data_5S5V # _model_server_result.job_id M49oObZpsucctohAVCKKVA _model_server_result.datetime_utc '2024-11-23 21:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":501}' # _entry.id 5S5V # _exptl.entry_id 5S5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5S5V _cell.length_a 105.23 _cell.length_b 159.54 _cell.length_c 179.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 H MG MG . A MG 502 1_555 W O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc11 H MG MG . A MG 502 1_555 W O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc12 H MG MG . A MG 502 1_555 W O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc13 J CA CA . A CA 504 1_555 W O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc15 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc16 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc17 L MG MG . B MG 502 1_555 X O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc18 L MG MG . B MG 502 1_555 X O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? metalc ? metalc19 L MG MG . B MG 502 1_555 X O HOH . B HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc20 L MG MG . B MG 502 1_555 Y O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc21 M CA CA . B CA 503 4_455 C OE1 GLU 284 C GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc22 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc23 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc24 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc25 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc26 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc27 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc28 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc29 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc30 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc31 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc32 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc33 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc34 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc35 R CA CA . C CA 503 1_555 Y O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc36 D OE1 GLN 11 D GLN 11 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc37 S O1A GDP . D GDP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc38 T MG MG . D MG 502 1_555 Z O HOH . D HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc39 F OE2 GLU 331 F GLU 331 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc40 F OD1 ASN 333 F ASN 333 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc41 U O3G ACP . F ACP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc42 U O1B ACP . F ACP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 134 n n PB O2B GDP sing 135 n n PB O3B GDP sing 136 n n PB O3A GDP sing 137 n n O2B HOB2 GDP sing 138 n n O3B HOB3 GDP sing 139 n n O3A PA GDP sing 140 n n PA O1A GDP doub 141 n n PA O2A GDP sing 142 n n PA O5' GDP sing 143 n n O2A HOA2 GDP sing 144 n n O5' C5' GDP sing 145 n n C5' C4' GDP sing 146 n n C5' H5' GDP sing 147 n n C5' "H5''" GDP sing 148 n n C4' O4' GDP sing 149 n n C4' C3' GDP sing 150 n n C4' H4' GDP sing 151 n n O4' C1' GDP sing 152 n n C3' O3' GDP sing 153 n n C3' C2' GDP sing 154 n n C3' H3' GDP sing 155 n n O3' HO3' GDP sing 156 n n C2' O2' GDP sing 157 n n C2' C1' GDP sing 158 n n C2' H2' GDP sing 159 n n O2' HO2' GDP sing 160 n n C1' N9 GDP sing 161 n n C1' H1' GDP sing 162 n n N9 C8 GDP sing 163 n y N9 C4 GDP sing 164 n y C8 N7 GDP doub 165 n y C8 H8 GDP sing 166 n n N7 C5 GDP sing 167 n y C5 C6 GDP sing 168 n n C5 C4 GDP doub 169 n y C6 O6 GDP doub 170 n n C6 N1 GDP sing 171 n n N1 C2 GDP sing 172 n n N1 HN1 GDP sing 173 n n C2 N2 GDP sing 174 n n C2 N3 GDP doub 175 n n N2 HN21 GDP sing 176 n n N2 HN22 GDP sing 177 n n N3 C4 GDP sing 178 n n # _atom_sites.entry_id 5S5V _atom_sites.fract_transf_matrix[1][1] 0.009503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 7 CA A 1 504 504 CA CA . K 8 GDP B 1 501 501 GDP GDP . L 6 MG B 1 502 502 MG MG . M 7 CA B 1 503 503 CA CA . N 9 MES B 1 504 504 MES MES . O 10 HR8 B 1 505 601 HR8 DRG . P 5 GTP C 1 501 501 GTP GTP . Q 6 MG C 1 502 502 MG MG . R 7 CA C 1 503 503 CA CA . S 8 GDP D 1 501 501 GDP GDP . T 6 MG D 1 502 502 MG MG . U 11 ACP F 1 401 401 ACP ACP . V 6 MG F 1 402 402 MG MG . W 12 HOH A 1 601 40 HOH HOH . W 12 HOH A 2 602 55 HOH HOH . W 12 HOH A 3 603 180 HOH HOH . W 12 HOH A 4 604 78 HOH HOH . W 12 HOH A 5 605 263 HOH HOH . W 12 HOH A 6 606 161 HOH HOH . W 12 HOH A 7 607 47 HOH HOH . W 12 HOH A 8 608 29 HOH HOH . W 12 HOH A 9 609 118 HOH HOH . W 12 HOH A 10 610 60 HOH HOH . W 12 HOH A 11 611 1340 HOH HOH . W 12 HOH A 12 612 719 HOH HOH . W 12 HOH A 13 613 126 HOH HOH . W 12 HOH A 14 614 258 HOH HOH . W 12 HOH A 15 615 213 HOH HOH . W 12 HOH A 16 616 194 HOH HOH . W 12 HOH A 17 617 208 HOH HOH . W 12 HOH A 18 618 141 HOH HOH . X 12 HOH B 1 601 333 HOH HOH . X 12 HOH B 2 602 330 HOH HOH . X 12 HOH B 3 603 1538 HOH HOH . X 12 HOH B 4 604 363 HOH HOH . X 12 HOH B 5 605 505 HOH HOH . X 12 HOH B 6 606 361 HOH HOH . X 12 HOH B 7 607 434 HOH HOH . X 12 HOH B 8 608 326 HOH HOH . X 12 HOH B 9 609 375 HOH HOH . X 12 HOH B 10 610 362 HOH HOH . X 12 HOH B 11 611 508 HOH HOH . X 12 HOH B 12 612 382 HOH HOH . X 12 HOH B 13 613 526 HOH HOH . X 12 HOH B 14 614 479 HOH HOH . X 12 HOH B 15 615 390 HOH HOH . X 12 HOH B 16 616 470 HOH HOH . X 12 HOH B 17 617 432 HOH HOH . X 12 HOH B 18 618 428 HOH HOH . X 12 HOH B 19 619 351 HOH HOH . X 12 HOH B 20 620 412 HOH HOH . X 12 HOH B 21 621 481 HOH HOH . X 12 HOH B 22 622 503 HOH HOH . X 12 HOH B 23 623 438 HOH HOH . X 12 HOH B 24 624 469 HOH HOH . X 12 HOH B 25 625 461 HOH HOH . X 12 HOH B 26 626 451 HOH HOH . X 12 HOH B 27 627 405 HOH HOH . X 12 HOH B 28 628 430 HOH HOH . X 12 HOH B 29 629 487 HOH HOH . X 12 HOH B 30 630 825 HOH HOH . X 12 HOH B 31 631 454 HOH HOH . X 12 HOH B 32 632 345 HOH HOH . X 12 HOH B 33 633 495 HOH HOH . X 12 HOH B 34 634 534 HOH HOH . X 12 HOH B 35 635 528 HOH HOH . X 12 HOH B 36 636 540 HOH HOH . X 12 HOH B 37 637 290 HOH HOH . X 12 HOH B 38 638 597 HOH HOH . X 12 HOH B 39 639 297 HOH HOH . X 12 HOH B 40 640 327 HOH HOH . X 12 HOH B 41 641 596 HOH HOH . X 12 HOH B 42 642 1064 HOH HOH . X 12 HOH B 43 643 610 HOH HOH . Y 12 HOH C 1 601 739 HOH HOH . Y 12 HOH C 2 602 641 HOH HOH . Y 12 HOH C 3 603 660 HOH HOH . Y 12 HOH C 4 604 723 HOH HOH . Y 12 HOH C 5 605 643 HOH HOH . Y 12 HOH C 6 606 894 HOH HOH . Y 12 HOH C 7 607 730 HOH HOH . Y 12 HOH C 8 608 800 HOH HOH . Y 12 HOH C 9 609 763 HOH HOH . Y 12 HOH C 10 610 677 HOH HOH . Y 12 HOH C 11 611 663 HOH HOH . Y 12 HOH C 12 612 750 HOH HOH . Y 12 HOH C 13 613 732 HOH HOH . Y 12 HOH C 14 614 705 HOH HOH . Y 12 HOH C 15 615 770 HOH HOH . Y 12 HOH C 16 616 698 HOH HOH . Y 12 HOH C 17 617 721 HOH HOH . Y 12 HOH C 18 618 659 HOH HOH . Y 12 HOH C 19 619 669 HOH HOH . Y 12 HOH C 20 620 692 HOH HOH . Y 12 HOH C 21 621 791 HOH HOH . Y 12 HOH C 22 622 714 HOH HOH . Y 12 HOH C 23 623 868 HOH HOH . Y 12 HOH C 24 624 664 HOH HOH . Y 12 HOH C 25 625 645 HOH HOH . Y 12 HOH C 26 626 744 HOH HOH . Y 12 HOH C 27 627 848 HOH HOH . Y 12 HOH C 28 628 753 HOH HOH . Y 12 HOH C 29 629 746 HOH HOH . Y 12 HOH C 30 630 888 HOH HOH . Y 12 HOH C 31 631 906 HOH HOH . Y 12 HOH C 32 632 955 HOH HOH . Y 12 HOH C 33 633 747 HOH HOH . Y 12 HOH C 34 634 819 HOH HOH . Y 12 HOH C 35 635 913 HOH HOH . Y 12 HOH C 36 636 889 HOH HOH . Y 12 HOH C 37 637 833 HOH HOH . Y 12 HOH C 38 638 765 HOH HOH . Y 12 HOH C 39 639 735 HOH HOH . Y 12 HOH C 40 640 676 HOH HOH . Y 12 HOH C 41 641 909 HOH HOH . Y 12 HOH C 42 642 817 HOH HOH . Y 12 HOH C 43 643 797 HOH HOH . Y 12 HOH C 44 644 742 HOH HOH . Y 12 HOH C 45 645 811 HOH HOH . Y 12 HOH C 46 646 701 HOH HOH . Y 12 HOH C 47 647 893 HOH HOH . Y 12 HOH C 48 648 953 HOH HOH . Y 12 HOH C 49 649 931 HOH HOH . Y 12 HOH C 50 650 991 HOH HOH . Y 12 HOH C 51 651 634 HOH HOH . Y 12 HOH C 52 652 801 HOH HOH . Y 12 HOH C 53 653 689 HOH HOH . Y 12 HOH C 54 654 764 HOH HOH . Y 12 HOH C 55 655 928 HOH HOH . Y 12 HOH C 56 656 683 HOH HOH . Y 12 HOH C 57 657 874 HOH HOH . Y 12 HOH C 58 658 807 HOH HOH . Y 12 HOH C 59 659 830 HOH HOH . Y 12 HOH C 60 660 963 HOH HOH . Y 12 HOH C 61 661 1016 HOH HOH . Y 12 HOH C 62 662 910 HOH HOH . Y 12 HOH C 63 663 936 HOH HOH . Y 12 HOH C 64 664 915 HOH HOH . Y 12 HOH C 65 665 837 HOH HOH . Y 12 HOH C 66 666 956 HOH HOH . Y 12 HOH C 67 667 1054 HOH HOH . Y 12 HOH C 68 668 923 HOH HOH . Y 12 HOH C 69 669 901 HOH HOH . Y 12 HOH C 70 670 852 HOH HOH . Y 12 HOH C 71 671 1041 HOH HOH . Y 12 HOH C 72 672 979 HOH HOH . Y 12 HOH C 73 673 995 HOH HOH . Y 12 HOH C 74 674 1002 HOH HOH . Y 12 HOH C 75 675 938 HOH HOH . Y 12 HOH C 76 676 937 HOH HOH . Y 12 HOH C 77 677 1024 HOH HOH . Y 12 HOH C 78 678 1027 HOH HOH . Y 12 HOH C 79 679 999 HOH HOH . Y 12 HOH C 80 680 972 HOH HOH . Y 12 HOH C 81 681 977 HOH HOH . Y 12 HOH C 82 682 924 HOH HOH . Y 12 HOH C 83 683 943 HOH HOH . Y 12 HOH C 84 684 980 HOH HOH . Y 12 HOH C 85 685 1000 HOH HOH . Y 12 HOH C 86 686 1025 HOH HOH . Y 12 HOH C 87 687 1053 HOH HOH . Y 12 HOH C 88 688 1065 HOH HOH . Y 12 HOH C 89 689 1048 HOH HOH . Y 12 HOH C 90 690 1095 HOH HOH . Z 12 HOH D 1 1101 1101 HOH HOH . Z 12 HOH D 2 1102 1200 HOH HOH . Z 12 HOH D 3 1103 1142 HOH HOH . Z 12 HOH D 4 1104 1220 HOH HOH . Z 12 HOH D 5 1105 1247 HOH HOH . Z 12 HOH D 6 1106 1234 HOH HOH . Z 12 HOH D 7 1107 1222 HOH HOH . Z 12 HOH D 8 1108 1193 HOH HOH . Z 12 HOH D 9 1109 1257 HOH HOH . Z 12 HOH D 10 1110 1274 HOH HOH . Z 12 HOH D 11 1111 1245 HOH HOH . Z 12 HOH D 12 1112 1180 HOH HOH . AA 12 HOH E 1 201 551 HOH HOH . AA 12 HOH E 2 202 577 HOH HOH . BA 12 HOH F 1 501 1537 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . S 8 25.484 -8.912 -43.849 1 96.58 ? PB GDP 501 D 1 HETATM 2 O O1B GDP . . . S 8 24.708 -7.967 -44.734 1 95.92 ? O1B GDP 501 D 1 HETATM 3 O O2B GDP . . . S 8 26.574 -8.15 -43.145 1 101.84 ? O2B GDP 501 D 1 HETATM 4 O O3B GDP . . . S 8 26.118 -10.013 -44.666 1 102.36 ? O3B GDP 501 D 1 HETATM 5 O O3A GDP . . . S 8 24.514 -9.547 -42.735 1 101.24 ? O3A GDP 501 D 1 HETATM 6 P PA GDP . . . S 8 23.03 -10.072 -43.076 1 97.44 ? PA GDP 501 D 1 HETATM 7 O O1A GDP . . . S 8 23.037 -11.053 -44.223 1 104.65 ? O1A GDP 501 D 1 HETATM 8 O O2A GDP . . . S 8 22.102 -8.915 -43.37 1 93.94 ? O2A GDP 501 D 1 HETATM 9 O O5' GDP . . . S 8 22.633 -10.796 -41.695 1 98.76 ? O5' GDP 501 D 1 HETATM 10 C C5' GDP . . . S 8 21.992 -12.066 -41.684 1 98.65 ? C5' GDP 501 D 1 HETATM 11 C C4' GDP . . . S 8 20.956 -12.057 -40.577 1 95.74 ? C4' GDP 501 D 1 HETATM 12 O O4' GDP . . . S 8 20.246 -10.825 -40.679 1 92.8 ? O4' GDP 501 D 1 HETATM 13 C C3' GDP . . . S 8 19.942 -13.17 -40.762 1 97.07 ? C3' GDP 501 D 1 HETATM 14 O O3' GDP . . . S 8 19.773 -13.858 -39.519 1 100.84 ? O3' GDP 501 D 1 HETATM 15 C C2' GDP . . . S 8 18.648 -12.488 -41.158 1 93.26 ? C2' GDP 501 D 1 HETATM 16 O O2' GDP . . . S 8 17.541 -13.07 -40.468 1 99.78 ? O2' GDP 501 D 1 HETATM 17 C C1' GDP . . . S 8 18.838 -11.046 -40.729 1 91.23 ? C1' GDP 501 D 1 HETATM 18 N N9 GDP . . . S 8 18.247 -10.091 -41.693 1 90.73 ? N9 GDP 501 D 1 HETATM 19 C C8 GDP . . . S 8 18.712 -9.839 -42.927 1 93.26 ? C8 GDP 501 D 1 HETATM 20 N N7 GDP . . . S 8 17.958 -8.9 -43.552 1 93.01 ? N7 GDP 501 D 1 HETATM 21 C C5 GDP . . . S 8 16.991 -8.529 -42.698 1 89.79 ? C5 GDP 501 D 1 HETATM 22 C C6 GDP . . . S 8 15.861 -7.577 -42.723 1 90.52 ? C6 GDP 501 D 1 HETATM 23 O O6 GDP . . . S 8 15.64 -6.881 -43.735 1 92.4 ? O6 GDP 501 D 1 HETATM 24 N N1 GDP . . . S 8 15.09 -7.488 -41.632 1 92.77 ? N1 GDP 501 D 1 HETATM 25 C C2 GDP . . . S 8 15.314 -8.231 -40.529 1 89.81 ? C2 GDP 501 D 1 HETATM 26 N N2 GDP . . . S 8 14.487 -8.084 -39.467 1 88.36 ? N2 GDP 501 D 1 HETATM 27 N N3 GDP . . . S 8 16.333 -9.125 -40.437 1 91.09 ? N3 GDP 501 D 1 HETATM 28 C C4 GDP . . . S 8 17.187 -9.313 -41.471 1 92.33 ? C4 GDP 501 D 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 28 #