5 HOH A 29 529 53 HOH HOH . 
H 5 HOH A 30 530 57 HOH HOH . 
H 5 HOH A 31 531 105 HOH HOH . 
H 5 HOH A 32 532 98 HOH HOH . 
H 5 HOH A 33 533 88 HOH HOH . 
H 5 HOH A 34 534 22 HOH HOH . 
H 5 HOH A 35 535 47 HOH HOH . 
H 5 HOH A 36 536 111 HOH HOH . 
H 5 HOH A 37 537 146 HOH HOH . 
H 5 HOH A 38 538 116 HOH HOH . 
H 5 HOH A 39 539 32 HOH HOH . 
H 5 HOH A 40 540 89 HOH HOH . 
H 5 HOH A 41 541 92 HOH HOH . 
H 5 HOH A 42 542 8 HOH HOH . 
H 5 HOH A 43 543 79 HOH HOH . 
H 5 HOH A 44 544 114 HOH HOH . 
H 5 HOH A 45 545 82 HOH HOH . 
H 5 HOH A 46 546 142 HOH HOH . 
H 5 HOH A 47 547 86 HOH HOH . 
H 5 HOH A 48 548 50 HOH HOH . 
H 5 HOH A 49 549 16 HOH HOH . 
H 5 HOH A 50 550 115 HOH HOH . 
H 5 HOH A 51 551 100 HOH HOH . 
H 5 HOH A 52 552 4 HOH HOH . 
H 5 HOH A 53 553 106 HOH HOH . 
H 5 HOH A 54 554 150 HOH HOH . 
H 5 HOH A 55 555 117 HOH HOH . 
H 5 HOH A 56 556 55 HOH HOH . 
H 5 HOH A 57 557 84 HOH HOH . 
H 5 HOH A 58 558 61 HOH HOH . 
H 5 HOH A 59 559 71 HOH HOH . 
H 5 HOH A 60 560 112 HOH HOH . 
H 5 HOH A 61 561 52 HOH HOH . 
H 5 HOH A 62 562 99 HOH HOH . 
H 5 HOH A 63 563 107 HOH HOH . 
H 5 HOH A 64 564 60 HOH HOH . 
H 5 HOH A 65 565 76 HOH HOH . 
H 5 HOH A 66 566 69 HOH HOH . 
H 5 HOH A 67 567 58 HOH HOH . 
H 5 HOH A 68 568 108 HOH HOH . 
H 5 HOH A 69 569 11 HOH HOH . 
H 5 HOH A 70 570 143 HOH HOH . 
H 5 HOH A 71 571 21 HOH HOH . 
H 5 HOH A 72 572 3 HOH HOH . 
H 5 HOH A 73 573 59 HOH HOH . 
H 5 HOH A 74 574 18 HOH HOH . 
H 5 HOH A 75 575 17 HOH HOH . 
H 5 HOH A 76 576 68 HOH HOH . 
H 5 HOH A 77 577 30 HOH HOH . 
H 5 HOH A 78 578 15 HOH HOH . 
H 5 HOH A 79 579 40 HOH HOH . 
H 5 HOH A 80 580 94 HOH HOH . 
H 5 HOH A 81 581 66 HOH HOH . 
H 5 HOH A 82 582 31 HOH HOH . 
H 5 HOH A 83 583 83 HOH HOH . 
H 5 HOH A 84 584 12 HOH HOH . 
H 5 HOH A 85 585 29 HOH HOH . 
H 5 HOH A 86 586 24 HOH HOH . 
H 5 HOH A 87 587 90 HOH HOH . 
H 5 HOH A 88 588 23 HOH HOH . 
H 5 HOH A 89 589 81 HOH HOH . 
H 5 HOH A 90 590 14 HOH HOH . 
H 5 HOH A 91 591 128 HOH HOH . 
H 5 HOH A 92 592 46 HOH HOH . 
H 5 HOH A 93 593 77 HOH HOH . 
H 5 HOH A 94 594 6 HOH HOH . 
H 5 HOH A 95 595 91 HOH HOH . 
H 5 HOH A 96 596 38 HOH HOH . 
H 5 HOH A 97 597 7 HOH HOH . 
H 5 HOH A 98 598 20 HOH HOH . 
H 5 HOH A 99 599 34 HOH HOH . 
H 5 HOH A 100 600 13 HOH HOH . 
H 5 HOH A 101 601 37 HOH HOH . 
H 5 HOH A 102 602 104 HOH HOH . 
H 5 HOH A 103 603 41 HOH HOH . 
H 5 HOH A 104 604 136 HOH HOH . 
H 5 HOH A 105 605 125 HOH HOH . 
H 5 HOH A 106 606 44 HOH HOH . 
H 5 HOH A 107 607 56 HOH HOH . 
H 5 HOH A 108 608 130 HOH HOH . 
H 5 HOH A 109 609 110 HOH HOH . 
H 5 HOH A 110 610 19 HOH HOH . 
H 5 HOH A 111 611 122 HOH HOH . 
H 5 HOH A 112 612 74 HOH HOH . 
H 5 HOH A 113 613 119 HOH HOH . 
H 5 HOH A 114 614 70 HOH HOH . 
H 5 HOH A 115 615 141 HOH HOH . 
H 5 HOH A 116 616 139 HOH HOH . 
H 5 HOH A 117 617 39 HOH HOH . 
H 5 HOH A 118 618 65 HOH HOH . 
H 5 HOH A 119 619 102 HOH HOH . 
H 5 HOH A 120 620 73 HOH HOH . 
H 5 HOH A 121 621 87 HOH HOH . 
H 5 HOH A 122 622 35 HOH HOH . 
H 5 HOH A 123 623 118 HOH HOH . 
H 5 HOH A 124 624 2 HOH HOH . 
H 5 HOH A 125 625 25 HOH HOH . 
H 5 HOH A 126 626 123 HOH HOH . 
H 5 HOH A 127 627 27 HOH HOH . 
H 5 HOH A 128 628 149 HOH HOH . 
H 5 HOH A 129 629 145 HOH HOH . 
H 5 HOH A 130 630 147 HOH HOH . 
H 5 HOH A 131 631 72 HOH HOH . 
H 5 HOH A 132 632 121 HOH HOH . 
H 5 HOH A 133 633 135 HOH HOH . 
H 5 HOH A 134 634 78 HOH HOH . 
H 5 HOH A 135 635 132 HOH HOH . 
H 5 HOH A 136 636 144 HOH HOH . 
H 5 HOH A 137 637 85 HOH HOH . 
H 5 HOH A 138 638 137 HOH HOH . 
H 5 HOH A 139 639 64 HOH HOH . 
H 5 HOH A 140 640 134 HOH HOH . 
H 5 HOH A 141 641 80 HOH HOH . 
H 5 HOH A 142 642 126 HOH HOH . 
H 5 HOH A 143 643 62 HOH HOH . 
H 5 HOH A 144 644 103 HOH HOH . 
H 5 HOH A 145 645 93 HOH HOH . 
H 5 HOH A 146 646 33 HOH HOH . 
H 5 HOH A 147 647 48 HOH HOH . 
H 5 HOH A 148 648 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 14.167 -6.266 -33.446 1 49.64 ? C1 EDO 405 A 1 
HETATM 2 O O1 EDO . . . F 4 14.867 -6.929 -34.481 1 48.01 ? O1 EDO 405 A 1 
HETATM 3 C C2 EDO . . . F 4 12.689 -6.398 -33.617 1 51.09 ? C2 EDO 405 A 1 
HETATM 4 O O2 EDO . . . F 4 11.926 -6.924 -32.516 1 47.8 ? O2 EDO 405 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#