data_5S5U # _model_server_result.job_id l_gwRcdjEmuzHctfyZgbPQ _model_server_result.datetime_utc '2024-11-23 22:00:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":501}' # _entry.id 5S5U # _exptl.entry_id 5S5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5S5U _cell.length_a 104.78 _cell.length_b 158.65 _cell.length_c 178.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc10 H MG MG . A MG 502 1_555 W O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc11 H MG MG . A MG 502 1_555 W O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc12 H MG MG . A MG 502 1_555 W O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc13 H MG MG . A MG 502 1_555 W O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc14 I CA CA . A CA 503 1_555 W O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc15 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc16 B OE1 GLU 111 B GLU 113 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc17 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc18 K MG MG . B MG 502 1_555 X O HOH . B HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc19 K MG MG . B MG 502 1_555 X O HOH . B HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc20 K MG MG . B MG 502 1_555 Y O HOH . C HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc21 L CA CA . B CA 503 4_455 C OE1 GLU 284 C GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc22 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc23 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc24 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc25 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc26 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc27 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc28 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc29 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc30 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc31 P MG MG . C MG 502 1_555 Y O HOH . C HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc32 P MG MG . C MG 502 1_555 Y O HOH . C HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc33 P MG MG . C MG 502 1_555 Y O HOH . C HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc34 P MG MG . C MG 502 1_555 Y O HOH . C HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc35 Q CA CA . C CA 503 1_555 Y O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc36 D OE1 GLN 11 D GLN 11 1_555 S MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc37 R O1A GDP . D GDP 501 1_555 S MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc38 F OE2 GLU 331 F GLU 331 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc39 U O3G ACP . F ACP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc40 U O1B ACP . F ACP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 134 n n PB O2B GDP sing 135 n n PB O3B GDP sing 136 n n PB O3A GDP sing 137 n n O2B HOB2 GDP sing 138 n n O3B HOB3 GDP sing 139 n n O3A PA GDP sing 140 n n PA O1A GDP doub 141 n n PA O2A GDP sing 142 n n PA O5' GDP sing 143 n n O2A HOA2 GDP sing 144 n n O5' C5' GDP sing 145 n n C5' C4' GDP sing 146 n n C5' H5' GDP sing 147 n n C5' "H5''" GDP sing 148 n n C4' O4' GDP sing 149 n n C4' C3' GDP sing 150 n n C4' H4' GDP sing 151 n n O4' C1' GDP sing 152 n n C3' O3' GDP sing 153 n n C3' C2' GDP sing 154 n n C3' H3' GDP sing 155 n n O3' HO3' GDP sing 156 n n C2' O2' GDP sing 157 n n C2' C1' GDP sing 158 n n C2' H2' GDP sing 159 n n O2' HO2' GDP sing 160 n n C1' N9 GDP sing 161 n n C1' H1' GDP sing 162 n n N9 C8 GDP sing 163 n y N9 C4 GDP sing 164 n y C8 N7 GDP doub 165 n y C8 H8 GDP sing 166 n n N7 C5 GDP sing 167 n y C5 C6 GDP sing 168 n n C5 C4 GDP doub 169 n y C6 O6 GDP doub 170 n n C6 N1 GDP sing 171 n n N1 C2 GDP sing 172 n n N1 HN1 GDP sing 173 n n C2 N2 GDP sing 174 n n C2 N3 GDP doub 175 n n N2 HN21 GDP sing 176 n n N2 HN22 GDP sing 177 n n N3 C4 GDP sing 178 n n # _atom_sites.entry_id 5S5U _atom_sites.fract_transf_matrix[1][1] 0.009544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 7 CA B 1 503 503 CA CA . M 9 MES B 1 504 504 MES MES . N 10 GOJ B 1 505 601 GOJ DRG . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 503 CA CA . R 8 GDP D 1 501 501 GDP GDP . S 6 MG D 1 502 502 MG MG . T 7 CA E 1 201 504 CA CA . U 11 ACP F 1 401 401 ACP ACP . V 6 MG F 1 402 402 MG MG . W 12 HOH A 1 601 47 HOH HOH . W 12 HOH A 2 602 179 HOH HOH . W 12 HOH A 3 603 126 HOH HOH . W 12 HOH A 4 604 79 HOH HOH . W 12 HOH A 5 605 1558 HOH HOH . W 12 HOH A 6 606 25 HOH HOH . W 12 HOH A 7 607 29 HOH HOH . W 12 HOH A 8 608 87 HOH HOH . W 12 HOH A 9 609 198 HOH HOH . W 12 HOH A 10 610 35 HOH HOH . W 12 HOH A 11 611 40 HOH HOH . W 12 HOH A 12 612 88 HOH HOH . W 12 HOH A 13 613 257 HOH HOH . W 12 HOH A 14 614 93 HOH HOH . W 12 HOH A 15 615 55 HOH HOH . W 12 HOH A 16 616 78 HOH HOH . W 12 HOH A 17 617 22 HOH HOH . W 12 HOH A 18 618 9 HOH HOH . W 12 HOH A 19 619 174 HOH HOH . W 12 HOH A 20 620 65 HOH HOH . W 12 HOH A 21 621 161 HOH HOH . W 12 HOH A 22 622 60 HOH HOH . W 12 HOH A 23 623 81 HOH HOH . W 12 HOH A 24 624 135 HOH HOH . W 12 HOH A 25 625 118 HOH HOH . W 12 HOH A 26 626 203 HOH HOH . W 12 HOH A 27 627 123 HOH HOH . W 12 HOH A 28 628 719 HOH HOH . W 12 HOH A 29 629 263 HOH HOH . W 12 HOH A 30 630 180 HOH HOH . W 12 HOH A 31 631 195 HOH HOH . W 12 HOH A 32 632 258 HOH HOH . W 12 HOH A 33 633 102 HOH HOH . W 12 HOH A 34 634 202 HOH HOH . W 12 HOH A 35 635 31 HOH HOH . W 12 HOH A 36 636 213 HOH HOH . W 12 HOH A 37 637 273 HOH HOH . W 12 HOH A 38 638 194 HOH HOH . W 12 HOH A 39 639 267 HOH HOH . W 12 HOH A 40 640 151 HOH HOH . W 12 HOH A 41 641 141 HOH HOH . W 12 HOH A 42 642 295 HOH HOH . W 12 HOH A 43 643 297 HOH HOH . X 12 HOH B 1 601 335 HOH HOH . X 12 HOH B 2 602 505 HOH HOH . X 12 HOH B 3 603 347 HOH HOH . X 12 HOH B 4 604 517 HOH HOH . X 12 HOH B 5 605 434 HOH HOH . X 12 HOH B 6 606 349 HOH HOH . X 12 HOH B 7 607 362 HOH HOH . X 12 HOH B 8 608 351 HOH HOH . X 12 HOH B 9 609 428 HOH HOH . X 12 HOH B 10 610 375 HOH HOH . X 12 HOH B 11 611 454 HOH HOH . X 12 HOH B 12 612 378 HOH HOH . X 12 HOH B 13 613 361 HOH HOH . X 12 HOH B 14 614 318 HOH HOH . X 12 HOH B 15 615 430 HOH HOH . X 12 HOH B 16 616 382 HOH HOH . X 12 HOH B 17 617 423 HOH HOH . X 12 HOH B 18 618 526 HOH HOH . X 12 HOH B 19 619 358 HOH HOH . X 12 HOH B 20 620 442 HOH HOH . X 12 HOH B 21 621 453 HOH HOH . X 12 HOH B 22 622 817 HOH HOH . X 12 HOH B 23 623 414 HOH HOH . X 12 HOH B 24 624 469 HOH HOH . X 12 HOH B 25 625 422 HOH HOH . X 12 HOH B 26 626 438 HOH HOH . X 12 HOH B 27 627 503 HOH HOH . X 12 HOH B 28 628 412 HOH HOH . X 12 HOH B 29 629 509 HOH HOH . X 12 HOH B 30 630 432 HOH HOH . X 12 HOH B 31 631 487 HOH HOH . X 12 HOH B 32 632 372 HOH HOH . X 12 HOH B 33 633 440 HOH HOH . X 12 HOH B 34 634 1362 HOH HOH . X 12 HOH B 35 635 470 HOH HOH . X 12 HOH B 36 636 551 HOH HOH . X 12 HOH B 37 637 1555 HOH HOH . X 12 HOH B 38 638 427 HOH HOH . X 12 HOH B 39 639 345 HOH HOH . X 12 HOH B 40 640 416 HOH HOH . X 12 HOH B 41 641 484 HOH HOH . X 12 HOH B 42 642 436 HOH HOH . X 12 HOH B 43 643 1559 HOH HOH . X 12 HOH B 44 644 495 HOH HOH . X 12 HOH B 45 645 479 HOH HOH . X 12 HOH B 46 646 597 HOH HOH . X 12 HOH B 47 647 534 HOH HOH . X 12 HOH B 48 648 540 HOH HOH . X 12 HOH B 49 649 528 HOH HOH . X 12 HOH B 50 650 557 HOH HOH . X 12 HOH B 51 651 1064 HOH HOH . X 12 HOH B 52 652 327 HOH HOH . X 12 HOH B 53 653 520 HOH HOH . X 12 HOH B 54 654 610 HOH HOH . X 12 HOH B 55 655 605 HOH HOH . X 12 HOH B 56 656 619 HOH HOH . Y 12 HOH C 1 601 1120 HOH HOH . Y 12 HOH C 2 602 660 HOH HOH . Y 12 HOH C 3 603 746 HOH HOH . Y 12 HOH C 4 604 623 HOH HOH . Y 12 HOH C 5 605 641 HOH HOH . Y 12 HOH C 6 606 735 HOH HOH . Y 12 HOH C 7 607 705 HOH HOH . Y 12 HOH C 8 608 645 HOH HOH . Y 12 HOH C 9 609 647 HOH HOH . Y 12 HOH C 10 610 669 HOH HOH . Y 12 HOH C 11 611 663 HOH HOH . Y 12 HOH C 12 612 687 HOH HOH . Y 12 HOH C 13 613 679 HOH HOH . Y 12 HOH C 14 614 770 HOH HOH . Y 12 HOH C 15 615 677 HOH HOH . Y 12 HOH C 16 616 732 HOH HOH . Y 12 HOH C 17 617 894 HOH HOH . Y 12 HOH C 18 618 796 HOH HOH . Y 12 HOH C 19 619 739 HOH HOH . Y 12 HOH C 20 620 744 HOH HOH . Y 12 HOH C 21 621 664 HOH HOH . Y 12 HOH C 22 622 714 HOH HOH . Y 12 HOH C 23 623 851 HOH HOH . Y 12 HOH C 24 624 748 HOH HOH . Y 12 HOH C 25 625 737 HOH HOH . Y 12 HOH C 26 626 906 HOH HOH . Y 12 HOH C 27 627 740 HOH HOH . Y 12 HOH C 28 628 659 HOH HOH . Y 12 HOH C 29 629 742 HOH HOH . Y 12 HOH C 30 630 910 HOH HOH . Y 12 HOH C 31 631 701 HOH HOH . Y 12 HOH C 32 632 698 HOH HOH . Y 12 HOH C 33 633 769 HOH HOH . Y 12 HOH C 34 634 753 HOH HOH . Y 12 HOH C 35 635 792 HOH HOH . Y 12 HOH C 36 636 723 HOH HOH . Y 12 HOH C 37 637 721 HOH HOH . Y 12 HOH C 38 638 725 HOH HOH . Y 12 HOH C 39 639 694 HOH HOH . Y 12 HOH C 40 640 893 HOH HOH . Y 12 HOH C 41 641 809 HOH HOH . Y 12 HOH C 42 642 655 HOH HOH . Y 12 HOH C 43 643 757 HOH HOH . Y 12 HOH C 44 644 764 HOH HOH . Y 12 HOH C 45 645 889 HOH HOH . Y 12 HOH C 46 646 806 HOH HOH . Y 12 HOH C 47 647 789 HOH HOH . Y 12 HOH C 48 648 763 HOH HOH . Y 12 HOH C 49 649 800 HOH HOH . Y 12 HOH C 50 650 991 HOH HOH . Y 12 HOH C 51 651 868 HOH HOH . Y 12 HOH C 52 652 750 HOH HOH . Y 12 HOH C 53 653 803 HOH HOH . Y 12 HOH C 54 654 888 HOH HOH . Y 12 HOH C 55 655 923 HOH HOH . Y 12 HOH C 56 656 818 HOH HOH . Y 12 HOH C 57 657 751 HOH HOH . Y 12 HOH C 58 658 1557 HOH HOH . Y 12 HOH C 59 659 667 HOH HOH . Y 12 HOH C 60 660 936 HOH HOH . Y 12 HOH C 61 661 971 HOH HOH . Y 12 HOH C 62 662 738 HOH HOH . Y 12 HOH C 63 663 776 HOH HOH . Y 12 HOH C 64 664 837 HOH HOH . Y 12 HOH C 65 665 822 HOH HOH . Y 12 HOH C 66 666 811 HOH HOH . Y 12 HOH C 67 667 807 HOH HOH . Y 12 HOH C 68 668 747 HOH HOH . Y 12 HOH C 69 669 847 HOH HOH . Y 12 HOH C 70 670 955 HOH HOH . Y 12 HOH C 71 671 797 HOH HOH . Y 12 HOH C 72 672 787 HOH HOH . Y 12 HOH C 73 673 835 HOH HOH . Y 12 HOH C 74 674 775 HOH HOH . Y 12 HOH C 75 675 749 HOH HOH . Y 12 HOH C 76 676 670 HOH HOH . Y 12 HOH C 77 677 998 HOH HOH . Y 12 HOH C 78 678 848 HOH HOH . Y 12 HOH C 79 679 872 HOH HOH . Y 12 HOH C 80 680 843 HOH HOH . Y 12 HOH C 81 681 710 HOH HOH . Y 12 HOH C 82 682 882 HOH HOH . Y 12 HOH C 83 683 1041 HOH HOH . Y 12 HOH C 84 684 801 HOH HOH . Y 12 HOH C 85 685 909 HOH HOH . Y 12 HOH C 86 686 874 HOH HOH . Y 12 HOH C 87 687 834 HOH HOH . Y 12 HOH C 88 688 979 HOH HOH . Y 12 HOH C 89 689 913 HOH HOH . Y 12 HOH C 90 690 883 HOH HOH . Y 12 HOH C 91 691 938 HOH HOH . Y 12 HOH C 92 692 995 HOH HOH . Y 12 HOH C 93 693 885 HOH HOH . Y 12 HOH C 94 694 1005 HOH HOH . Y 12 HOH C 95 695 833 HOH HOH . Y 12 HOH C 96 696 1016 HOH HOH . Y 12 HOH C 97 697 953 HOH HOH . Y 12 HOH C 98 698 762 HOH HOH . Y 12 HOH C 99 699 937 HOH HOH . Y 12 HOH C 100 700 972 HOH HOH . Y 12 HOH C 101 701 1024 HOH HOH . Y 12 HOH C 102 702 821 HOH HOH . Y 12 HOH C 103 703 898 HOH HOH . Y 12 HOH C 104 704 903 HOH HOH . Y 12 HOH C 105 705 1027 HOH HOH . Y 12 HOH C 106 706 928 HOH HOH . Y 12 HOH C 107 707 924 HOH HOH . Y 12 HOH C 108 708 986 HOH HOH . Y 12 HOH C 109 709 1019 HOH HOH . Y 12 HOH C 110 710 1002 HOH HOH . Y 12 HOH C 111 711 977 HOH HOH . Y 12 HOH C 112 712 973 HOH HOH . Y 12 HOH C 113 713 1000 HOH HOH . Y 12 HOH C 114 714 1070 HOH HOH . Y 12 HOH C 115 715 1054 HOH HOH . Y 12 HOH C 116 716 1012 HOH HOH . Y 12 HOH C 117 717 1056 HOH HOH . Y 12 HOH C 118 718 1025 HOH HOH . Y 12 HOH C 119 719 1060 HOH HOH . Y 12 HOH C 120 720 943 HOH HOH . Y 12 HOH C 121 721 1053 HOH HOH . Y 12 HOH C 122 722 1048 HOH HOH . Y 12 HOH C 123 723 1090 HOH HOH . Y 12 HOH C 124 724 1082 HOH HOH . Y 12 HOH C 125 725 1095 HOH HOH . Z 12 HOH D 1 601 1211 HOH HOH . Z 12 HOH D 2 602 1099 HOH HOH . Z 12 HOH D 3 603 696 HOH HOH . Z 12 HOH D 4 604 1191 HOH HOH . Z 12 HOH D 5 605 1220 HOH HOH . Z 12 HOH D 6 606 1144 HOH HOH . Z 12 HOH D 7 607 1202 HOH HOH . Z 12 HOH D 8 608 1288 HOH HOH . Z 12 HOH D 9 609 1234 HOH HOH . Z 12 HOH D 10 610 1257 HOH HOH . Z 12 HOH D 11 611 1237 HOH HOH . Z 12 HOH D 12 612 1258 HOH HOH . Z 12 HOH D 13 613 1180 HOH HOH . Z 12 HOH D 14 614 1222 HOH HOH . Z 12 HOH D 15 615 1250 HOH HOH . Z 12 HOH D 16 616 1304 HOH HOH . Z 12 HOH D 17 617 1277 HOH HOH . Z 12 HOH D 18 618 1232 HOH HOH . AA 12 HOH E 1 301 379 HOH HOH . AA 12 HOH E 2 302 1391 HOH HOH . AA 12 HOH E 3 303 393 HOH HOH . AA 12 HOH E 4 304 1340 HOH HOH . AA 12 HOH E 5 305 808 HOH HOH . AA 12 HOH E 6 306 577 HOH HOH . BA 12 HOH F 1 501 1485 HOH HOH . BA 12 HOH F 2 502 1537 HOH HOH . BA 12 HOH F 3 503 1486 HOH HOH . BA 12 HOH F 4 504 1473 HOH HOH . BA 12 HOH F 5 505 1474 HOH HOH . BA 12 HOH F 6 506 1506 HOH HOH . BA 12 HOH F 7 507 1544 HOH HOH . BA 12 HOH F 8 508 1542 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . R 8 25.791 -9.392 -43.662 1 91.5 ? PB GDP 501 D 1 HETATM 2 O O1B GDP . . . R 8 24.987 -8.814 -44.803 1 90.51 ? O1B GDP 501 D 1 HETATM 3 O O2B GDP . . . R 8 26.635 -8.303 -43.048 1 98.04 ? O2B GDP 501 D 1 HETATM 4 O O3B GDP . . . R 8 26.704 -10.488 -44.156 1 92 ? O3B GDP 501 D 1 HETATM 5 O O3A GDP . . . R 8 24.801 -9.988 -42.54 1 93.94 ? O3A GDP 501 D 1 HETATM 6 P PA GDP . . . R 8 23.375 -10.63 -42.924 1 86.04 ? PA GDP 501 D 1 HETATM 7 O O1A GDP . . . R 8 23.5 -11.573 -44.097 1 98.16 ? O1A GDP 501 D 1 HETATM 8 O O2A GDP . . . R 8 22.368 -9.542 -43.214 1 83.17 ? O2A GDP 501 D 1 HETATM 9 O O5' GDP . . . R 8 22.977 -11.423 -41.582 1 88.27 ? O5' GDP 501 D 1 HETATM 10 C C5' GDP . . . R 8 22.283 -12.665 -41.642 1 86.42 ? C5' GDP 501 D 1 HETATM 11 C C4' GDP . . . R 8 21.276 -12.719 -40.506 1 82.76 ? C4' GDP 501 D 1 HETATM 12 O O4' GDP . . . R 8 20.552 -11.493 -40.523 1 86.47 ? O4' GDP 501 D 1 HETATM 13 C C3' GDP . . . R 8 20.271 -13.833 -40.725 1 91.95 ? C3' GDP 501 D 1 HETATM 14 O O3' GDP . . . R 8 20.054 -14.516 -39.486 1 96.96 ? O3' GDP 501 D 1 HETATM 15 C C2' GDP . . . R 8 18.996 -13.149 -41.174 1 88.41 ? C2' GDP 501 D 1 HETATM 16 O O2' GDP . . . R 8 17.852 -13.76 -40.573 1 97.42 ? O2' GDP 501 D 1 HETATM 17 C C1' GDP . . . R 8 19.151 -11.718 -40.695 1 85.54 ? C1' GDP 501 D 1 HETATM 18 N N9 GDP . . . R 8 18.621 -10.751 -41.684 1 82.28 ? N9 GDP 501 D 1 HETATM 19 C C8 GDP . . . R 8 19.15 -10.477 -42.891 1 82.3 ? C8 GDP 501 D 1 HETATM 20 N N7 GDP . . . R 8 18.424 -9.529 -43.541 1 83.09 ? N7 GDP 501 D 1 HETATM 21 C C5 GDP . . . R 8 17.409 -9.174 -42.73 1 86.43 ? C5 GDP 501 D 1 HETATM 22 C C6 GDP . . . R 8 16.272 -8.227 -42.788 1 82.9 ? C6 GDP 501 D 1 HETATM 23 O O6 GDP . . . R 8 16.081 -7.505 -43.788 1 80.08 ? O6 GDP 501 D 1 HETATM 24 N N1 GDP . . . R 8 15.454 -8.167 -41.731 1 86.14 ? N1 GDP 501 D 1 HETATM 25 C C2 GDP . . . R 8 15.631 -8.93 -40.636 1 82.01 ? C2 GDP 501 D 1 HETATM 26 N N2 GDP . . . R 8 14.757 -8.81 -39.609 1 82.51 ? N2 GDP 501 D 1 HETATM 27 N N3 GDP . . . R 8 16.649 -9.817 -40.515 1 81.4 ? N3 GDP 501 D 1 HETATM 28 C C4 GDP . . . R 8 17.549 -9.98 -41.508 1 83.79 ? C4 GDP 501 D 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #