data_5S8F # _model_server_result.job_id 4zijf-i3dQ_mvG-5Tk1GPQ _model_server_result.datetime_utc '2024-11-22 19:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S8F # _exptl.entry_id 5S8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 203.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(5-oxidanylidene-7,8-dihydro-6~{H}-naphthalen-2-yl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.19 _cell.angle_gamma 90 _cell.entry_id 5S8F _cell.length_a 82.94 _cell.length_b 27.52 _cell.length_c 56.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H13 N O2' _chem_comp.formula_weight 203.237 _chem_comp.id ZHA _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(5-oxidanylidene-7,8-dihydro-6~{H}-naphthalen-2-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C08 ZHA doub 376 n n C08 C09 ZHA sing 377 n n C08 N07 ZHA sing 378 n n C06 C01 ZHA doub 379 n y C06 C05 ZHA sing 380 n y C01 C02 ZHA sing 381 n y O15 C14 ZHA doub 382 n n N07 C05 ZHA sing 383 n n C05 C04 ZHA doub 384 n y C02 C14 ZHA sing 385 n n C02 C03 ZHA doub 386 n y C14 C13 ZHA sing 387 n n C04 C03 ZHA sing 388 n y C03 C11 ZHA sing 389 n n C13 C12 ZHA sing 390 n n C11 C12 ZHA sing 391 n n C13 H1 ZHA sing 392 n n C13 H2 ZHA sing 393 n n C01 H3 ZHA sing 394 n n C04 H4 ZHA sing 395 n n C06 H5 ZHA sing 396 n n N07 H6 ZHA sing 397 n n C09 H7 ZHA sing 398 n n C09 H8 ZHA sing 399 n n C09 H9 ZHA sing 400 n n C11 H10 ZHA sing 401 n n C11 H11 ZHA sing 402 n n C12 H12 ZHA sing 403 n n C12 H13 ZHA sing 404 n n # _atom_sites.entry_id 5S8F _atom_sites.fract_transf_matrix[1][1] 0.012057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002167 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZHA A 1 1501 1 ZHA LIG . C 3 HOH A 1 1601 118 HOH HOH . C 3 HOH A 2 1602 104 HOH HOH . C 3 HOH A 3 1603 96 HOH HOH . C 3 HOH A 4 1604 88 HOH HOH . C 3 HOH A 5 1605 78 HOH HOH . C 3 HOH A 6 1606 42 HOH HOH . C 3 HOH A 7 1607 70 HOH HOH . C 3 HOH A 8 1608 108 HOH HOH . C 3 HOH A 9 1609 54 HOH HOH . C 3 HOH A 10 1610 29 HOH HOH . C 3 HOH A 11 1611 1 HOH HOH . C 3 HOH A 12 1612 122 HOH HOH . C 3 HOH A 13 1613 66 HOH HOH . C 3 HOH A 14 1614 107 HOH HOH . C 3 HOH A 15 1615 41 HOH HOH . C 3 HOH A 16 1616 95 HOH HOH . C 3 HOH A 17 1617 37 HOH HOH . C 3 HOH A 18 1618 32 HOH HOH . C 3 HOH A 19 1619 87 HOH HOH . C 3 HOH A 20 1620 34 HOH HOH . C 3 HOH A 21 1621 69 HOH HOH . C 3 HOH A 22 1622 10 HOH HOH . C 3 HOH A 23 1623 47 HOH HOH . C 3 HOH A 24 1624 63 HOH HOH . C 3 HOH A 25 1625 40 HOH HOH . C 3 HOH A 26 1626 21 HOH HOH . C 3 HOH A 27 1627 99 HOH HOH . C 3 HOH A 28 1628 16 HOH HOH . C 3 HOH A 29 1629 19 HOH HOH . C 3 HOH A 30 1630 101 HOH HOH . C 3 HOH A 31 1631 62 HOH HOH . C 3 HOH A 32 1632 3 HOH HOH . C 3 HOH A 33 1633 76 HOH HOH . C 3 HOH A 34 1634 7 HOH HOH . C 3 HOH A 35 1635 27 HOH HOH . C 3 HOH A 36 1636 6 HOH HOH . C 3 HOH A 37 1637 38 HOH HOH . C 3 HOH A 38 1638 17 HOH HOH . C 3 HOH A 39 1639 85 HOH HOH . C 3 HOH A 40 1640 65 HOH HOH . C 3 HOH A 41 1641 11 HOH HOH . C 3 HOH A 42 1642 50 HOH HOH . C 3 HOH A 43 1643 31 HOH HOH . C 3 HOH A 44 1644 52 HOH HOH . C 3 HOH A 45 1645 92 HOH HOH . C 3 HOH A 46 1646 72 HOH HOH . C 3 HOH A 47 1647 4 HOH HOH . C 3 HOH A 48 1648 102 HOH HOH . C 3 HOH A 49 1649 67 HOH HOH . C 3 HOH A 50 1650 74 HOH HOH . C 3 HOH A 51 1651 48 HOH HOH . C 3 HOH A 52 1652 61 HOH HOH . C 3 HOH A 53 1653 89 HOH HOH . C 3 HOH A 54 1654 60 HOH HOH . C 3 HOH A 55 1655 44 HOH HOH . C 3 HOH A 56 1656 12 HOH HOH . C 3 HOH A 57 1657 30 HOH HOH . C 3 HOH A 58 1658 5 HOH HOH . C 3 HOH A 59 1659 8 HOH HOH . C 3 HOH A 60 1660 35 HOH HOH . C 3 HOH A 61 1661 124 HOH HOH . C 3 HOH A 62 1662 20 HOH HOH . C 3 HOH A 63 1663 24 HOH HOH . C 3 HOH A 64 1664 25 HOH HOH . C 3 HOH A 65 1665 14 HOH HOH . C 3 HOH A 66 1666 126 HOH HOH . C 3 HOH A 67 1667 36 HOH HOH . C 3 HOH A 68 1668 80 HOH HOH . C 3 HOH A 69 1669 53 HOH HOH . C 3 HOH A 70 1670 82 HOH HOH . C 3 HOH A 71 1671 43 HOH HOH . C 3 HOH A 72 1672 49 HOH HOH . C 3 HOH A 73 1673 119 HOH HOH . C 3 HOH A 74 1674 91 HOH HOH . C 3 HOH A 75 1675 18 HOH HOH . C 3 HOH A 76 1676 98 HOH HOH . C 3 HOH A 77 1677 94 HOH HOH . C 3 HOH A 78 1678 81 HOH HOH . C 3 HOH A 79 1679 116 HOH HOH . C 3 HOH A 80 1680 23 HOH HOH . C 3 HOH A 81 1681 79 HOH HOH . C 3 HOH A 82 1682 13 HOH HOH . C 3 HOH A 83 1683 59 HOH HOH . C 3 HOH A 84 1684 100 HOH HOH . C 3 HOH A 85 1685 15 HOH HOH . C 3 HOH A 86 1686 39 HOH HOH . C 3 HOH A 87 1687 28 HOH HOH . C 3 HOH A 88 1688 46 HOH HOH . C 3 HOH A 89 1689 22 HOH HOH . C 3 HOH A 90 1690 106 HOH HOH . C 3 HOH A 91 1691 9 HOH HOH . C 3 HOH A 92 1692 56 HOH HOH . C 3 HOH A 93 1693 86 HOH HOH . C 3 HOH A 94 1694 2 HOH HOH . C 3 HOH A 95 1695 26 HOH HOH . C 3 HOH A 96 1696 55 HOH HOH . C 3 HOH A 97 1697 125 HOH HOH . C 3 HOH A 98 1698 57 HOH HOH . C 3 HOH A 99 1699 121 HOH HOH . C 3 HOH A 100 1700 83 HOH HOH . C 3 HOH A 101 1701 120 HOH HOH . C 3 HOH A 102 1702 115 HOH HOH . C 3 HOH A 103 1703 97 HOH HOH . C 3 HOH A 104 1704 109 HOH HOH . C 3 HOH A 105 1705 117 HOH HOH . C 3 HOH A 106 1706 51 HOH HOH . C 3 HOH A 107 1707 64 HOH HOH . C 3 HOH A 108 1708 113 HOH HOH . C 3 HOH A 109 1709 103 HOH HOH . C 3 HOH A 110 1710 33 HOH HOH . C 3 HOH A 111 1711 77 HOH HOH . C 3 HOH A 112 1712 93 HOH HOH . C 3 HOH A 113 1713 90 HOH HOH . C 3 HOH A 114 1714 75 HOH HOH . C 3 HOH A 115 1715 68 HOH HOH . C 3 HOH A 116 1716 45 HOH HOH . C 3 HOH A 117 1717 84 HOH HOH . C 3 HOH A 118 1718 71 HOH HOH . C 3 HOH A 119 1719 110 HOH HOH . C 3 HOH A 120 1720 112 HOH HOH . C 3 HOH A 121 1721 73 HOH HOH . C 3 HOH A 122 1722 111 HOH HOH . C 3 HOH A 123 1723 114 HOH HOH . C 3 HOH A 124 1724 105 HOH HOH . C 3 HOH A 125 1725 123 HOH HOH . C 3 HOH A 126 1726 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 ZHA . D . B 2 -19.329 13.181 25.647 1 18.5 ? C13 ZHA 1501 A 1 HETATM 2 C C01 ZHA . D . B 2 -22.996 12.231 26.31 1 17.69 ? C01 ZHA 1501 A 1 HETATM 3 C C02 ZHA . D . B 2 -21.715 12.753 26.484 1 15.6 ? C02 ZHA 1501 A 1 HETATM 4 C C03 ZHA . D . B 2 -21.445 13.442 27.663 1 14.48 ? C03 ZHA 1501 A 1 HETATM 5 C C04 ZHA . D . B 2 -22.432 13.599 28.64 1 19.42 ? C04 ZHA 1501 A 1 HETATM 6 C C05 ZHA . D . B 2 -23.742 13.136 28.45 1 18.4 ? C05 ZHA 1501 A 1 HETATM 7 C C06 ZHA . D . B 2 -23.973 12.406 27.266 1 17.48 ? C06 ZHA 1501 A 1 HETATM 8 N N07 ZHA . D . B 2 -24.61 13.4 29.558 1 28.06 ? N07 ZHA 1501 A 1 HETATM 9 C C08 ZHA . D . B 2 -25.956 13.371 29.787 1 23.94 ? C08 ZHA 1501 A 1 HETATM 10 C C09 ZHA . D . B 2 -26.762 12.717 28.766 1 20.86 ? C09 ZHA 1501 A 1 HETATM 11 O O10 ZHA . D . B 2 -26.523 13.842 30.822 1 33.71 ? O10 ZHA 1501 A 1 HETATM 12 C C11 ZHA . D . B 2 -20.06 13.969 27.931 1 16.49 ? C11 ZHA 1501 A 1 HETATM 13 C C12 ZHA . D . B 2 -18.967 13.338 27.104 1 20.06 ? C12 ZHA 1501 A 1 HETATM 14 C C14 ZHA . D . B 2 -20.679 12.604 25.415 1 17.27 ? C14 ZHA 1501 A 1 HETATM 15 O O15 ZHA . D . B 2 -20.962 12.104 24.314 1 20.63 ? O15 ZHA 1501 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #