data_5S5M # _model_server_result.job_id ApWRb0Scb_c7uB0SuQ0Ffg _model_server_result.datetime_utc '2024-11-07 16:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 5S5M # _exptl.entry_id 5S5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5S5M _cell.length_a 105.66 _cell.length_b 159.8 _cell.length_c 179.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N ? 6 Q N N ? 6 U N N ? 6 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc10 H MG MG . A MG 502 1_555 X O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc11 H MG MG . A MG 502 1_555 X O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc12 H MG MG . A MG 502 1_555 X O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc13 J CA CA . A CA 504 1_555 X O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc15 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc16 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc17 L MG MG . B MG 502 1_555 Y O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc18 L MG MG . B MG 502 1_555 Y O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc19 L MG MG . B MG 502 1_555 Z O HOH . C HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc20 M CA CA . B CA 503 4_455 C OE1 GLU 284 C GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc21 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc22 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc23 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc24 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc25 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc26 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc27 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc28 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc29 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc30 Q MG MG . C MG 502 1_555 Z O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc31 Q MG MG . C MG 502 1_555 Z O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc32 Q MG MG . C MG 502 1_555 Z O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc33 Q MG MG . C MG 502 1_555 Z O HOH . C HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc34 D OE1 GLN 11 D GLN 11 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc35 T O1A GDP . D GDP 501 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc36 U MG MG . D MG 502 1_555 AA O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc37 F OE2 GLU 331 F GLU 331 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc38 V O3G ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc39 V O1B ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5S5M _atom_sites.fract_transf_matrix[1][1] 0.009464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 7 CA A 1 504 504 CA CA . K 8 GDP B 1 501 501 GDP GDP . L 6 MG B 1 502 502 MG MG . M 7 CA B 1 503 503 CA CA . N 9 MES B 1 504 504 MES MES . O 10 X0S B 1 505 601 X0S DRG . P 5 GTP C 1 501 501 GTP GTP . Q 6 MG C 1 502 502 MG MG . R 7 CA C 1 503 503 CA CA . S 10 X0S C 1 504 601 X0S DRG . T 8 GDP D 1 501 501 GDP GDP . U 6 MG D 1 502 502 MG MG . V 11 ACP F 1 401 401 ACP ACP . W 6 MG F 1 402 402 MG MG . X 12 HOH A 1 601 29 HOH HOH . X 12 HOH A 2 602 161 HOH HOH . X 12 HOH A 3 603 78 HOH HOH . X 12 HOH A 4 604 180 HOH HOH . X 12 HOH A 5 605 263 HOH HOH . X 12 HOH A 6 606 40 HOH HOH . X 12 HOH A 7 607 719 HOH HOH . X 12 HOH A 8 608 43 HOH HOH . X 12 HOH A 9 609 118 HOH HOH . X 12 HOH A 10 610 228 HOH HOH . X 12 HOH A 11 611 258 HOH HOH . X 12 HOH A 12 612 273 HOH HOH . X 12 HOH A 13 613 267 HOH HOH . Y 12 HOH B 1 601 362 HOH HOH . Y 12 HOH B 2 602 349 HOH HOH . Y 12 HOH B 3 603 505 HOH HOH . Y 12 HOH B 4 604 377 HOH HOH . Y 12 HOH B 5 605 440 HOH HOH . Y 12 HOH B 6 606 526 HOH HOH . Y 12 HOH B 7 607 351 HOH HOH . Y 12 HOH B 8 608 1362 HOH HOH . Y 12 HOH B 9 609 438 HOH HOH . Y 12 HOH B 10 610 817 HOH HOH . Y 12 HOH B 11 611 469 HOH HOH . Y 12 HOH B 12 612 432 HOH HOH . Y 12 HOH B 13 613 470 HOH HOH . Y 12 HOH B 14 614 479 HOH HOH . Y 12 HOH B 15 615 509 HOH HOH . Y 12 HOH B 16 616 390 HOH HOH . Y 12 HOH B 17 617 430 HOH HOH . Y 12 HOH B 18 618 405 HOH HOH . Y 12 HOH B 19 619 528 HOH HOH . Y 12 HOH B 20 620 503 HOH HOH . Y 12 HOH B 21 621 345 HOH HOH . Y 12 HOH B 22 622 436 HOH HOH . Y 12 HOH B 23 623 534 HOH HOH . Y 12 HOH B 24 624 290 HOH HOH . Y 12 HOH B 25 625 540 HOH HOH . Z 12 HOH C 1 601 623 HOH HOH . Z 12 HOH C 2 602 677 HOH HOH . Z 12 HOH C 3 603 732 HOH HOH . Z 12 HOH C 4 604 660 HOH HOH . Z 12 HOH C 5 605 723 HOH HOH . Z 12 HOH C 6 606 739 HOH HOH . Z 12 HOH C 7 607 840 HOH HOH . Z 12 HOH C 8 608 664 HOH HOH . Z 12 HOH C 9 609 721 HOH HOH . Z 12 HOH C 10 610 714 HOH HOH . Z 12 HOH C 11 611 888 HOH HOH . Z 12 HOH C 12 612 851 HOH HOH . Z 12 HOH C 13 613 909 HOH HOH . Z 12 HOH C 14 614 659 HOH HOH . Z 12 HOH C 15 615 701 HOH HOH . Z 12 HOH C 16 616 811 HOH HOH . Z 12 HOH C 17 617 991 HOH HOH . Z 12 HOH C 18 618 764 HOH HOH . Z 12 HOH C 19 619 792 HOH HOH . Z 12 HOH C 20 620 744 HOH HOH . Z 12 HOH C 21 621 747 HOH HOH . Z 12 HOH C 22 622 913 HOH HOH . Z 12 HOH C 23 623 893 HOH HOH . Z 12 HOH C 24 624 757 HOH HOH . Z 12 HOH C 25 625 1016 HOH HOH . Z 12 HOH C 26 626 903 HOH HOH . Z 12 HOH C 27 627 1024 HOH HOH . Z 12 HOH C 28 628 938 HOH HOH . Z 12 HOH C 29 629 953 HOH HOH . Z 12 HOH C 30 630 937 HOH HOH . Z 12 HOH C 31 631 910 HOH HOH . Z 12 HOH C 32 632 833 HOH HOH . Z 12 HOH C 33 633 1041 HOH HOH . Z 12 HOH C 34 634 1002 HOH HOH . Z 12 HOH C 35 635 882 HOH HOH . Z 12 HOH C 36 636 883 HOH HOH . Z 12 HOH C 37 637 956 HOH HOH . Z 12 HOH C 38 638 874 HOH HOH . Z 12 HOH C 39 639 1007 HOH HOH . Z 12 HOH C 40 640 767 HOH HOH . Z 12 HOH C 41 641 928 HOH HOH . Z 12 HOH C 42 642 995 HOH HOH . Z 12 HOH C 43 643 986 HOH HOH . Z 12 HOH C 44 644 924 HOH HOH . Z 12 HOH C 45 645 1025 HOH HOH . Z 12 HOH C 46 646 1000 HOH HOH . Z 12 HOH C 47 647 976 HOH HOH . Z 12 HOH C 48 648 1076 HOH HOH . AA 12 HOH D 1 601 1177 HOH HOH . AA 12 HOH D 2 602 1200 HOH HOH . AA 12 HOH D 3 603 1220 HOH HOH . AA 12 HOH D 4 604 1274 HOH HOH . AA 12 HOH D 5 605 1193 HOH HOH . AA 12 HOH D 6 606 1222 HOH HOH . AA 12 HOH D 7 607 1245 HOH HOH . AA 12 HOH D 8 608 973 HOH HOH . AA 12 HOH D 9 609 1180 HOH HOH . BA 12 HOH E 1 201 393 HOH HOH . BA 12 HOH E 2 202 379 HOH HOH . BA 12 HOH E 3 203 1406 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 25.424 _atom_site.Cartn_y 77.063 _atom_site.Cartn_z 44.192 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.56 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #