data_5S5N
#
_model_server_result.job_id            0udg-ghvdUXyB55gLJNi-w 
_model_server_result.datetime_utc      '2024-11-25 07:55:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5s5n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":503}' 
#
_entry.id    5S5N 
#
_exptl.entry_id    5S5N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5S5N 
_cell.length_a            105.61 
_cell.length_b            159.43 
_cell.length_c            179.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5S5N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 L N N 
? 7 Q N N 
? 7 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 X O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 X O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc12 X O HOH . A HOH 609 1_555 U CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc13 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc14 B OE1 GLU 111 B GLU 113 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc15 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc16 J O2A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc17 K MG MG . B MG 502 1_555 Y O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc18 K MG MG . B MG 502 1_555 Y O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc19 K MG MG . B MG 502 1_555 Y O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc20 K MG MG . B MG 502 1_555 Z O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
metalc ? metalc21 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc22 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc23 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc24 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc25 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc26 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc27 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc28 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc29 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc30 P MG MG . C MG 502 1_555 Z O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc31 P MG MG . C MG 502 1_555 Z O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? 
metalc ? metalc32 P MG MG . C MG 502 1_555 Z O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc33 D OE1 GLN 11 D GLN 11 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc34 S O1A GDP . D GDP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
metalc ? metalc35 T MG MG . D MG 502 1_555 AA O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc36 F OE2 GLU 331 F GLU 331 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc37 V O3G ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc38 V O1B ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5S5N 
_atom_sites.fract_transf_matrix[1][1]    0.009469 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005572 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 501 GDP GDP . 
K 6 MG B 1 502 502 MG MG . 
L 7 CA B 1 503 503 CA CA . 
M 9 MES B 1 504 504 MES MES . 
N 10 W0Y B 1 505 601 W0Y DRG . 
O 5 GTP C 1 501 501 GTP GTP . 
P 6 MG C 1 502 502 MG MG . 
Q 7 CA C 1 503 503 CA CA . 
R 10 W0Y C 1 504 601 W0Y DRG . 
S 8 GDP D 1 501 501 GDP GDP . 
T 6 MG D 1 502 502 MG MG . 
U 7 CA E 1 201 504 CA CA . 
V 11 ACP F 1 401 401 ACP ACP . 
W 6 MG F 1 402 402 MG MG . 
X 12 HOH A 1 601 1557 HOH HOH . 
X 12 HOH A 2 602 78 HOH HOH . 
X 12 HOH A 3 603 79 HOH HOH . 
X 12 HOH A 4 604 161 HOH HOH . 
X 12 HOH A 5 605 60 HOH HOH . 
X 12 HOH A 6 606 719 HOH HOH . 
X 12 HOH A 7 607 40 HOH HOH . 
X 12 HOH A 8 608 126 HOH HOH . 
X 12 HOH A 9 609 213 HOH HOH . 
X 12 HOH A 10 610 65 HOH HOH . 
X 12 HOH A 11 611 198 HOH HOH . 
X 12 HOH A 12 612 258 HOH HOH . 
X 12 HOH A 13 613 135 HOH HOH . 
X 12 HOH A 14 614 194 HOH HOH . 
X 12 HOH A 15 615 263 HOH HOH . 
X 12 HOH A 16 616 203 HOH HOH . 
Y 12 HOH B 1 601 1556 HOH HOH . 
Y 12 HOH B 2 602 440 HOH HOH . 
Y 12 HOH B 3 603 423 HOH HOH . 
Y 12 HOH B 4 604 526 HOH HOH . 
Y 12 HOH B 5 605 331 HOH HOH . 
Y 12 HOH B 6 606 469 HOH HOH . 
Y 12 HOH B 7 607 333 HOH HOH . 
Y 12 HOH B 8 608 375 HOH HOH . 
Y 12 HOH B 9 609 1362 HOH HOH . 
Y 12 HOH B 10 610 428 HOH HOH . 
Y 12 HOH B 11 611 432 HOH HOH . 
Y 12 HOH B 12 612 519 HOH HOH . 
Y 12 HOH B 13 613 487 HOH HOH . 
Y 12 HOH B 14 614 479 HOH HOH . 
Y 12 HOH B 15 615 559 HOH HOH . 
Y 12 HOH B 16 616 503 HOH HOH . 
Y 12 HOH B 17 617 540 HOH HOH . 
Y 12 HOH B 18 618 1406 HOH HOH . 
Y 12 HOH B 19 619 470 HOH HOH . 
Y 12 HOH B 20 620 436 HOH HOH . 
Y 12 HOH B 21 621 345 HOH HOH . 
Y 12 HOH B 22 622 534 HOH HOH . 
Y 12 HOH B 23 623 1555 HOH HOH . 
Y 12 HOH B 24 624 577 HOH HOH . 
Y 12 HOH B 25 625 564 HOH HOH . 
Y 12 HOH B 26 626 610 HOH HOH . 
Z 12 HOH C 1 601 677 HOH HOH . 
Z 12 HOH C 2 602 837 HOH HOH . 
Z 12 HOH C 3 603 792 HOH HOH . 
Z 12 HOH C 4 604 664 HOH HOH . 
Z 12 HOH C 5 605 730 HOH HOH . 
Z 12 HOH C 6 606 721 HOH HOH . 
Z 12 HOH C 7 607 888 HOH HOH . 
Z 12 HOH C 8 608 732 HOH HOH . 
Z 12 HOH C 9 609 622 HOH HOH . 
Z 12 HOH C 10 610 906 HOH HOH . 
Z 12 HOH C 11 611 956 HOH HOH . 
Z 12 HOH C 12 612 747 HOH HOH . 
Z 12 HOH C 13 613 701 HOH HOH . 
Z 12 HOH C 14 614 938 HOH HOH . 
Z 12 HOH C 15 615 909 HOH HOH . 
Z 12 HOH C 16 616 893 HOH HOH . 
Z 12 HOH C 17 617 1041 HOH HOH . 
Z 12 HOH C 18 618 765 HOH HOH . 
Z 12 HOH C 19 619 751 HOH HOH . 
Z 12 HOH C 20 620 1016 HOH HOH . 
Z 12 HOH C 21 621 753 HOH HOH . 
Z 12 HOH C 22 622 913 HOH HOH . 
Z 12 HOH C 23 623 1007 HOH HOH . 
Z 12 HOH C 24 624 886 HOH HOH . 
Z 12 HOH C 25 625 800 HOH HOH . 
Z 12 HOH C 26 626 801 HOH HOH . 
Z 12 HOH C 27 627 986 HOH HOH . 
Z 12 HOH C 28 628 851 HOH HOH . 
Z 12 HOH C 29 629 979 HOH HOH . 
Z 12 HOH C 30 630 910 HOH HOH . 
Z 12 HOH C 31 631 953 HOH HOH . 
Z 12 HOH C 32 632 963 HOH HOH . 
Z 12 HOH C 33 633 1002 HOH HOH . 
Z 12 HOH C 34 634 1024 HOH HOH . 
Z 12 HOH C 35 635 972 HOH HOH . 
Z 12 HOH C 36 636 1065 HOH HOH . 
Z 12 HOH C 37 637 874 HOH HOH . 
Z 12 HOH C 38 638 928 HOH HOH . 
Z 12 HOH C 39 639 924 HOH HOH . 
Z 12 HOH C 40 640 1025 HOH HOH . 
Z 12 HOH C 41 641 995 HOH HOH . 
Z 12 HOH C 42 642 1000 HOH HOH . 
Z 12 HOH C 43 643 1053 HOH HOH . 
Z 12 HOH C 44 644 1095 HOH HOH . 
AA 12 HOH D 1 601 1200 HOH HOH . 
AA 12 HOH D 2 602 1222 HOH HOH . 
AA 12 HOH D 3 603 1274 HOH HOH . 
BA 12 HOH E 1 301 379 HOH HOH . 
BA 12 HOH E 2 302 698 HOH HOH . 
BA 12 HOH E 3 303 1353 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               32.806 
_atom_site.Cartn_y               110.302 
_atom_site.Cartn_z               56.467 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        117.37 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#