data_5S8C # _model_server_result.job_id H0JuYvxDwXMs5yHSeSU6aw _model_server_result.datetime_utc '2025-01-25 07:15:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S8C # _exptl.entry_id 5S8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.177 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1-methylbenzotriazol-5-yl)methanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.14 _cell.angle_gamma 90 _cell.entry_id 5S8C _cell.length_a 83.1 _cell.length_b 27.51 _cell.length_c 56.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 N3 O' _chem_comp.formula_weight 163.177 _chem_comp.id RYD _chem_comp.mon_nstd_flag . _chem_comp.name (1-methylbenzotriazol-5-yl)methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C5 RYD sing 277 n n C5 C4 RYD sing 278 n n C4 C6 RYD doub 279 n y C4 C3 RYD sing 280 n y C6 C7 RYD sing 281 n y C3 C2 RYD doub 282 n y C7 N1 RYD sing 283 n y C7 C1 RYD doub 284 n y C2 C1 RYD sing 285 n y N1 N2 RYD doub 286 n y C1 N RYD sing 287 n y N2 N RYD sing 288 n y N C RYD sing 289 n n C5 H1 RYD sing 290 n n C5 H2 RYD sing 291 n n C6 H3 RYD sing 292 n n O H4 RYD sing 293 n n C3 H5 RYD sing 294 n n C2 H6 RYD sing 295 n n C H7 RYD sing 296 n n C H8 RYD sing 297 n n C H9 RYD sing 298 n n # _atom_sites.entry_id 5S8C _atom_sites.fract_transf_matrix[1][1] 0.012034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002152 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RYD A 1 1501 1 RYD LIG . C 3 HOH A 1 1601 174 HOH HOH . C 3 HOH A 2 1602 175 HOH HOH . C 3 HOH A 3 1603 98 HOH HOH . C 3 HOH A 4 1604 142 HOH HOH . C 3 HOH A 5 1605 85 HOH HOH . C 3 HOH A 6 1606 154 HOH HOH . C 3 HOH A 7 1607 89 HOH HOH . C 3 HOH A 8 1608 178 HOH HOH . C 3 HOH A 9 1609 149 HOH HOH . C 3 HOH A 10 1610 7 HOH HOH . C 3 HOH A 11 1611 121 HOH HOH . C 3 HOH A 12 1612 124 HOH HOH . C 3 HOH A 13 1613 173 HOH HOH . C 3 HOH A 14 1614 60 HOH HOH . C 3 HOH A 15 1615 17 HOH HOH . C 3 HOH A 16 1616 33 HOH HOH . C 3 HOH A 17 1617 162 HOH HOH . C 3 HOH A 18 1618 47 HOH HOH . C 3 HOH A 19 1619 123 HOH HOH . C 3 HOH A 20 1620 41 HOH HOH . C 3 HOH A 21 1621 20 HOH HOH . C 3 HOH A 22 1622 50 HOH HOH . C 3 HOH A 23 1623 128 HOH HOH . C 3 HOH A 24 1624 161 HOH HOH . C 3 HOH A 25 1625 108 HOH HOH . C 3 HOH A 26 1626 10 HOH HOH . C 3 HOH A 27 1627 31 HOH HOH . C 3 HOH A 28 1628 54 HOH HOH . C 3 HOH A 29 1629 70 HOH HOH . C 3 HOH A 30 1630 52 HOH HOH . C 3 HOH A 31 1631 143 HOH HOH . C 3 HOH A 32 1632 144 HOH HOH . C 3 HOH A 33 1633 25 HOH HOH . C 3 HOH A 34 1634 94 HOH HOH . C 3 HOH A 35 1635 135 HOH HOH . C 3 HOH A 36 1636 36 HOH HOH . C 3 HOH A 37 1637 1 HOH HOH . C 3 HOH A 38 1638 21 HOH HOH . C 3 HOH A 39 1639 9 HOH HOH . C 3 HOH A 40 1640 82 HOH HOH . C 3 HOH A 41 1641 160 HOH HOH . C 3 HOH A 42 1642 16 HOH HOH . C 3 HOH A 43 1643 12 HOH HOH . C 3 HOH A 44 1644 4 HOH HOH . C 3 HOH A 45 1645 3 HOH HOH . C 3 HOH A 46 1646 141 HOH HOH . C 3 HOH A 47 1647 14 HOH HOH . C 3 HOH A 48 1648 45 HOH HOH . C 3 HOH A 49 1649 130 HOH HOH . C 3 HOH A 50 1650 139 HOH HOH . C 3 HOH A 51 1651 77 HOH HOH . C 3 HOH A 52 1652 127 HOH HOH . C 3 HOH A 53 1653 55 HOH HOH . C 3 HOH A 54 1654 140 HOH HOH . C 3 HOH A 55 1655 65 HOH HOH . C 3 HOH A 56 1656 92 HOH HOH . C 3 HOH A 57 1657 74 HOH HOH . C 3 HOH A 58 1658 35 HOH HOH . C 3 HOH A 59 1659 83 HOH HOH . C 3 HOH A 60 1660 28 HOH HOH . C 3 HOH A 61 1661 5 HOH HOH . C 3 HOH A 62 1662 44 HOH HOH . C 3 HOH A 63 1663 69 HOH HOH . C 3 HOH A 64 1664 119 HOH HOH . C 3 HOH A 65 1665 93 HOH HOH . C 3 HOH A 66 1666 42 HOH HOH . C 3 HOH A 67 1667 176 HOH HOH . C 3 HOH A 68 1668 80 HOH HOH . C 3 HOH A 69 1669 84 HOH HOH . C 3 HOH A 70 1670 59 HOH HOH . C 3 HOH A 71 1671 100 HOH HOH . C 3 HOH A 72 1672 18 HOH HOH . C 3 HOH A 73 1673 71 HOH HOH . C 3 HOH A 74 1674 40 HOH HOH . C 3 HOH A 75 1675 39 HOH HOH . C 3 HOH A 76 1676 11 HOH HOH . C 3 HOH A 77 1677 158 HOH HOH . C 3 HOH A 78 1678 159 HOH HOH . C 3 HOH A 79 1679 62 HOH HOH . C 3 HOH A 80 1680 56 HOH HOH . C 3 HOH A 81 1681 137 HOH HOH . C 3 HOH A 82 1682 29 HOH HOH . C 3 HOH A 83 1683 38 HOH HOH . C 3 HOH A 84 1684 63 HOH HOH . C 3 HOH A 85 1685 96 HOH HOH . C 3 HOH A 86 1686 23 HOH HOH . C 3 HOH A 87 1687 27 HOH HOH . C 3 HOH A 88 1688 101 HOH HOH . C 3 HOH A 89 1689 58 HOH HOH . C 3 HOH A 90 1690 2 HOH HOH . C 3 HOH A 91 1691 19 HOH HOH . C 3 HOH A 92 1692 105 HOH HOH . C 3 HOH A 93 1693 6 HOH HOH . C 3 HOH A 94 1694 76 HOH HOH . C 3 HOH A 95 1695 72 HOH HOH . C 3 HOH A 96 1696 37 HOH HOH . C 3 HOH A 97 1697 32 HOH HOH . C 3 HOH A 98 1698 131 HOH HOH . C 3 HOH A 99 1699 109 HOH HOH . C 3 HOH A 100 1700 88 HOH HOH . C 3 HOH A 101 1701 132 HOH HOH . C 3 HOH A 102 1702 86 HOH HOH . C 3 HOH A 103 1703 116 HOH HOH . C 3 HOH A 104 1704 48 HOH HOH . C 3 HOH A 105 1705 49 HOH HOH . C 3 HOH A 106 1706 64 HOH HOH . C 3 HOH A 107 1707 15 HOH HOH . C 3 HOH A 108 1708 122 HOH HOH . C 3 HOH A 109 1709 67 HOH HOH . C 3 HOH A 110 1710 138 HOH HOH . C 3 HOH A 111 1711 81 HOH HOH . C 3 HOH A 112 1712 90 HOH HOH . C 3 HOH A 113 1713 134 HOH HOH . C 3 HOH A 114 1714 145 HOH HOH . C 3 HOH A 115 1715 24 HOH HOH . C 3 HOH A 116 1716 91 HOH HOH . C 3 HOH A 117 1717 22 HOH HOH . C 3 HOH A 118 1718 53 HOH HOH . C 3 HOH A 119 1719 125 HOH HOH . C 3 HOH A 120 1720 146 HOH HOH . C 3 HOH A 121 1721 75 HOH HOH . C 3 HOH A 122 1722 34 HOH HOH . C 3 HOH A 123 1723 26 HOH HOH . C 3 HOH A 124 1724 118 HOH HOH . C 3 HOH A 125 1725 126 HOH HOH . C 3 HOH A 126 1726 171 HOH HOH . C 3 HOH A 127 1727 57 HOH HOH . C 3 HOH A 128 1728 136 HOH HOH . C 3 HOH A 129 1729 13 HOH HOH . C 3 HOH A 130 1730 152 HOH HOH . C 3 HOH A 131 1731 150 HOH HOH . C 3 HOH A 132 1732 117 HOH HOH . C 3 HOH A 133 1733 155 HOH HOH . C 3 HOH A 134 1734 95 HOH HOH . C 3 HOH A 135 1735 157 HOH HOH . C 3 HOH A 136 1736 153 HOH HOH . C 3 HOH A 137 1737 120 HOH HOH . C 3 HOH A 138 1738 133 HOH HOH . C 3 HOH A 139 1739 129 HOH HOH . C 3 HOH A 140 1740 164 HOH HOH . C 3 HOH A 141 1741 166 HOH HOH . C 3 HOH A 142 1742 172 HOH HOH . C 3 HOH A 143 1743 66 HOH HOH . C 3 HOH A 144 1744 115 HOH HOH . C 3 HOH A 145 1745 8 HOH HOH . C 3 HOH A 146 1746 181 HOH HOH . C 3 HOH A 147 1747 114 HOH HOH . C 3 HOH A 148 1748 112 HOH HOH . C 3 HOH A 149 1749 179 HOH HOH . C 3 HOH A 150 1750 30 HOH HOH . C 3 HOH A 151 1751 156 HOH HOH . C 3 HOH A 152 1752 107 HOH HOH . C 3 HOH A 153 1753 61 HOH HOH . C 3 HOH A 154 1754 51 HOH HOH . C 3 HOH A 155 1755 170 HOH HOH . C 3 HOH A 156 1756 110 HOH HOH . C 3 HOH A 157 1757 104 HOH HOH . C 3 HOH A 158 1758 184 HOH HOH . C 3 HOH A 159 1759 165 HOH HOH . C 3 HOH A 160 1760 180 HOH HOH . C 3 HOH A 161 1761 68 HOH HOH . C 3 HOH A 162 1762 78 HOH HOH . C 3 HOH A 163 1763 46 HOH HOH . C 3 HOH A 164 1764 102 HOH HOH . C 3 HOH A 165 1765 73 HOH HOH . C 3 HOH A 166 1766 168 HOH HOH . C 3 HOH A 167 1767 99 HOH HOH . C 3 HOH A 168 1768 103 HOH HOH . C 3 HOH A 169 1769 113 HOH HOH . C 3 HOH A 170 1770 185 HOH HOH . C 3 HOH A 171 1771 148 HOH HOH . C 3 HOH A 172 1772 169 HOH HOH . C 3 HOH A 173 1773 43 HOH HOH . C 3 HOH A 174 1774 183 HOH HOH . C 3 HOH A 175 1775 167 HOH HOH . C 3 HOH A 176 1776 97 HOH HOH . C 3 HOH A 177 1777 177 HOH HOH . C 3 HOH A 178 1778 111 HOH HOH . C 3 HOH A 179 1779 182 HOH HOH . C 3 HOH A 180 1780 87 HOH HOH . C 3 HOH A 181 1781 79 HOH HOH . C 3 HOH A 182 1782 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RYD . . . B 2 -21.926 12.008 24.851 1 24.73 ? N1 RYD 1501 A 1 HETATM 2 C C4 RYD . . . B 2 -23.314 13.046 28.173 1 21.74 ? C4 RYD 1501 A 1 HETATM 3 C C5 RYD . . . B 2 -24.497 13.067 29.082 1 24.94 ? C5 RYD 1501 A 1 HETATM 4 C C6 RYD . . . B 2 -23.345 12.455 26.917 1 19.16 ? C6 RYD 1501 A 1 HETATM 5 C C7 RYD . . . B 2 -22.171 12.471 26.131 1 19.4 ? C7 RYD 1501 A 1 HETATM 6 O O RYD . . . B 2 -25.715 13.122 28.431 1 27.56 ? O RYD 1501 A 1 HETATM 7 C C3 RYD . . . B 2 -22.116 13.607 28.655 1 21.17 ? C3 RYD 1501 A 1 HETATM 8 C C2 RYD . . . B 2 -20.972 13.632 27.878 1 22.49 ? C2 RYD 1501 A 1 HETATM 9 C C1 RYD . . . B 2 -21.023 13.077 26.597 1 22.35 ? C1 RYD 1501 A 1 HETATM 10 N N2 RYD . . . B 2 -20.686 12.294 24.529 1 26.73 ? N2 RYD 1501 A 1 HETATM 11 N N RYD . . . B 2 -20.102 12.921 25.592 1 22.55 ? N RYD 1501 A 1 HETATM 12 C C RYD . . . B 2 -18.767 13.396 25.539 1 31.79 ? C RYD 1501 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #