data_5RZP # _model_server_result.job_id dUABT9KWJ76nexjnVohP5Q _model_server_result.datetime_utc '2024-11-26 17:54:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5RZP # _exptl.entry_id 5RZP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.214 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(2-azanyl-2-oxidanylidene-ethyl)-4-methoxy-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RZP _cell.length_a 38.53 _cell.length_b 77.47 _cell.length_c 99.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N2 O3' _chem_comp.formula_weight 208.214 _chem_comp.id ONQ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(2-azanyl-2-oxidanylidene-ethyl)-4-methoxy-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ONQ sing 255 n n O C1 ONQ sing 256 n n C1 C2 ONQ doub 257 n y C1 C6 ONQ sing 258 n y C2 C3 ONQ sing 259 n y C6 C5 ONQ doub 260 n y C3 C4 ONQ doub 261 n y C5 C4 ONQ sing 262 n y C4 C7 ONQ sing 263 n n C7 N ONQ sing 264 n n C7 O2 ONQ doub 265 n n N C8 ONQ sing 266 n n O1 C9 ONQ doub 267 n n C8 C9 ONQ sing 268 n n C9 N1 ONQ sing 269 n n N1 H11 ONQ sing 270 n n N1 H10 ONQ sing 271 n n C5 H5 ONQ sing 272 n n C6 H6 ONQ sing 273 n n C8 H8 ONQ sing 274 n n C8 H9 ONQ sing 275 n n N H7 ONQ sing 276 n n C3 H4 ONQ sing 277 n n C2 H3 ONQ sing 278 n n C H1 ONQ sing 279 n n C H2 ONQ sing 280 n n C H ONQ sing 281 n n # _atom_sites.entry_id 5RZP _atom_sites.fract_transf_matrix[1][1] 0.025954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ONQ A 1 401 401 ONQ LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 4 EDO A 1 404 1 EDO EDO . F 4 EDO A 1 405 2 EDO EDO . G 4 EDO A 1 406 3 EDO EDO . H 4 EDO A 1 407 4 EDO EDO . I 4 EDO A 1 408 5 EDO EDO . J 4 EDO A 1 409 6 EDO EDO . K 5 HOH A 1 501 83 HOH HOH . K 5 HOH A 2 502 124 HOH HOH . K 5 HOH A 3 503 1 HOH HOH . K 5 HOH A 4 504 96 HOH HOH . K 5 HOH A 5 505 113 HOH HOH . K 5 HOH A 6 506 26 HOH HOH . K 5 HOH A 7 507 129 HOH HOH . K 5 HOH A 8 508 90 HOH HOH . K 5 HOH A 9 509 148 HOH HOH . K 5 HOH A 10 510 133 HOH HOH . K 5 HOH A 11 511 108 HOH HOH . K 5 HOH A 12 512 95 HOH HOH . K 5 HOH A 13 513 151 HOH HOH . K 5 HOH A 14 514 43 HOH HOH . K 5 HOH A 15 515 50 HOH HOH . K 5 HOH A 16 516 74 HOH HOH . K 5 HOH A 17 517 63 HOH HOH . K 5 HOH A 18 518 67 HOH HOH . K 5 HOH A 19 519 97 HOH HOH . K 5 HOH A 20 520 59 HOH HOH . K 5 HOH A 21 521 45 HOH HOH . K 5 HOH A 22 522 76 HOH HOH . K 5 HOH A 23 523 115 HOH HOH . K 5 HOH A 24 524 116 HOH HOH . K 5 HOH A 25 525 28 HOH HOH . K 5 HOH A 26 526 75 HOH HOH . K 5 HOH A 27 527 5 HOH HOH . K 5 HOH A 28 528 139 HOH HOH . K 5 HOH A 29 529 109 HOH HOH . K 5 HOH A 30 530 22 HOH HOH . K 5 HOH A 31 531 42 HOH HOH . K 5 HOH A 32 532 10 HOH HOH . K 5 HOH A 33 533 61 HOH HOH . K 5 HOH A 34 534 36 HOH HOH . K 5 HOH A 35 535 105 HOH HOH . K 5 HOH A 36 536 9 HOH HOH . K 5 HOH A 37 537 146 HOH HOH . K 5 HOH A 38 538 82 HOH HOH . K 5 HOH A 39 539 11 HOH HOH . K 5 HOH A 40 540 106 HOH HOH . K 5 HOH A 41 541 31 HOH HOH . K 5 HOH A 42 542 143 HOH HOH . K 5 HOH A 43 543 88 HOH HOH . K 5 HOH A 44 544 154 HOH HOH . K 5 HOH A 45 545 150 HOH HOH . K 5 HOH A 46 546 58 HOH HOH . K 5 HOH A 47 547 57 HOH HOH . K 5 HOH A 48 548 87 HOH HOH . K 5 HOH A 49 549 138 HOH HOH . K 5 HOH A 50 550 14 HOH HOH . K 5 HOH A 51 551 101 HOH HOH . K 5 HOH A 52 552 123 HOH HOH . K 5 HOH A 53 553 92 HOH HOH . K 5 HOH A 54 554 51 HOH HOH . K 5 HOH A 55 555 54 HOH HOH . K 5 HOH A 56 556 18 HOH HOH . K 5 HOH A 57 557 69 HOH HOH . K 5 HOH A 58 558 100 HOH HOH . K 5 HOH A 59 559 4 HOH HOH . K 5 HOH A 60 560 8 HOH HOH . K 5 HOH A 61 561 60 HOH HOH . K 5 HOH A 62 562 84 HOH HOH . K 5 HOH A 63 563 118 HOH HOH . K 5 HOH A 64 564 86 HOH HOH . K 5 HOH A 65 565 52 HOH HOH . K 5 HOH A 66 566 32 HOH HOH . K 5 HOH A 67 567 114 HOH HOH . K 5 HOH A 68 568 98 HOH HOH . K 5 HOH A 69 569 3 HOH HOH . K 5 HOH A 70 570 111 HOH HOH . K 5 HOH A 71 571 68 HOH HOH . K 5 HOH A 72 572 16 HOH HOH . K 5 HOH A 73 573 21 HOH HOH . K 5 HOH A 74 574 128 HOH HOH . K 5 HOH A 75 575 79 HOH HOH . K 5 HOH A 76 576 89 HOH HOH . K 5 HOH A 77 577 23 HOH HOH . K 5 HOH A 78 578 53 HOH HOH . K 5 HOH A 79 579 127 HOH HOH . K 5 HOH A 80 580 40 HOH HOH . K 5 HOH A 81 581 17 HOH HOH . K 5 HOH A 82 582 66 HOH HOH . K 5 HOH A 83 583 99 HOH HOH . K 5 HOH A 84 584 20 HOH HOH . K 5 HOH A 85 585 135 HOH HOH . K 5 HOH A 86 586 35 HOH HOH . K 5 HOH A 87 587 119 HOH HOH . K 5 HOH A 88 588 24 HOH HOH . K 5 HOH A 89 589 29 HOH HOH . K 5 HOH A 90 590 56 HOH HOH . K 5 HOH A 91 591 153 HOH HOH . K 5 HOH A 92 592 141 HOH HOH . K 5 HOH A 93 593 47 HOH HOH . K 5 HOH A 94 594 117 HOH HOH . K 5 HOH A 95 595 12 HOH HOH . K 5 HOH A 96 596 147 HOH HOH . K 5 HOH A 97 597 94 HOH HOH . K 5 HOH A 98 598 30 HOH HOH . K 5 HOH A 99 599 46 HOH HOH . K 5 HOH A 100 600 136 HOH HOH . K 5 HOH A 101 601 144 HOH HOH . K 5 HOH A 102 602 120 HOH HOH . K 5 HOH A 103 603 19 HOH HOH . K 5 HOH A 104 604 38 HOH HOH . K 5 HOH A 105 605 107 HOH HOH . K 5 HOH A 106 606 104 HOH HOH . K 5 HOH A 107 607 130 HOH HOH . K 5 HOH A 108 608 71 HOH HOH . K 5 HOH A 109 609 41 HOH HOH . K 5 HOH A 110 610 34 HOH HOH . K 5 HOH A 111 611 6 HOH HOH . K 5 HOH A 112 612 2 HOH HOH . K 5 HOH A 113 613 91 HOH HOH . K 5 HOH A 114 614 44 HOH HOH . K 5 HOH A 115 615 37 HOH HOH . K 5 HOH A 116 616 25 HOH HOH . K 5 HOH A 117 617 125 HOH HOH . K 5 HOH A 118 618 70 HOH HOH . K 5 HOH A 119 619 7 HOH HOH . K 5 HOH A 120 620 121 HOH HOH . K 5 HOH A 121 621 110 HOH HOH . K 5 HOH A 122 622 142 HOH HOH . K 5 HOH A 123 623 39 HOH HOH . K 5 HOH A 124 624 73 HOH HOH . K 5 HOH A 125 625 77 HOH HOH . K 5 HOH A 126 626 27 HOH HOH . K 5 HOH A 127 627 65 HOH HOH . K 5 HOH A 128 628 112 HOH HOH . K 5 HOH A 129 629 78 HOH HOH . K 5 HOH A 130 630 152 HOH HOH . K 5 HOH A 131 631 85 HOH HOH . K 5 HOH A 132 632 149 HOH HOH . K 5 HOH A 133 633 13 HOH HOH . K 5 HOH A 134 634 145 HOH HOH . K 5 HOH A 135 635 132 HOH HOH . K 5 HOH A 136 636 122 HOH HOH . K 5 HOH A 137 637 72 HOH HOH . K 5 HOH A 138 638 134 HOH HOH . K 5 HOH A 139 639 137 HOH HOH . K 5 HOH A 140 640 103 HOH HOH . K 5 HOH A 141 641 64 HOH HOH . K 5 HOH A 142 642 93 HOH HOH . K 5 HOH A 143 643 80 HOH HOH . K 5 HOH A 144 644 62 HOH HOH . K 5 HOH A 145 645 33 HOH HOH . K 5 HOH A 146 646 48 HOH HOH . K 5 HOH A 147 647 81 HOH HOH . K 5 HOH A 148 648 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ONQ . . . B 2 3.301 12.263 -19.521 0.7 35.44 ? N1 ONQ 401 A 1 HETATM 2 C C4 ONQ . . . B 2 -1.555 9.984 -17.423 0.7 40.37 ? C4 ONQ 401 A 1 HETATM 3 C C5 ONQ . . . B 2 -2.544 10.116 -18.408 0.7 41.65 ? C5 ONQ 401 A 1 HETATM 4 C C6 ONQ . . . B 2 -3.876 9.854 -18.108 0.7 40.19 ? C6 ONQ 401 A 1 HETATM 5 C C7 ONQ . . . B 2 -0.124 10.262 -17.696 0.7 38.75 ? C7 ONQ 401 A 1 HETATM 6 C C8 ONQ . . . B 2 1.709 10.388 -19.376 0.7 37.5 ? C8 ONQ 401 A 1 HETATM 7 O O2 ONQ . . . B 2 0.638 10.59 -16.79 0.7 38.07 ? O2 ONQ 401 A 1 HETATM 8 N N ONQ . . . B 2 0.319 10.151 -19.004 0.7 38.67 ? N ONQ 401 A 1 HETATM 9 C C9 ONQ . . . B 2 1.986 11.873 -19.599 0.7 37.5 ? C9 ONQ 401 A 1 HETATM 10 O O1 ONQ . . . B 2 1.072 12.685 -19.846 0.7 38.52 ? O1 ONQ 401 A 1 HETATM 11 C C3 ONQ . . . B 2 -1.904 9.608 -16.117 0.7 40.8 ? C3 ONQ 401 A 1 HETATM 12 C C2 ONQ . . . B 2 -3.234 9.341 -15.813 0.7 40.81 ? C2 ONQ 401 A 1 HETATM 13 C C1 ONQ . . . B 2 -4.214 9.444 -16.828 0.7 39.21 ? C1 ONQ 401 A 1 HETATM 14 O O ONQ . . . B 2 -5.52 9.027 -16.565 0.7 42.52 ? O ONQ 401 A 1 HETATM 15 C C ONQ . . . B 2 -5.855 8.498 -15.285 0.7 39.63 ? C ONQ 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #