data_5S53
#
_model_server_result.job_id            J6LQG_iWWpZyaxe6gYk39w 
_model_server_result.datetime_utc      '2024-11-07 16:46:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5s53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    5S53 
#
_exptl.entry_id    5S53 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.201 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5S53 
_cell.length_a            105.32 
_cell.length_b            159.31 
_cell.length_c            178.96 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5S53 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 K N N 
? 8 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 W O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 W O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc12 H MG MG . A MG 502 1_555 W O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc13 J CA CA . A CA 504 1_555 AA O HOH . E HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc15 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc16 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc17 L MG MG . B MG 502 1_555 X O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? 
metalc ? metalc18 L MG MG . B MG 502 1_555 X O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc19 L MG MG . B MG 502 1_555 X O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc20 L MG MG . B MG 502 1_555 Y O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc21 M CA CA . B CA 503 4_455 C OE1 GLU 284 C GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc22 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc23 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc24 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc25 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc26 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc27 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc28 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc29 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc30 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc31 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
metalc ? metalc32 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc33 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc34 R CA CA . C CA 503 1_555 Y O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc35 D OE1 GLN 11 D GLN 11 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc36 S O1A GDP . D GDP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc37 T MG MG . D MG 502 1_555 Z O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc38 F OE2 GLU 331 F GLU 331 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc39 U O3G ACP . F ACP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? 
metalc ? metalc40 U O1B ACP . F ACP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
#
_chem_comp.formula           'C10 H15 N5 O11 P2' 
_chem_comp.formula_weight    443.201 
_chem_comp.id                GDP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B GDP doub 134 n n 
PB O2B GDP sing 135 n n 
PB O3B GDP sing 136 n n 
PB O3A GDP sing 137 n n 
O2B HOB2 GDP sing 138 n n 
O3B HOB3 GDP sing 139 n n 
O3A PA GDP sing 140 n n 
PA O1A GDP doub 141 n n 
PA O2A GDP sing 142 n n 
PA O5' GDP sing 143 n n 
O2A HOA2 GDP sing 144 n n 
O5' C5' GDP sing 145 n n 
C5' C4' GDP sing 146 n n 
C5' H5' GDP sing 147 n n 
C5' "H5''" GDP sing 148 n n 
C4' O4' GDP sing 149 n n 
C4' C3' GDP sing 150 n n 
C4' H4' GDP sing 151 n n 
O4' C1' GDP sing 152 n n 
C3' O3' GDP sing 153 n n 
C3' C2' GDP sing 154 n n 
C3' H3' GDP sing 155 n n 
O3' HO3' GDP sing 156 n n 
C2' O2' GDP sing 157 n n 
C2' C1' GDP sing 158 n n 
C2' H2' GDP sing 159 n n 
O2' HO2' GDP sing 160 n n 
C1' N9 GDP sing 161 n n 
C1' H1' GDP sing 162 n n 
N9 C8 GDP sing 163 n y 
N9 C4 GDP sing 164 n y 
C8 N7 GDP doub 165 n y 
C8 H8 GDP sing 166 n n 
N7 C5 GDP sing 167 n y 
C5 C6 GDP sing 168 n n 
C5 C4 GDP doub 169 n y 
C6 O6 GDP doub 170 n n 
C6 N1 GDP sing 171 n n 
N1 C2 GDP sing 172 n n 
N1 HN1 GDP sing 173 n n 
C2 N2 GDP sing 174 n n 
C2 N3 GDP doub 175 n n 
N2 HN21 GDP sing 176 n n 
N2 HN22 GDP sing 177 n n 
N3 C4 GDP sing 178 n n 
#
_atom_sites.entry_id                     5S53 
_atom_sites.fract_transf_matrix[1][1]    0.009495 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 7 CA A 1 504 504 CA CA . 
K 8 GDP B 1 501 501 GDP GDP . 
L 6 MG B 1 502 502 MG MG . 
M 7 CA B 1 503 503 CA CA . 
N 9 MES B 1 504 504 MES MES . 
O 10 WZM B 1 505 601 WZM DRG . 
P 5 GTP C 1 501 501 GTP GTP . 
Q 6 MG C 1 502 502 MG MG . 
R 7 CA C 1 503 503 CA CA . 
S 8 GDP D 1 501 501 GDP GDP . 
T 6 MG D 1 502 502 MG MG . 
U 11 ACP F 1 401 401 ACP ACP . 
V 6 MG F 1 402 402 MG MG . 
W 12 HOH A 1 601 79 HOH HOH . 
W 12 HOH A 2 602 40 HOH HOH . 
W 12 HOH A 3 603 78 HOH HOH . 
W 12 HOH A 4 604 65 HOH HOH . 
W 12 HOH A 5 605 180 HOH HOH . 
W 12 HOH A 6 606 126 HOH HOH . 
W 12 HOH A 7 607 161 HOH HOH . 
W 12 HOH A 8 608 47 HOH HOH . 
W 12 HOH A 9 609 118 HOH HOH . 
W 12 HOH A 10 610 258 HOH HOH . 
W 12 HOH A 11 611 203 HOH HOH . 
W 12 HOH A 12 612 719 HOH HOH . 
W 12 HOH A 13 613 263 HOH HOH . 
W 12 HOH A 14 614 267 HOH HOH . 
X 12 HOH B 1 601 505 HOH HOH . 
X 12 HOH B 2 602 333 HOH HOH . 
X 12 HOH B 3 603 405 HOH HOH . 
X 12 HOH B 4 604 390 HOH HOH . 
X 12 HOH B 5 605 349 HOH HOH . 
X 12 HOH B 6 606 1545 HOH HOH . 
X 12 HOH B 7 607 362 HOH HOH . 
X 12 HOH B 8 608 363 HOH HOH . 
X 12 HOH B 9 609 375 HOH HOH . 
X 12 HOH B 10 610 351 HOH HOH . 
X 12 HOH B 11 611 382 HOH HOH . 
X 12 HOH B 12 612 428 HOH HOH . 
X 12 HOH B 13 613 451 HOH HOH . 
X 12 HOH B 14 614 412 HOH HOH . 
X 12 HOH B 15 615 438 HOH HOH . 
X 12 HOH B 16 616 526 HOH HOH . 
X 12 HOH B 17 617 503 HOH HOH . 
X 12 HOH B 18 618 508 HOH HOH . 
X 12 HOH B 19 619 1362 HOH HOH . 
X 12 HOH B 20 620 432 HOH HOH . 
X 12 HOH B 21 621 817 HOH HOH . 
X 12 HOH B 22 622 487 HOH HOH . 
X 12 HOH B 23 623 454 HOH HOH . 
X 12 HOH B 24 624 534 HOH HOH . 
X 12 HOH B 25 625 479 HOH HOH . 
X 12 HOH B 26 626 540 HOH HOH . 
X 12 HOH B 27 627 436 HOH HOH . 
X 12 HOH B 28 628 345 HOH HOH . 
X 12 HOH B 29 629 290 HOH HOH . 
X 12 HOH B 30 630 1064 HOH HOH . 
X 12 HOH B 31 631 617 HOH HOH . 
X 12 HOH B 32 632 577 HOH HOH . 
X 12 HOH B 33 633 610 HOH HOH . 
X 12 HOH B 34 634 619 HOH HOH . 
Y 12 HOH C 1 601 641 HOH HOH . 
Y 12 HOH C 2 602 888 HOH HOH . 
Y 12 HOH C 3 603 732 HOH HOH . 
Y 12 HOH C 4 604 677 HOH HOH . 
Y 12 HOH C 5 605 730 HOH HOH . 
Y 12 HOH C 6 606 800 HOH HOH . 
Y 12 HOH C 7 607 803 HOH HOH . 
Y 12 HOH C 8 608 739 HOH HOH . 
Y 12 HOH C 9 609 645 HOH HOH . 
Y 12 HOH C 10 610 735 HOH HOH . 
Y 12 HOH C 11 611 622 HOH HOH . 
Y 12 HOH C 12 612 692 HOH HOH . 
Y 12 HOH C 13 613 647 HOH HOH . 
Y 12 HOH C 14 614 664 HOH HOH . 
Y 12 HOH C 15 615 659 HOH HOH . 
Y 12 HOH C 16 616 747 HOH HOH . 
Y 12 HOH C 17 617 721 HOH HOH . 
Y 12 HOH C 18 618 913 HOH HOH . 
Y 12 HOH C 19 619 753 HOH HOH . 
Y 12 HOH C 20 620 792 HOH HOH . 
Y 12 HOH C 21 621 963 HOH HOH . 
Y 12 HOH C 22 622 751 HOH HOH . 
Y 12 HOH C 23 623 893 HOH HOH . 
Y 12 HOH C 24 624 923 HOH HOH . 
Y 12 HOH C 25 625 938 HOH HOH . 
Y 12 HOH C 26 626 776 HOH HOH . 
Y 12 HOH C 27 627 910 HOH HOH . 
Y 12 HOH C 28 628 979 HOH HOH . 
Y 12 HOH C 29 629 807 HOH HOH . 
Y 12 HOH C 30 630 915 HOH HOH . 
Y 12 HOH C 31 631 667 HOH HOH . 
Y 12 HOH C 32 632 909 HOH HOH . 
Y 12 HOH C 33 633 874 HOH HOH . 
Y 12 HOH C 34 634 882 HOH HOH . 
Y 12 HOH C 35 635 953 HOH HOH . 
Y 12 HOH C 36 636 801 HOH HOH . 
Y 12 HOH C 37 637 1016 HOH HOH . 
Y 12 HOH C 38 638 1041 HOH HOH . 
Y 12 HOH C 39 639 980 HOH HOH . 
Y 12 HOH C 40 640 977 HOH HOH . 
Y 12 HOH C 41 641 1007 HOH HOH . 
Y 12 HOH C 42 642 1024 HOH HOH . 
Y 12 HOH C 43 643 995 HOH HOH . 
Y 12 HOH C 44 644 976 HOH HOH . 
Y 12 HOH C 45 645 972 HOH HOH . 
Y 12 HOH C 46 646 936 HOH HOH . 
Y 12 HOH C 47 647 928 HOH HOH . 
Y 12 HOH C 48 648 937 HOH HOH . 
Y 12 HOH C 49 649 924 HOH HOH . 
Y 12 HOH C 50 650 1000 HOH HOH . 
Y 12 HOH C 51 651 1025 HOH HOH . 
Y 12 HOH C 52 652 1044 HOH HOH . 
Y 12 HOH C 53 653 1048 HOH HOH . 
Y 12 HOH C 54 654 1053 HOH HOH . 
Y 12 HOH C 55 655 1095 HOH HOH . 
Z 12 HOH D 1 601 1178 HOH HOH . 
Z 12 HOH D 2 602 1211 HOH HOH . 
Z 12 HOH D 3 603 1200 HOH HOH . 
Z 12 HOH D 4 604 1274 HOH HOH . 
Z 12 HOH D 5 605 1144 HOH HOH . 
Z 12 HOH D 6 606 1220 HOH HOH . 
Z 12 HOH D 7 607 1222 HOH HOH . 
Z 12 HOH D 8 608 1257 HOH HOH . 
Z 12 HOH D 9 609 1180 HOH HOH . 
AA 12 HOH E 1 201 1334 HOH HOH . 
AA 12 HOH E 2 202 660 HOH HOH . 
BA 12 HOH F 1 501 1537 HOH HOH . 
BA 12 HOH F 2 502 1544 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB GDP . . . K 8 18.732 50.049 15.861 1 67.28 ? PB GDP 501 B 1 
HETATM 2 O O1B GDP . . . K 8 19.168 48.866 15.056 1 65.02 ? O1B GDP 501 B 1 
HETATM 3 O O2B GDP . . . K 8 19.94 50.739 16.409 1 64.8 ? O2B GDP 501 B 1 
HETATM 4 O O3B GDP . . . K 8 17.935 51.039 15.069 1 64.43 ? O3B GDP 501 B 1 
HETATM 5 O O3A GDP . . . K 8 17.849 49.489 17.055 1 64.96 ? O3A GDP 501 B 1 
HETATM 6 P PA GDP . . . K 8 16.268 49.271 16.954 1 64.32 ? PA GDP 501 B 1 
HETATM 7 O O1A GDP . . . K 8 15.861 48.633 15.648 1 75.63 ? O1A GDP 501 B 1 
HETATM 8 O O2A GDP . . . K 8 15.557 50.587 17.161 1 64.24 ? O2A GDP 501 B 1 
HETATM 9 O O5' GDP . . . K 8 16.059 48.27 18.199 1 66.13 ? O5' GDP 501 B 1 
HETATM 10 C C5' GDP . . . K 8 14.965 47.36 18.278 1 69.15 ? C5' GDP 501 B 1 
HETATM 11 C C4' GDP . . . K 8 14.426 47.401 19.7 1 63.57 ? C4' GDP 501 B 1 
HETATM 12 O O4' GDP . . . K 8 14.033 48.749 19.958 1 59.6 ? O4' GDP 501 B 1 
HETATM 13 C C3' GDP . . . K 8 13.186 46.539 19.836 1 68.24 ? C3' GDP 501 B 1 
HETATM 14 O O3' GDP . . . K 8 13.13 45.99 21.157 1 72.31 ? O3' GDP 501 B 1 
HETATM 15 C C2' GDP . . . K 8 12.04 47.504 19.632 1 66.33 ? C2' GDP 501 B 1 
HETATM 16 O O2' GDP . . . K 8 10.896 47.131 20.406 1 69.5 ? O2' GDP 501 B 1 
HETATM 17 C C1' GDP . . . K 8 12.615 48.827 20.107 1 66.17 ? C1' GDP 501 B 1 
HETATM 18 N N9 GDP . . . K 8 12.073 49.938 19.298 1 69.33 ? N9 GDP 501 B 1 
HETATM 19 C C8 GDP . . . K 8 12.294 50.158 17.991 1 67.45 ? C8 GDP 501 B 1 
HETATM 20 N N7 GDP . . . K 8 11.645 51.276 17.573 1 69.72 ? N7 GDP 501 B 1 
HETATM 21 C C5 GDP . . . K 8 10.995 51.79 18.633 1 70.16 ? C5 GDP 501 B 1 
HETATM 22 C C6 GDP . . . K 8 10.122 52.958 18.899 1 70.95 ? C6 GDP 501 B 1 
HETATM 23 O O6 GDP . . . K 8 9.823 53.766 17.995 1 73.09 ? O6 GDP 501 B 1 
HETATM 24 N N1 GDP . . . K 8 9.654 53.127 20.142 1 74.53 ? N1 GDP 501 B 1 
HETATM 25 C C2 GDP . . . K 8 9.955 52.28 21.146 1 75.14 ? C2 GDP 501 B 1 
HETATM 26 N N2 GDP . . . K 8 9.445 52.521 22.379 1 71.71 ? N2 GDP 501 B 1 
HETATM 27 N N3 GDP . . . K 8 10.751 51.191 20.977 1 71.32 ? N3 GDP 501 B 1 
HETATM 28 C C4 GDP . . . K 8 11.283 50.901 19.767 1 73.69 ? C4 GDP 501 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    76 
_model_server_stats.query_time_ms           378 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           28 
#