data_5S8E # _model_server_result.job_id 1v4KquR9yIp-vejfu57oYA _model_server_result.datetime_utc '2024-12-01 15:08:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S8E # _exptl.entry_id 5S8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-dihydro-1,4-benzodioxine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.34 _cell.angle_gamma 90 _cell.entry_id 5S8E _cell.length_a 83.36 _cell.length_b 27.41 _cell.length_c 56.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H9 N O3' _chem_comp.formula_weight 179.173 _chem_comp.id 5WY _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-dihydro-1,4-benzodioxine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAE 5WY doub 1 n y CAC CAD 5WY sing 2 n y CAE CAL 5WY sing 3 n y OAB CAJ 5WY doub 4 n n CAD CAK 5WY doub 5 n y CAL CAJ 5WY sing 6 n n CAL CAM 5WY doub 7 n y CAJ NAA 5WY sing 8 n n CAK CAM 5WY sing 9 n y CAK OAH 5WY sing 10 n n CAM OAI 5WY sing 11 n n OAH CAF 5WY sing 12 n n OAI CAG 5WY sing 13 n n CAF CAG 5WY sing 14 n n CAE H1 5WY sing 15 n n CAC H2 5WY sing 16 n n CAD H3 5WY sing 17 n n CAF H4 5WY sing 18 n n CAF H5 5WY sing 19 n n CAG H6 5WY sing 20 n n CAG H7 5WY sing 21 n n NAA H8 5WY sing 22 n n NAA H9 5WY sing 23 n n # _atom_sites.entry_id 5S8E _atom_sites.fract_transf_matrix[1][1] 0.011996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002189 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5WY A 1 1501 1 5WY LIG . C 3 HOH A 1 1601 64 HOH HOH . C 3 HOH A 2 1602 105 HOH HOH . C 3 HOH A 3 1603 114 HOH HOH . C 3 HOH A 4 1604 90 HOH HOH . C 3 HOH A 5 1605 43 HOH HOH . C 3 HOH A 6 1606 108 HOH HOH . C 3 HOH A 7 1607 96 HOH HOH . C 3 HOH A 8 1608 7 HOH HOH . C 3 HOH A 9 1609 128 HOH HOH . C 3 HOH A 10 1610 11 HOH HOH . C 3 HOH A 11 1611 38 HOH HOH . C 3 HOH A 12 1612 69 HOH HOH . C 3 HOH A 13 1613 130 HOH HOH . C 3 HOH A 14 1614 127 HOH HOH . C 3 HOH A 15 1615 40 HOH HOH . C 3 HOH A 16 1616 30 HOH HOH . C 3 HOH A 17 1617 21 HOH HOH . C 3 HOH A 18 1618 117 HOH HOH . C 3 HOH A 19 1619 72 HOH HOH . C 3 HOH A 20 1620 97 HOH HOH . C 3 HOH A 21 1621 5 HOH HOH . C 3 HOH A 22 1622 101 HOH HOH . C 3 HOH A 23 1623 12 HOH HOH . C 3 HOH A 24 1624 32 HOH HOH . C 3 HOH A 25 1625 73 HOH HOH . C 3 HOH A 26 1626 2 HOH HOH . C 3 HOH A 27 1627 111 HOH HOH . C 3 HOH A 28 1628 23 HOH HOH . C 3 HOH A 29 1629 29 HOH HOH . C 3 HOH A 30 1630 103 HOH HOH . C 3 HOH A 31 1631 25 HOH HOH . C 3 HOH A 32 1632 17 HOH HOH . C 3 HOH A 33 1633 8 HOH HOH . C 3 HOH A 34 1634 92 HOH HOH . C 3 HOH A 35 1635 76 HOH HOH . C 3 HOH A 36 1636 98 HOH HOH . C 3 HOH A 37 1637 124 HOH HOH . C 3 HOH A 38 1638 47 HOH HOH . C 3 HOH A 39 1639 74 HOH HOH . C 3 HOH A 40 1640 79 HOH HOH . C 3 HOH A 41 1641 54 HOH HOH . C 3 HOH A 42 1642 51 HOH HOH . C 3 HOH A 43 1643 60 HOH HOH . C 3 HOH A 44 1644 104 HOH HOH . C 3 HOH A 45 1645 62 HOH HOH . C 3 HOH A 46 1646 4 HOH HOH . C 3 HOH A 47 1647 36 HOH HOH . C 3 HOH A 48 1648 59 HOH HOH . C 3 HOH A 49 1649 20 HOH HOH . C 3 HOH A 50 1650 65 HOH HOH . C 3 HOH A 51 1651 119 HOH HOH . C 3 HOH A 52 1652 113 HOH HOH . C 3 HOH A 53 1653 66 HOH HOH . C 3 HOH A 54 1654 39 HOH HOH . C 3 HOH A 55 1655 22 HOH HOH . C 3 HOH A 56 1656 55 HOH HOH . C 3 HOH A 57 1657 3 HOH HOH . C 3 HOH A 58 1658 45 HOH HOH . C 3 HOH A 59 1659 18 HOH HOH . C 3 HOH A 60 1660 93 HOH HOH . C 3 HOH A 61 1661 109 HOH HOH . C 3 HOH A 62 1662 133 HOH HOH . C 3 HOH A 63 1663 6 HOH HOH . C 3 HOH A 64 1664 16 HOH HOH . C 3 HOH A 65 1665 94 HOH HOH . C 3 HOH A 66 1666 35 HOH HOH . C 3 HOH A 67 1667 49 HOH HOH . C 3 HOH A 68 1668 68 HOH HOH . C 3 HOH A 69 1669 34 HOH HOH . C 3 HOH A 70 1670 44 HOH HOH . C 3 HOH A 71 1671 46 HOH HOH . C 3 HOH A 72 1672 27 HOH HOH . C 3 HOH A 73 1673 63 HOH HOH . C 3 HOH A 74 1674 91 HOH HOH . C 3 HOH A 75 1675 99 HOH HOH . C 3 HOH A 76 1676 126 HOH HOH . C 3 HOH A 77 1677 102 HOH HOH . C 3 HOH A 78 1678 1 HOH HOH . C 3 HOH A 79 1679 9 HOH HOH . C 3 HOH A 80 1680 86 HOH HOH . C 3 HOH A 81 1681 53 HOH HOH . C 3 HOH A 82 1682 118 HOH HOH . C 3 HOH A 83 1683 10 HOH HOH . C 3 HOH A 84 1684 110 HOH HOH . C 3 HOH A 85 1685 116 HOH HOH . C 3 HOH A 86 1686 67 HOH HOH . C 3 HOH A 87 1687 70 HOH HOH . C 3 HOH A 88 1688 14 HOH HOH . C 3 HOH A 89 1689 112 HOH HOH . C 3 HOH A 90 1690 132 HOH HOH . C 3 HOH A 91 1691 15 HOH HOH . C 3 HOH A 92 1692 33 HOH HOH . C 3 HOH A 93 1693 37 HOH HOH . C 3 HOH A 94 1694 75 HOH HOH . C 3 HOH A 95 1695 129 HOH HOH . C 3 HOH A 96 1696 57 HOH HOH . C 3 HOH A 97 1697 48 HOH HOH . C 3 HOH A 98 1698 71 HOH HOH . C 3 HOH A 99 1699 87 HOH HOH . C 3 HOH A 100 1700 82 HOH HOH . C 3 HOH A 101 1701 95 HOH HOH . C 3 HOH A 102 1702 41 HOH HOH . C 3 HOH A 103 1703 19 HOH HOH . C 3 HOH A 104 1704 80 HOH HOH . C 3 HOH A 105 1705 24 HOH HOH . C 3 HOH A 106 1706 50 HOH HOH . C 3 HOH A 107 1707 122 HOH HOH . C 3 HOH A 108 1708 31 HOH HOH . C 3 HOH A 109 1709 28 HOH HOH . C 3 HOH A 110 1710 42 HOH HOH . C 3 HOH A 111 1711 123 HOH HOH . C 3 HOH A 112 1712 26 HOH HOH . C 3 HOH A 113 1713 115 HOH HOH . C 3 HOH A 114 1714 84 HOH HOH . C 3 HOH A 115 1715 88 HOH HOH . C 3 HOH A 116 1716 52 HOH HOH . C 3 HOH A 117 1717 107 HOH HOH . C 3 HOH A 118 1718 83 HOH HOH . C 3 HOH A 119 1719 77 HOH HOH . C 3 HOH A 120 1720 106 HOH HOH . C 3 HOH A 121 1721 78 HOH HOH . C 3 HOH A 122 1722 81 HOH HOH . C 3 HOH A 123 1723 61 HOH HOH . C 3 HOH A 124 1724 85 HOH HOH . C 3 HOH A 125 1725 89 HOH HOH . C 3 HOH A 126 1726 120 HOH HOH . C 3 HOH A 127 1727 13 HOH HOH . C 3 HOH A 128 1728 100 HOH HOH . C 3 HOH A 129 1729 58 HOH HOH . C 3 HOH A 130 1730 56 HOH HOH . C 3 HOH A 131 1731 121 HOH HOH . C 3 HOH A 132 1732 131 HOH HOH . C 3 HOH A 133 1733 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAE 5WY . D . B 2 -23.827 12.312 26.292 1 15.87 ? CAE 5WY 1501 A 1 HETATM 2 C CAC 5WY . D . B 2 -23.175 11.918 25.099 1 17.21 ? CAC 5WY 1501 A 1 HETATM 3 C CAD 5WY . D . B 2 -21.801 12.133 24.967 1 15.67 ? CAD 5WY 1501 A 1 HETATM 4 C CAK 5WY . D . B 2 -21.096 12.81 25.957 1 14.14 ? CAK 5WY 1501 A 1 HETATM 5 O OAH 5WY . D . B 2 -19.74 13.053 25.749 1 15.54 ? OAH 5WY 1501 A 1 HETATM 6 C CAF 5WY . D . B 2 -19.245 14.133 26.565 1 18.42 ? CAF 5WY 1501 A 1 HETATM 7 C CAG 5WY . D . B 2 -19.613 13.904 27.98 1 18.46 ? CAG 5WY 1501 A 1 HETATM 8 O OAI 5WY . D . B 2 -21.042 13.883 28.144 1 16.67 ? OAI 5WY 1501 A 1 HETATM 9 C CAM 5WY . D . B 2 -21.738 13.237 27.114 1 15.38 ? CAM 5WY 1501 A 1 HETATM 10 C CAL 5WY . D . B 2 -23.109 12.963 27.321 1 15.9 ? CAL 5WY 1501 A 1 HETATM 11 C CAJ 5WY . D . B 2 -23.923 13.478 28.493 1 18.25 ? CAJ 5WY 1501 A 1 HETATM 12 O OAB 5WY . D . B 2 -23.402 14.04 29.47 1 22.63 ? OAB 5WY 1501 A 1 HETATM 13 N NAA 5WY . D . B 2 -25.233 13.34 28.474 1 15.48 ? NAA 5WY 1501 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #