data_5S4M # _model_server_result.job_id hBX-oYslPRoD1_kLt-Ov4Q _model_server_result.datetime_utc '2024-11-25 01:38:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":501}' # _entry.id 5S4M # _exptl.entry_id 5S4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5S4M _cell.length_a 104.67 _cell.length_b 157.87 _cell.length_c 179.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc10 H MG MG . A MG 502 1_555 Y O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc11 H MG MG . A MG 502 1_555 Y O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc12 H MG MG . A MG 502 1_555 Y O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc13 H MG MG . A MG 502 1_555 Y O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc14 I CA CA . A CA 503 1_555 Y O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc15 J CA CA . A CA 504 1_555 Y O HOH . A HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc16 B OE1 GLN 11 B GLN 11 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc17 B OE1 GLU 111 B GLU 113 1_555 N CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc18 L O1A GDP . B GDP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc19 M MG MG . B MG 502 1_555 Z O HOH . B HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc20 M MG MG . B MG 502 1_555 Z O HOH . B HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc21 M MG MG . B MG 502 1_555 Z O HOH . B HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc22 M MG MG . B MG 502 1_555 AA O HOH . C HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc23 N CA CA . B CA 503 4_455 C OE1 GLU 284 C GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc24 C OD1 ASP 39 C ASP 39 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc25 C OD2 ASP 39 C ASP 39 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc26 C O THR 41 C THR 41 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc27 C OG1 THR 41 C THR 41 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc28 C O GLY 44 C GLY 44 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc29 C OE1 GLU 55 C GLU 55 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc30 C OE2 GLU 55 C GLU 55 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc31 Q O1G GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc32 Q O1B GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc33 R MG MG . C MG 502 1_555 AA O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc34 R MG MG . C MG 502 1_555 AA O HOH . C HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc35 R MG MG . C MG 502 1_555 AA O HOH . C HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc36 R MG MG . C MG 502 1_555 AA O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc37 S CA CA . C CA 503 1_555 AA O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc38 D OE1 GLN 11 D GLN 11 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc39 T O1A GDP . D GDP 501 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc40 U MG MG . D MG 502 1_555 BA O HOH . D HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc41 F OE1 GLU 331 F GLU 331 1_555 X MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc42 F OE2 GLU 331 F GLU 331 1_555 X MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc43 F OD1 ASN 333 F ASN 333 1_555 X MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc44 W O3G ACP . F ACP 401 1_555 X MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc45 W O1B ACP . F ACP 401 1_555 X MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 134 n n PB O2B GDP sing 135 n n PB O3B GDP sing 136 n n PB O3A GDP sing 137 n n O2B HOB2 GDP sing 138 n n O3B HOB3 GDP sing 139 n n O3A PA GDP sing 140 n n PA O1A GDP doub 141 n n PA O2A GDP sing 142 n n PA O5' GDP sing 143 n n O2A HOA2 GDP sing 144 n n O5' C5' GDP sing 145 n n C5' C4' GDP sing 146 n n C5' H5' GDP sing 147 n n C5' "H5''" GDP sing 148 n n C4' O4' GDP sing 149 n n C4' C3' GDP sing 150 n n C4' H4' GDP sing 151 n n O4' C1' GDP sing 152 n n C3' O3' GDP sing 153 n n C3' C2' GDP sing 154 n n C3' H3' GDP sing 155 n n O3' HO3' GDP sing 156 n n C2' O2' GDP sing 157 n n C2' C1' GDP sing 158 n n C2' H2' GDP sing 159 n n O2' HO2' GDP sing 160 n n C1' N9 GDP sing 161 n n C1' H1' GDP sing 162 n n N9 C8 GDP sing 163 n y N9 C4 GDP sing 164 n y C8 N7 GDP doub 165 n y C8 H8 GDP sing 166 n n N7 C5 GDP sing 167 n y C5 C6 GDP sing 168 n n C5 C4 GDP doub 169 n y C6 O6 GDP doub 170 n n C6 N1 GDP sing 171 n n N1 C2 GDP sing 172 n n N1 HN1 GDP sing 173 n n C2 N2 GDP sing 174 n n C2 N3 GDP doub 175 n n N2 HN21 GDP sing 176 n n N2 HN22 GDP sing 177 n n N3 C4 GDP sing 178 n n # _atom_sites.entry_id 5S4M _atom_sites.fract_transf_matrix[1][1] 0.009554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 7 CA A 1 504 504 CA CA . K 8 WV4 A 1 505 3 WV4 DRG . L 9 GDP B 1 501 501 GDP GDP . M 6 MG B 1 502 502 MG MG . N 7 CA B 1 503 503 CA CA . O 10 MES B 1 504 504 MES MES . P 8 WV4 B 1 505 1 WV4 DRG . Q 5 GTP C 1 501 501 GTP GTP . R 6 MG C 1 502 502 MG MG . S 7 CA C 1 503 503 CA CA . T 9 GDP D 1 501 501 GDP GDP . U 6 MG D 1 502 502 MG MG . V 8 WV4 D 1 503 2 WV4 DRG . W 11 ACP F 1 401 401 ACP ACP . X 6 MG F 1 402 402 MG MG . Y 12 HOH A 1 601 79 HOH HOH . Y 12 HOH A 2 602 35 HOH HOH . Y 12 HOH A 3 603 9 HOH HOH . Y 12 HOH A 4 604 25 HOH HOH . Y 12 HOH A 5 605 29 HOH HOH . Y 12 HOH A 6 606 104 HOH HOH . Y 12 HOH A 7 607 202 HOH HOH . Y 12 HOH A 8 608 140 HOH HOH . Y 12 HOH A 9 609 40 HOH HOH . Y 12 HOH A 10 610 65 HOH HOH . Y 12 HOH A 11 611 22 HOH HOH . Y 12 HOH A 12 612 60 HOH HOH . Y 12 HOH A 13 613 167 HOH HOH . Y 12 HOH A 14 614 135 HOH HOH . Y 12 HOH A 15 615 157 HOH HOH . Y 12 HOH A 16 616 52 HOH HOH . Y 12 HOH A 17 617 83 HOH HOH . Y 12 HOH A 18 618 47 HOH HOH . Y 12 HOH A 19 619 101 HOH HOH . Y 12 HOH A 20 620 42 HOH HOH . Y 12 HOH A 21 621 87 HOH HOH . Y 12 HOH A 22 622 123 HOH HOH . Y 12 HOH A 23 623 24 HOH HOH . Y 12 HOH A 24 624 228 HOH HOH . Y 12 HOH A 25 625 126 HOH HOH . Y 12 HOH A 26 626 88 HOH HOH . Y 12 HOH A 27 627 434 HOH HOH . Y 12 HOH A 28 628 95 HOH HOH . Y 12 HOH A 29 629 164 HOH HOH . Y 12 HOH A 30 630 78 HOH HOH . Y 12 HOH A 31 631 220 HOH HOH . Y 12 HOH A 32 632 173 HOH HOH . Y 12 HOH A 33 633 93 HOH HOH . Y 12 HOH A 34 634 227 HOH HOH . Y 12 HOH A 35 635 109 HOH HOH . Y 12 HOH A 36 636 36 HOH HOH . Y 12 HOH A 37 637 106 HOH HOH . Y 12 HOH A 38 638 152 HOH HOH . Y 12 HOH A 39 639 97 HOH HOH . Y 12 HOH A 40 640 198 HOH HOH . Y 12 HOH A 41 641 81 HOH HOH . Y 12 HOH A 42 642 208 HOH HOH . Y 12 HOH A 43 643 94 HOH HOH . Y 12 HOH A 44 644 180 HOH HOH . Y 12 HOH A 45 645 161 HOH HOH . Y 12 HOH A 46 646 108 HOH HOH . Y 12 HOH A 47 647 174 HOH HOH . Y 12 HOH A 48 648 257 HOH HOH . Y 12 HOH A 49 649 156 HOH HOH . Y 12 HOH A 50 650 1563 HOH HOH . Y 12 HOH A 51 651 107 HOH HOH . Y 12 HOH A 52 652 195 HOH HOH . Y 12 HOH A 53 653 258 HOH HOH . Y 12 HOH A 54 654 125 HOH HOH . Y 12 HOH A 55 655 263 HOH HOH . Y 12 HOH A 56 656 175 HOH HOH . Y 12 HOH A 57 657 118 HOH HOH . Y 12 HOH A 58 658 1562 HOH HOH . Y 12 HOH A 59 659 57 HOH HOH . Y 12 HOH A 60 660 151 HOH HOH . Y 12 HOH A 61 661 191 HOH HOH . Y 12 HOH A 62 662 273 HOH HOH . Y 12 HOH A 63 663 201 HOH HOH . Y 12 HOH A 64 664 213 HOH HOH . Y 12 HOH A 65 665 203 HOH HOH . Y 12 HOH A 66 666 290 HOH HOH . Y 12 HOH A 67 667 194 HOH HOH . Y 12 HOH A 68 668 43 HOH HOH . Y 12 HOH A 69 669 295 HOH HOH . Y 12 HOH A 70 670 141 HOH HOH . Y 12 HOH A 71 671 291 HOH HOH . Y 12 HOH A 72 672 297 HOH HOH . Z 12 HOH B 1 601 331 HOH HOH . Z 12 HOH B 2 602 316 HOH HOH . Z 12 HOH B 3 603 378 HOH HOH . Z 12 HOH B 4 604 550 HOH HOH . Z 12 HOH B 5 605 335 HOH HOH . Z 12 HOH B 6 606 392 HOH HOH . Z 12 HOH B 7 607 349 HOH HOH . Z 12 HOH B 8 608 363 HOH HOH . Z 12 HOH B 9 609 516 HOH HOH . Z 12 HOH B 10 610 351 HOH HOH . Z 12 HOH B 11 611 505 HOH HOH . Z 12 HOH B 12 612 333 HOH HOH . Z 12 HOH B 13 613 318 HOH HOH . Z 12 HOH B 14 614 319 HOH HOH . Z 12 HOH B 15 615 362 HOH HOH . Z 12 HOH B 16 616 427 HOH HOH . Z 12 HOH B 17 617 423 HOH HOH . Z 12 HOH B 18 618 438 HOH HOH . Z 12 HOH B 19 619 377 HOH HOH . Z 12 HOH B 20 620 361 HOH HOH . Z 12 HOH B 21 621 469 HOH HOH . Z 12 HOH B 22 622 1362 HOH HOH . Z 12 HOH B 23 623 487 HOH HOH . Z 12 HOH B 24 624 386 HOH HOH . Z 12 HOH B 25 625 517 HOH HOH . Z 12 HOH B 26 626 428 HOH HOH . Z 12 HOH B 27 627 430 HOH HOH . Z 12 HOH B 28 628 451 HOH HOH . Z 12 HOH B 29 629 412 HOH HOH . Z 12 HOH B 30 630 385 HOH HOH . Z 12 HOH B 31 631 459 HOH HOH . Z 12 HOH B 32 632 421 HOH HOH . Z 12 HOH B 33 633 432 HOH HOH . Z 12 HOH B 34 634 383 HOH HOH . Z 12 HOH B 35 635 460 HOH HOH . Z 12 HOH B 36 636 481 HOH HOH . Z 12 HOH B 37 637 375 HOH HOH . Z 12 HOH B 38 638 390 HOH HOH . Z 12 HOH B 39 639 461 HOH HOH . Z 12 HOH B 40 640 443 HOH HOH . Z 12 HOH B 41 641 442 HOH HOH . Z 12 HOH B 42 642 358 HOH HOH . Z 12 HOH B 43 643 407 HOH HOH . Z 12 HOH B 44 644 508 HOH HOH . Z 12 HOH B 45 645 326 HOH HOH . Z 12 HOH B 46 646 440 HOH HOH . Z 12 HOH B 47 647 422 HOH HOH . Z 12 HOH B 48 648 468 HOH HOH . Z 12 HOH B 49 649 526 HOH HOH . Z 12 HOH B 50 650 337 HOH HOH . Z 12 HOH B 51 651 1564 HOH HOH . Z 12 HOH B 52 652 474 HOH HOH . Z 12 HOH B 53 653 416 HOH HOH . Z 12 HOH B 54 654 448 HOH HOH . Z 12 HOH B 55 655 825 HOH HOH . Z 12 HOH B 56 656 470 HOH HOH . Z 12 HOH B 57 657 453 HOH HOH . Z 12 HOH B 58 658 484 HOH HOH . Z 12 HOH B 59 659 479 HOH HOH . Z 12 HOH B 60 660 414 HOH HOH . Z 12 HOH B 61 661 387 HOH HOH . Z 12 HOH B 62 662 457 HOH HOH . Z 12 HOH B 63 663 372 HOH HOH . Z 12 HOH B 64 664 529 HOH HOH . Z 12 HOH B 65 665 382 HOH HOH . Z 12 HOH B 66 666 436 HOH HOH . Z 12 HOH B 67 667 495 HOH HOH . Z 12 HOH B 68 668 345 HOH HOH . Z 12 HOH B 69 669 503 HOH HOH . Z 12 HOH B 70 670 454 HOH HOH . Z 12 HOH B 71 671 509 HOH HOH . Z 12 HOH B 72 672 564 HOH HOH . Z 12 HOH B 73 673 551 HOH HOH . Z 12 HOH B 74 674 559 HOH HOH . Z 12 HOH B 75 675 557 HOH HOH . Z 12 HOH B 76 676 903 HOH HOH . Z 12 HOH B 77 677 540 HOH HOH . Z 12 HOH B 78 678 534 HOH HOH . Z 12 HOH B 79 679 586 HOH HOH . Z 12 HOH B 80 680 528 HOH HOH . Z 12 HOH B 81 681 597 HOH HOH . Z 12 HOH B 82 682 560 HOH HOH . Z 12 HOH B 83 683 596 HOH HOH . Z 12 HOH B 84 684 577 HOH HOH . Z 12 HOH B 85 685 605 HOH HOH . Z 12 HOH B 86 686 327 HOH HOH . Z 12 HOH B 87 687 617 HOH HOH . Z 12 HOH B 88 688 520 HOH HOH . Z 12 HOH B 89 689 610 HOH HOH . AA 12 HOH C 1 601 643 HOH HOH . AA 12 HOH C 2 602 641 HOH HOH . AA 12 HOH C 3 603 645 HOH HOH . AA 12 HOH C 4 604 623 HOH HOH . AA 12 HOH C 5 605 792 HOH HOH . AA 12 HOH C 6 606 739 HOH HOH . AA 12 HOH C 7 607 634 HOH HOH . AA 12 HOH C 8 608 669 HOH HOH . AA 12 HOH C 9 609 660 HOH HOH . AA 12 HOH C 10 610 692 HOH HOH . AA 12 HOH C 11 611 746 HOH HOH . AA 12 HOH C 12 612 749 HOH HOH . AA 12 HOH C 13 613 698 HOH HOH . AA 12 HOH C 14 614 679 HOH HOH . AA 12 HOH C 15 615 664 HOH HOH . AA 12 HOH C 16 616 742 HOH HOH . AA 12 HOH C 17 617 732 HOH HOH . AA 12 HOH C 18 618 710 HOH HOH . AA 12 HOH C 19 619 786 HOH HOH . AA 12 HOH C 20 620 800 HOH HOH . AA 12 HOH C 21 621 659 HOH HOH . AA 12 HOH C 22 622 705 HOH HOH . AA 12 HOH C 23 623 687 HOH HOH . AA 12 HOH C 24 624 694 HOH HOH . AA 12 HOH C 25 625 770 HOH HOH . AA 12 HOH C 26 626 701 HOH HOH . AA 12 HOH C 27 627 757 HOH HOH . AA 12 HOH C 28 628 761 HOH HOH . AA 12 HOH C 29 629 750 HOH HOH . AA 12 HOH C 30 630 714 HOH HOH . AA 12 HOH C 31 631 735 HOH HOH . AA 12 HOH C 32 632 796 HOH HOH . AA 12 HOH C 33 633 676 HOH HOH . AA 12 HOH C 34 634 810 HOH HOH . AA 12 HOH C 35 635 834 HOH HOH . AA 12 HOH C 36 636 738 HOH HOH . AA 12 HOH C 37 637 748 HOH HOH . AA 12 HOH C 38 638 725 HOH HOH . AA 12 HOH C 39 639 753 HOH HOH . AA 12 HOH C 40 640 829 HOH HOH . AA 12 HOH C 41 641 721 HOH HOH . AA 12 HOH C 42 642 716 HOH HOH . AA 12 HOH C 43 643 713 HOH HOH . AA 12 HOH C 44 644 813 HOH HOH . AA 12 HOH C 45 645 858 HOH HOH . AA 12 HOH C 46 646 763 HOH HOH . AA 12 HOH C 47 647 835 HOH HOH . AA 12 HOH C 48 648 647 HOH HOH . AA 12 HOH C 49 649 747 HOH HOH . AA 12 HOH C 50 650 819 HOH HOH . AA 12 HOH C 51 651 663 HOH HOH . AA 12 HOH C 52 652 848 HOH HOH . AA 12 HOH C 53 653 655 HOH HOH . AA 12 HOH C 54 654 789 HOH HOH . AA 12 HOH C 55 655 677 HOH HOH . AA 12 HOH C 56 656 667 HOH HOH . AA 12 HOH C 57 657 685 HOH HOH . AA 12 HOH C 58 658 859 HOH HOH . AA 12 HOH C 59 659 740 HOH HOH . AA 12 HOH C 60 660 658 HOH HOH . AA 12 HOH C 61 661 650 HOH HOH . AA 12 HOH C 62 662 876 HOH HOH . AA 12 HOH C 63 663 809 HOH HOH . AA 12 HOH C 64 664 769 HOH HOH . AA 12 HOH C 65 665 803 HOH HOH . AA 12 HOH C 66 666 689 HOH HOH . AA 12 HOH C 67 667 784 HOH HOH . AA 12 HOH C 68 668 782 HOH HOH . AA 12 HOH C 69 669 787 HOH HOH . AA 12 HOH C 70 670 752 HOH HOH . AA 12 HOH C 71 671 741 HOH HOH . AA 12 HOH C 72 672 893 HOH HOH . AA 12 HOH C 73 673 840 HOH HOH . AA 12 HOH C 74 674 872 HOH HOH . AA 12 HOH C 75 675 914 HOH HOH . AA 12 HOH C 76 676 873 HOH HOH . AA 12 HOH C 77 677 764 HOH HOH . AA 12 HOH C 78 678 751 HOH HOH . AA 12 HOH C 79 679 910 HOH HOH . AA 12 HOH C 80 680 744 HOH HOH . AA 12 HOH C 81 681 894 HOH HOH . AA 12 HOH C 82 682 811 HOH HOH . AA 12 HOH C 83 683 817 HOH HOH . AA 12 HOH C 84 684 723 HOH HOH . AA 12 HOH C 85 685 915 HOH HOH . AA 12 HOH C 86 686 847 HOH HOH . AA 12 HOH C 87 687 773 HOH HOH . AA 12 HOH C 88 688 843 HOH HOH . AA 12 HOH C 89 689 791 HOH HOH . AA 12 HOH C 90 690 808 HOH HOH . AA 12 HOH C 91 691 765 HOH HOH . AA 12 HOH C 92 692 956 HOH HOH . AA 12 HOH C 93 693 880 HOH HOH . AA 12 HOH C 94 694 797 HOH HOH . AA 12 HOH C 95 695 733 HOH HOH . AA 12 HOH C 96 696 818 HOH HOH . AA 12 HOH C 97 697 1002 HOH HOH . AA 12 HOH C 98 698 799 HOH HOH . AA 12 HOH C 99 699 785 HOH HOH . AA 12 HOH C 100 700 670 HOH HOH . AA 12 HOH C 101 701 888 HOH HOH . AA 12 HOH C 102 702 830 HOH HOH . AA 12 HOH C 103 703 776 HOH HOH . AA 12 HOH C 104 704 887 HOH HOH . AA 12 HOH C 105 705 806 HOH HOH . AA 12 HOH C 106 706 868 HOH HOH . AA 12 HOH C 107 707 923 HOH HOH . AA 12 HOH C 108 708 971 HOH HOH . AA 12 HOH C 109 709 839 HOH HOH . AA 12 HOH C 110 710 730 HOH HOH . AA 12 HOH C 111 711 909 HOH HOH . AA 12 HOH C 112 712 822 HOH HOH . AA 12 HOH C 113 713 931 HOH HOH . AA 12 HOH C 114 714 906 HOH HOH . AA 12 HOH C 115 715 870 HOH HOH . AA 12 HOH C 116 716 955 HOH HOH . AA 12 HOH C 117 717 837 HOH HOH . AA 12 HOH C 118 718 913 HOH HOH . AA 12 HOH C 119 719 995 HOH HOH . AA 12 HOH C 120 720 889 HOH HOH . AA 12 HOH C 121 721 901 HOH HOH . AA 12 HOH C 122 722 737 HOH HOH . AA 12 HOH C 123 723 762 HOH HOH . AA 12 HOH C 124 724 902 HOH HOH . AA 12 HOH C 125 725 877 HOH HOH . AA 12 HOH C 126 726 821 HOH HOH . AA 12 HOH C 127 727 807 HOH HOH . AA 12 HOH C 128 728 719 HOH HOH . AA 12 HOH C 129 729 885 HOH HOH . AA 12 HOH C 130 730 998 HOH HOH . AA 12 HOH C 131 731 1016 HOH HOH . AA 12 HOH C 132 732 882 HOH HOH . AA 12 HOH C 133 733 833 HOH HOH . AA 12 HOH C 134 734 777 HOH HOH . AA 12 HOH C 135 735 875 HOH HOH . AA 12 HOH C 136 736 979 HOH HOH . AA 12 HOH C 137 737 771 HOH HOH . AA 12 HOH C 138 738 31 HOH HOH . AA 12 HOH C 139 739 864 HOH HOH . AA 12 HOH C 140 740 717 HOH HOH . AA 12 HOH C 141 741 801 HOH HOH . AA 12 HOH C 142 742 953 HOH HOH . AA 12 HOH C 143 743 1024 HOH HOH . AA 12 HOH C 144 744 963 HOH HOH . AA 12 HOH C 145 745 972 HOH HOH . AA 12 HOH C 146 746 775 HOH HOH . AA 12 HOH C 147 747 937 HOH HOH . AA 12 HOH C 148 748 1003 HOH HOH . AA 12 HOH C 149 749 898 HOH HOH . AA 12 HOH C 150 750 938 HOH HOH . AA 12 HOH C 151 751 1007 HOH HOH . AA 12 HOH C 152 752 1001 HOH HOH . AA 12 HOH C 153 753 852 HOH HOH . AA 12 HOH C 154 754 874 HOH HOH . AA 12 HOH C 155 755 986 HOH HOH . AA 12 HOH C 156 756 991 HOH HOH . AA 12 HOH C 157 757 999 HOH HOH . AA 12 HOH C 158 758 928 HOH HOH . AA 12 HOH C 159 759 954 HOH HOH . AA 12 HOH C 160 760 1019 HOH HOH . AA 12 HOH C 161 761 980 HOH HOH . AA 12 HOH C 162 762 1048 HOH HOH . AA 12 HOH C 163 763 883 HOH HOH . AA 12 HOH C 164 764 683 HOH HOH . AA 12 HOH C 165 765 976 HOH HOH . AA 12 HOH C 166 766 973 HOH HOH . AA 12 HOH C 167 767 1012 HOH HOH . AA 12 HOH C 168 768 943 HOH HOH . AA 12 HOH C 169 769 1006 HOH HOH . AA 12 HOH C 170 770 924 HOH HOH . AA 12 HOH C 171 771 1000 HOH HOH . AA 12 HOH C 172 772 1023 HOH HOH . AA 12 HOH C 173 773 936 HOH HOH . AA 12 HOH C 174 774 1054 HOH HOH . AA 12 HOH C 175 775 1060 HOH HOH . AA 12 HOH C 176 776 1056 HOH HOH . AA 12 HOH C 177 777 1025 HOH HOH . AA 12 HOH C 178 778 1065 HOH HOH . AA 12 HOH C 179 779 1059 HOH HOH . AA 12 HOH C 180 780 1064 HOH HOH . AA 12 HOH C 181 781 1090 HOH HOH . AA 12 HOH C 182 782 1044 HOH HOH . AA 12 HOH C 183 783 977 HOH HOH . AA 12 HOH C 184 784 1076 HOH HOH . AA 12 HOH C 185 785 1082 HOH HOH . AA 12 HOH C 186 786 1053 HOH HOH . AA 12 HOH C 187 787 1095 HOH HOH . AA 12 HOH C 188 788 1094 HOH HOH . BA 12 HOH D 1 601 1211 HOH HOH . BA 12 HOH D 2 602 1114 HOH HOH . BA 12 HOH D 3 603 1099 HOH HOH . BA 12 HOH D 4 604 1200 HOH HOH . BA 12 HOH D 5 605 1101 HOH HOH . BA 12 HOH D 6 606 1120 HOH HOH . BA 12 HOH D 7 607 1166 HOH HOH . BA 12 HOH D 8 608 1133 HOH HOH . BA 12 HOH D 9 609 1144 HOH HOH . BA 12 HOH D 10 610 1560 HOH HOH . BA 12 HOH D 11 611 1178 HOH HOH . BA 12 HOH D 12 612 696 HOH HOH . BA 12 HOH D 13 613 1217 HOH HOH . BA 12 HOH D 14 614 1145 HOH HOH . BA 12 HOH D 15 615 1554 HOH HOH . BA 12 HOH D 16 616 1212 HOH HOH . BA 12 HOH D 17 617 1202 HOH HOH . BA 12 HOH D 18 618 1555 HOH HOH . BA 12 HOH D 19 619 1177 HOH HOH . BA 12 HOH D 20 620 1193 HOH HOH . BA 12 HOH D 21 621 1186 HOH HOH . BA 12 HOH D 22 622 1258 HOH HOH . BA 12 HOH D 23 623 172 HOH HOH . BA 12 HOH D 24 624 1162 HOH HOH . BA 12 HOH D 25 625 1188 HOH HOH . BA 12 HOH D 26 626 1165 HOH HOH . BA 12 HOH D 27 627 1142 HOH HOH . BA 12 HOH D 28 628 1191 HOH HOH . BA 12 HOH D 29 629 1561 HOH HOH . BA 12 HOH D 30 630 1220 HOH HOH . BA 12 HOH D 31 631 1247 HOH HOH . BA 12 HOH D 32 632 1274 HOH HOH . BA 12 HOH D 33 633 1237 HOH HOH . BA 12 HOH D 34 634 1245 HOH HOH . BA 12 HOH D 35 635 1222 HOH HOH . BA 12 HOH D 36 636 1557 HOH HOH . BA 12 HOH D 37 637 1234 HOH HOH . BA 12 HOH D 38 638 1257 HOH HOH . BA 12 HOH D 39 639 1250 HOH HOH . BA 12 HOH D 40 640 1288 HOH HOH . BA 12 HOH D 41 641 1277 HOH HOH . BA 12 HOH D 42 642 1556 HOH HOH . CA 12 HOH E 1 201 379 HOH HOH . CA 12 HOH E 2 202 1340 HOH HOH . CA 12 HOH E 3 203 1353 HOH HOH . CA 12 HOH E 4 204 393 HOH HOH . CA 12 HOH E 5 205 1365 HOH HOH . CA 12 HOH E 6 206 1383 HOH HOH . CA 12 HOH E 7 207 1376 HOH HOH . CA 12 HOH E 8 208 1380 HOH HOH . CA 12 HOH E 9 209 1406 HOH HOH . CA 12 HOH E 10 210 1304 HOH HOH . DA 12 HOH F 1 501 1473 HOH HOH . DA 12 HOH F 2 502 1503 HOH HOH . DA 12 HOH F 3 503 1506 HOH HOH . DA 12 HOH F 4 504 1484 HOH HOH . DA 12 HOH F 5 505 1485 HOH HOH . DA 12 HOH F 6 506 1475 HOH HOH . DA 12 HOH F 7 507 1486 HOH HOH . DA 12 HOH F 8 508 1474 HOH HOH . DA 12 HOH F 9 509 1513 HOH HOH . DA 12 HOH F 10 510 1537 HOH HOH . DA 12 HOH F 11 511 1458 HOH HOH . DA 12 HOH F 12 512 1536 HOH HOH . DA 12 HOH F 13 513 1524 HOH HOH . DA 12 HOH F 14 514 1542 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . T 9 25.633 -9.826 -43.588 1 64.59 ? PB GDP 501 D 1 HETATM 2 O O1B GDP . . . T 9 24.86 -9.331 -44.788 1 65.62 ? O1B GDP 501 D 1 HETATM 3 O O2B GDP . . . T 9 26.088 -8.653 -42.753 1 69.53 ? O2B GDP 501 D 1 HETATM 4 O O3B GDP . . . T 9 26.853 -10.607 -44.015 1 72.97 ? O3B GDP 501 D 1 HETATM 5 O O3A GDP . . . T 9 24.708 -10.769 -42.677 1 70.64 ? O3A GDP 501 D 1 HETATM 6 P PA GDP . . . T 9 23.129 -10.96 -42.925 1 67.56 ? PA GDP 501 D 1 HETATM 7 O O1A GDP . . . T 9 22.839 -11.687 -44.214 1 80.05 ? O1A GDP 501 D 1 HETATM 8 O O2A GDP . . . T 9 22.408 -9.632 -42.887 1 64.3 ? O2A GDP 501 D 1 HETATM 9 O O5' GDP . . . T 9 22.748 -11.863 -41.65 1 68.93 ? O5' GDP 501 D 1 HETATM 10 C C5' GDP . . . T 9 21.865 -12.972 -41.76 1 69.36 ? C5' GDP 501 D 1 HETATM 11 C C4' GDP . . . T 9 20.966 -12.972 -40.534 1 67.94 ? C4' GDP 501 D 1 HETATM 12 O O4' GDP . . . T 9 20.254 -11.737 -40.538 1 63.44 ? O4' GDP 501 D 1 HETATM 13 C C3' GDP . . . T 9 19.932 -14.077 -40.607 1 75.03 ? C3' GDP 501 D 1 HETATM 14 O O3' GDP . . . T 9 19.721 -14.588 -39.287 1 72.62 ? O3' GDP 501 D 1 HETATM 15 C C2' GDP . . . T 9 18.676 -13.402 -41.117 1 66.12 ? C2' GDP 501 D 1 HETATM 16 O O2' GDP . . . T 9 17.517 -13.984 -40.52 1 72.71 ? O2' GDP 501 D 1 HETATM 17 C C1' GDP . . . T 9 18.849 -11.954 -40.691 1 62.42 ? C1' GDP 501 D 1 HETATM 18 N N9 GDP . . . T 9 18.344 -10.993 -41.699 1 64.95 ? N9 GDP 501 D 1 HETATM 19 C C8 GDP . . . T 9 18.867 -10.756 -42.917 1 65.29 ? C8 GDP 501 D 1 HETATM 20 N N7 GDP . . . T 9 18.163 -9.793 -43.569 1 65.56 ? N7 GDP 501 D 1 HETATM 21 C C5 GDP . . . T 9 17.171 -9.393 -42.75 1 62.18 ? C5 GDP 501 D 1 HETATM 22 C C6 GDP . . . T 9 16.064 -8.412 -42.803 1 62.94 ? C6 GDP 501 D 1 HETATM 23 O O6 GDP . . . T 9 15.884 -7.7 -43.814 1 63.06 ? O6 GDP 501 D 1 HETATM 24 N N1 GDP . . . T 9 15.262 -8.309 -41.733 1 66.56 ? N1 GDP 501 D 1 HETATM 25 C C2 GDP . . . T 9 15.431 -9.063 -40.627 1 62.69 ? C2 GDP 501 D 1 HETATM 26 N N2 GDP . . . T 9 14.583 -8.908 -39.582 1 62.2 ? N2 GDP 501 D 1 HETATM 27 N N3 GDP . . . T 9 16.421 -9.981 -40.513 1 64.02 ? N3 GDP 501 D 1 HETATM 28 C C4 GDP . . . T 9 17.301 -10.184 -41.52 1 64.24 ? C4 GDP 501 D 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #