data_5S64
#
_model_server_result.job_id            u9lCveQLxgpcKyStXdwW8A 
_model_server_result.datetime_utc      '2024-12-23 05:30:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5s64 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":503}' 
#
_entry.id    5S64 
#
_exptl.entry_id    5S64 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5S64 
_cell.length_a            104.62 
_cell.length_b            158.42 
_cell.length_c            179.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5S64 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 J N N 
? 7 M N N 
? 7 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 X O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 X O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc12 H MG MG . A MG 502 1_555 X O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc13 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc14 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc15 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc16 L MG MG . B MG 502 1_555 Y O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc17 L MG MG . B MG 502 1_555 Y O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc18 L MG MG . B MG 502 1_555 Y O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc19 L MG MG . B MG 502 1_555 Z O HOH . C HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc20 M CA CA . B CA 503 4_455 C OE1 GLU 284 C GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc21 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc22 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc23 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc24 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc25 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc26 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc27 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc28 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc29 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc30 Q MG MG . C MG 502 1_555 Z O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
metalc ? metalc31 Q MG MG . C MG 502 1_555 Z O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc32 Q MG MG . C MG 502 1_555 Z O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc33 R CA CA . C CA 503 1_555 Z O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc34 D OE1 GLN 11 D GLN 11 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc35 T O1A GDP . D GDP 501 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc36 F OE2 GLU 331 F GLU 331 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? 
metalc ? metalc37 V O3G ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc38 V O1B ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5S64 
_atom_sites.fract_transf_matrix[1][1]    0.009558 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006312 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005556 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 7 CA A 1 504 504 CA CA . 
K 8 GDP B 1 501 501 GDP GDP . 
L 6 MG B 1 502 502 MG MG . 
M 7 CA B 1 503 503 CA CA . 
N 9 MES B 1 504 504 MES MES . 
O 10 TVP B 1 505 1 TVP DRG . 
P 5 GTP C 1 501 501 GTP GTP . 
Q 6 MG C 1 502 502 MG MG . 
R 7 CA C 1 503 503 CA CA . 
S 10 TVP C 1 504 2 TVP DRG . 
T 8 GDP D 1 501 501 GDP GDP . 
U 6 MG D 1 502 502 MG MG . 
V 11 ACP F 1 401 401 ACP ACP . 
W 6 MG F 1 402 402 MG MG . 
X 12 HOH A 1 601 93 HOH HOH . 
X 12 HOH A 2 602 180 HOH HOH . 
X 12 HOH A 3 603 78 HOH HOH . 
X 12 HOH A 4 604 126 HOH HOH . 
X 12 HOH A 5 605 167 HOH HOH . 
X 12 HOH A 6 606 40 HOH HOH . 
X 12 HOH A 7 607 87 HOH HOH . 
X 12 HOH A 8 608 65 HOH HOH . 
X 12 HOH A 9 609 135 HOH HOH . 
X 12 HOH A 10 610 719 HOH HOH . 
X 12 HOH A 11 611 267 HOH HOH . 
X 12 HOH A 12 612 273 HOH HOH . 
X 12 HOH A 13 613 290 HOH HOH . 
Y 12 HOH B 1 601 330 HOH HOH . 
Y 12 HOH B 2 602 362 HOH HOH . 
Y 12 HOH B 3 603 333 HOH HOH . 
Y 12 HOH B 4 604 347 HOH HOH . 
Y 12 HOH B 5 605 440 HOH HOH . 
Y 12 HOH B 6 606 345 HOH HOH . 
Y 12 HOH B 7 607 526 HOH HOH . 
Y 12 HOH B 8 608 428 HOH HOH . 
Y 12 HOH B 9 609 817 HOH HOH . 
Y 12 HOH B 10 610 1538 HOH HOH . 
Y 12 HOH B 11 611 432 HOH HOH . 
Y 12 HOH B 12 612 390 HOH HOH . 
Y 12 HOH B 13 613 479 HOH HOH . 
Y 12 HOH B 14 614 1362 HOH HOH . 
Y 12 HOH B 15 615 509 HOH HOH . 
Y 12 HOH B 16 616 503 HOH HOH . 
Y 12 HOH B 17 617 438 HOH HOH . 
Y 12 HOH B 18 618 469 HOH HOH . 
Y 12 HOH B 19 619 534 HOH HOH . 
Y 12 HOH B 20 620 436 HOH HOH . 
Y 12 HOH B 21 621 528 HOH HOH . 
Y 12 HOH B 22 622 327 HOH HOH . 
Y 12 HOH B 23 623 372 HOH HOH . 
Y 12 HOH B 24 624 610 HOH HOH . 
Z 12 HOH C 1 601 888 HOH HOH . 
Z 12 HOH C 2 602 746 HOH HOH . 
Z 12 HOH C 3 603 641 HOH HOH . 
Z 12 HOH C 4 604 705 HOH HOH . 
Z 12 HOH C 5 605 677 HOH HOH . 
Z 12 HOH C 6 606 732 HOH HOH . 
Z 12 HOH C 7 607 837 HOH HOH . 
Z 12 HOH C 8 608 660 HOH HOH . 
Z 12 HOH C 9 609 723 HOH HOH . 
Z 12 HOH C 10 610 735 HOH HOH . 
Z 12 HOH C 11 611 669 HOH HOH . 
Z 12 HOH C 12 612 664 HOH HOH . 
Z 12 HOH C 13 613 721 HOH HOH . 
Z 12 HOH C 14 614 714 HOH HOH . 
Z 12 HOH C 15 615 923 HOH HOH . 
Z 12 HOH C 16 616 747 HOH HOH . 
Z 12 HOH C 17 617 645 HOH HOH . 
Z 12 HOH C 18 618 906 HOH HOH . 
Z 12 HOH C 19 619 914 HOH HOH . 
Z 12 HOH C 20 620 809 HOH HOH . 
Z 12 HOH C 21 621 753 HOH HOH . 
Z 12 HOH C 22 622 689 HOH HOH . 
Z 12 HOH C 23 623 848 HOH HOH . 
Z 12 HOH C 24 624 819 HOH HOH . 
Z 12 HOH C 25 625 698 HOH HOH . 
Z 12 HOH C 26 626 910 HOH HOH . 
Z 12 HOH C 27 627 792 HOH HOH . 
Z 12 HOH C 28 628 801 HOH HOH . 
Z 12 HOH C 29 629 909 HOH HOH . 
Z 12 HOH C 30 630 751 HOH HOH . 
Z 12 HOH C 31 631 806 HOH HOH . 
Z 12 HOH C 32 632 938 HOH HOH . 
Z 12 HOH C 33 633 1016 HOH HOH . 
Z 12 HOH C 34 634 764 HOH HOH . 
Z 12 HOH C 35 635 991 HOH HOH . 
Z 12 HOH C 36 636 872 HOH HOH . 
Z 12 HOH C 37 637 998 HOH HOH . 
Z 12 HOH C 38 638 956 HOH HOH . 
Z 12 HOH C 39 639 928 HOH HOH . 
Z 12 HOH C 40 640 787 HOH HOH . 
Z 12 HOH C 41 641 874 HOH HOH . 
Z 12 HOH C 42 642 979 HOH HOH . 
Z 12 HOH C 43 643 1000 HOH HOH . 
Z 12 HOH C 44 644 913 HOH HOH . 
Z 12 HOH C 45 645 995 HOH HOH . 
Z 12 HOH C 46 646 833 HOH HOH . 
Z 12 HOH C 47 647 953 HOH HOH . 
Z 12 HOH C 48 648 903 HOH HOH . 
Z 12 HOH C 49 649 1376 HOH HOH . 
Z 12 HOH C 50 650 1089 HOH HOH . 
Z 12 HOH C 51 651 1065 HOH HOH . 
Z 12 HOH C 52 652 977 HOH HOH . 
Z 12 HOH C 53 653 1048 HOH HOH . 
Z 12 HOH C 54 654 936 HOH HOH . 
Z 12 HOH C 55 655 1095 HOH HOH . 
AA 12 HOH D 1 601 1099 HOH HOH . 
AA 12 HOH D 2 602 1222 HOH HOH . 
AA 12 HOH D 3 603 1274 HOH HOH . 
BA 12 HOH F 1 501 1485 HOH HOH . 
BA 12 HOH F 2 502 1537 HOH HOH . 
BA 12 HOH F 3 503 1257 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               32.817 
_atom_site.Cartn_y               48.214 
_atom_site.Cartn_z               5.858 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        117.1 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#