data_5S5N # _model_server_result.job_id P4Wt7r9AlKZo4bUdctVDew _model_server_result.datetime_utc '2024-11-07 16:51:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 5S5N # _exptl.entry_id 5S5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5S5N _cell.length_a 105.61 _cell.length_b 159.43 _cell.length_c 179.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 L N N ? 7 Q N N ? 7 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc10 H MG MG . A MG 502 1_555 X O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc11 H MG MG . A MG 502 1_555 X O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc12 X O HOH . A HOH 609 1_555 U CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc13 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc14 B OE1 GLU 111 B GLU 113 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc15 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc16 J O2A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc17 K MG MG . B MG 502 1_555 Y O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc18 K MG MG . B MG 502 1_555 Y O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc19 K MG MG . B MG 502 1_555 Y O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc20 K MG MG . B MG 502 1_555 Z O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc21 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc22 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc23 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc24 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc25 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc26 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc27 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc28 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc29 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc30 P MG MG . C MG 502 1_555 Z O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc31 P MG MG . C MG 502 1_555 Z O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc32 P MG MG . C MG 502 1_555 Z O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc33 D OE1 GLN 11 D GLN 11 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc34 S O1A GDP . D GDP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc35 T MG MG . D MG 502 1_555 AA O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc36 F OE2 GLU 331 F GLU 331 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc37 V O3G ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc38 V O1B ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5S5N _atom_sites.fract_transf_matrix[1][1] 0.009469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 7 CA B 1 503 503 CA CA . M 9 MES B 1 504 504 MES MES . N 10 W0Y B 1 505 601 W0Y DRG . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 503 CA CA . R 10 W0Y C 1 504 601 W0Y DRG . S 8 GDP D 1 501 501 GDP GDP . T 6 MG D 1 502 502 MG MG . U 7 CA E 1 201 504 CA CA . V 11 ACP F 1 401 401 ACP ACP . W 6 MG F 1 402 402 MG MG . X 12 HOH A 1 601 1557 HOH HOH . X 12 HOH A 2 602 78 HOH HOH . X 12 HOH A 3 603 79 HOH HOH . X 12 HOH A 4 604 161 HOH HOH . X 12 HOH A 5 605 60 HOH HOH . X 12 HOH A 6 606 719 HOH HOH . X 12 HOH A 7 607 40 HOH HOH . X 12 HOH A 8 608 126 HOH HOH . X 12 HOH A 9 609 213 HOH HOH . X 12 HOH A 10 610 65 HOH HOH . X 12 HOH A 11 611 198 HOH HOH . X 12 HOH A 12 612 258 HOH HOH . X 12 HOH A 13 613 135 HOH HOH . X 12 HOH A 14 614 194 HOH HOH . X 12 HOH A 15 615 263 HOH HOH . X 12 HOH A 16 616 203 HOH HOH . Y 12 HOH B 1 601 1556 HOH HOH . Y 12 HOH B 2 602 440 HOH HOH . Y 12 HOH B 3 603 423 HOH HOH . Y 12 HOH B 4 604 526 HOH HOH . Y 12 HOH B 5 605 331 HOH HOH . Y 12 HOH B 6 606 469 HOH HOH . Y 12 HOH B 7 607 333 HOH HOH . Y 12 HOH B 8 608 375 HOH HOH . Y 12 HOH B 9 609 1362 HOH HOH . Y 12 HOH B 10 610 428 HOH HOH . Y 12 HOH B 11 611 432 HOH HOH . Y 12 HOH B 12 612 519 HOH HOH . Y 12 HOH B 13 613 487 HOH HOH . Y 12 HOH B 14 614 479 HOH HOH . Y 12 HOH B 15 615 559 HOH HOH . Y 12 HOH B 16 616 503 HOH HOH . Y 12 HOH B 17 617 540 HOH HOH . Y 12 HOH B 18 618 1406 HOH HOH . Y 12 HOH B 19 619 470 HOH HOH . Y 12 HOH B 20 620 436 HOH HOH . Y 12 HOH B 21 621 345 HOH HOH . Y 12 HOH B 22 622 534 HOH HOH . Y 12 HOH B 23 623 1555 HOH HOH . Y 12 HOH B 24 624 577 HOH HOH . Y 12 HOH B 25 625 564 HOH HOH . Y 12 HOH B 26 626 610 HOH HOH . Z 12 HOH C 1 601 677 HOH HOH . Z 12 HOH C 2 602 837 HOH HOH . Z 12 HOH C 3 603 792 HOH HOH . Z 12 HOH C 4 604 664 HOH HOH . Z 12 HOH C 5 605 730 HOH HOH . Z 12 HOH C 6 606 721 HOH HOH . Z 12 HOH C 7 607 888 HOH HOH . Z 12 HOH C 8 608 732 HOH HOH . Z 12 HOH C 9 609 622 HOH HOH . Z 12 HOH C 10 610 906 HOH HOH . Z 12 HOH C 11 611 956 HOH HOH . Z 12 HOH C 12 612 747 HOH HOH . Z 12 HOH C 13 613 701 HOH HOH . Z 12 HOH C 14 614 938 HOH HOH . Z 12 HOH C 15 615 909 HOH HOH . Z 12 HOH C 16 616 893 HOH HOH . Z 12 HOH C 17 617 1041 HOH HOH . Z 12 HOH C 18 618 765 HOH HOH . Z 12 HOH C 19 619 751 HOH HOH . Z 12 HOH C 20 620 1016 HOH HOH . Z 12 HOH C 21 621 753 HOH HOH . Z 12 HOH C 22 622 913 HOH HOH . Z 12 HOH C 23 623 1007 HOH HOH . Z 12 HOH C 24 624 886 HOH HOH . Z 12 HOH C 25 625 800 HOH HOH . Z 12 HOH C 26 626 801 HOH HOH . Z 12 HOH C 27 627 986 HOH HOH . Z 12 HOH C 28 628 851 HOH HOH . Z 12 HOH C 29 629 979 HOH HOH . Z 12 HOH C 30 630 910 HOH HOH . Z 12 HOH C 31 631 953 HOH HOH . Z 12 HOH C 32 632 963 HOH HOH . Z 12 HOH C 33 633 1002 HOH HOH . Z 12 HOH C 34 634 1024 HOH HOH . Z 12 HOH C 35 635 972 HOH HOH . Z 12 HOH C 36 636 1065 HOH HOH . Z 12 HOH C 37 637 874 HOH HOH . Z 12 HOH C 38 638 928 HOH HOH . Z 12 HOH C 39 639 924 HOH HOH . Z 12 HOH C 40 640 1025 HOH HOH . Z 12 HOH C 41 641 995 HOH HOH . Z 12 HOH C 42 642 1000 HOH HOH . Z 12 HOH C 43 643 1053 HOH HOH . Z 12 HOH C 44 644 1095 HOH HOH . AA 12 HOH D 1 601 1200 HOH HOH . AA 12 HOH D 2 602 1222 HOH HOH . AA 12 HOH D 3 603 1274 HOH HOH . BA 12 HOH E 1 301 379 HOH HOH . BA 12 HOH E 2 302 698 HOH HOH . BA 12 HOH E 3 303 1353 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 7 _atom_site.Cartn_x 32.806 _atom_site.Cartn_y 110.302 _atom_site.Cartn_z 56.467 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 117.37 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #