data_5S8K # _model_server_result.job_id T3dSv8BMHsV96x6ZjZvcsg _model_server_result.datetime_utc '2024-11-25 18:31:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S8K # _exptl.entry_id 5S8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,4-dimethyl-1,2-oxazol-5-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.83 _cell.angle_gamma 90 _cell.entry_id 5S8K _cell.length_a 82.6 _cell.length_b 27.43 _cell.length_c 56.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H8 N2 O' _chem_comp.formula_weight 112.13 _chem_comp.id XLV _chem_comp.mon_nstd_flag . _chem_comp.name 3,4-dimethyl-1,2-oxazol-5-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XLV sing 376 n n C2 C3 XLV sing 377 n y C3 C4 XLV sing 378 n n C3 N1 XLV doub 379 n y N1 O1 XLV sing 380 n y O1 C5 XLV sing 381 n y C5 N2 XLV sing 382 n n C2 C5 XLV doub 383 n y C4 H6 XLV sing 384 n n C4 H4 XLV sing 385 n n C4 H5 XLV sing 386 n n C1 H2 XLV sing 387 n n C1 H1 XLV sing 388 n n C1 H3 XLV sing 389 n n N2 H7 XLV sing 390 n n N2 H8 XLV sing 391 n n # _atom_sites.entry_id 5S8K _atom_sites.fract_transf_matrix[1][1] 0.012107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002098 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XLV A 1 1501 1 XLV LIG . C 3 HOH A 1 1601 103 HOH HOH . C 3 HOH A 2 1602 100 HOH HOH . C 3 HOH A 3 1603 88 HOH HOH . C 3 HOH A 4 1604 77 HOH HOH . C 3 HOH A 5 1605 4 HOH HOH . C 3 HOH A 6 1606 59 HOH HOH . C 3 HOH A 7 1607 89 HOH HOH . C 3 HOH A 8 1608 119 HOH HOH . C 3 HOH A 9 1609 33 HOH HOH . C 3 HOH A 10 1610 80 HOH HOH . C 3 HOH A 11 1611 67 HOH HOH . C 3 HOH A 12 1612 25 HOH HOH . C 3 HOH A 13 1613 47 HOH HOH . C 3 HOH A 14 1614 62 HOH HOH . C 3 HOH A 15 1615 36 HOH HOH . C 3 HOH A 16 1616 28 HOH HOH . C 3 HOH A 17 1617 91 HOH HOH . C 3 HOH A 18 1618 86 HOH HOH . C 3 HOH A 19 1619 56 HOH HOH . C 3 HOH A 20 1620 55 HOH HOH . C 3 HOH A 21 1621 1 HOH HOH . C 3 HOH A 22 1622 105 HOH HOH . C 3 HOH A 23 1623 30 HOH HOH . C 3 HOH A 24 1624 19 HOH HOH . C 3 HOH A 25 1625 18 HOH HOH . C 3 HOH A 26 1626 29 HOH HOH . C 3 HOH A 27 1627 126 HOH HOH . C 3 HOH A 28 1628 71 HOH HOH . C 3 HOH A 29 1629 26 HOH HOH . C 3 HOH A 30 1630 118 HOH HOH . C 3 HOH A 31 1631 3 HOH HOH . C 3 HOH A 32 1632 14 HOH HOH . C 3 HOH A 33 1633 39 HOH HOH . C 3 HOH A 34 1634 8 HOH HOH . C 3 HOH A 35 1635 2 HOH HOH . C 3 HOH A 36 1636 20 HOH HOH . C 3 HOH A 37 1637 49 HOH HOH . C 3 HOH A 38 1638 11 HOH HOH . C 3 HOH A 39 1639 74 HOH HOH . C 3 HOH A 40 1640 64 HOH HOH . C 3 HOH A 41 1641 21 HOH HOH . C 3 HOH A 42 1642 10 HOH HOH . C 3 HOH A 43 1643 65 HOH HOH . C 3 HOH A 44 1644 54 HOH HOH . C 3 HOH A 45 1645 45 HOH HOH . C 3 HOH A 46 1646 106 HOH HOH . C 3 HOH A 47 1647 15 HOH HOH . C 3 HOH A 48 1648 121 HOH HOH . C 3 HOH A 49 1649 23 HOH HOH . C 3 HOH A 50 1650 34 HOH HOH . C 3 HOH A 51 1651 41 HOH HOH . C 3 HOH A 52 1652 61 HOH HOH . C 3 HOH A 53 1653 32 HOH HOH . C 3 HOH A 54 1654 63 HOH HOH . C 3 HOH A 55 1655 99 HOH HOH . C 3 HOH A 56 1656 12 HOH HOH . C 3 HOH A 57 1657 51 HOH HOH . C 3 HOH A 58 1658 72 HOH HOH . C 3 HOH A 59 1659 58 HOH HOH . C 3 HOH A 60 1660 79 HOH HOH . C 3 HOH A 61 1661 48 HOH HOH . C 3 HOH A 62 1662 43 HOH HOH . C 3 HOH A 63 1663 37 HOH HOH . C 3 HOH A 64 1664 40 HOH HOH . C 3 HOH A 65 1665 7 HOH HOH . C 3 HOH A 66 1666 83 HOH HOH . C 3 HOH A 67 1667 13 HOH HOH . C 3 HOH A 68 1668 50 HOH HOH . C 3 HOH A 69 1669 104 HOH HOH . C 3 HOH A 70 1670 9 HOH HOH . C 3 HOH A 71 1671 84 HOH HOH . C 3 HOH A 72 1672 60 HOH HOH . C 3 HOH A 73 1673 124 HOH HOH . C 3 HOH A 74 1674 66 HOH HOH . C 3 HOH A 75 1675 93 HOH HOH . C 3 HOH A 76 1676 17 HOH HOH . C 3 HOH A 77 1677 52 HOH HOH . C 3 HOH A 78 1678 5 HOH HOH . C 3 HOH A 79 1679 101 HOH HOH . C 3 HOH A 80 1680 46 HOH HOH . C 3 HOH A 81 1681 38 HOH HOH . C 3 HOH A 82 1682 123 HOH HOH . C 3 HOH A 83 1683 78 HOH HOH . C 3 HOH A 84 1684 102 HOH HOH . C 3 HOH A 85 1685 116 HOH HOH . C 3 HOH A 86 1686 117 HOH HOH . C 3 HOH A 87 1687 114 HOH HOH . C 3 HOH A 88 1688 81 HOH HOH . C 3 HOH A 89 1689 6 HOH HOH . C 3 HOH A 90 1690 16 HOH HOH . C 3 HOH A 91 1691 92 HOH HOH . C 3 HOH A 92 1692 35 HOH HOH . C 3 HOH A 93 1693 70 HOH HOH . C 3 HOH A 94 1694 98 HOH HOH . C 3 HOH A 95 1695 27 HOH HOH . C 3 HOH A 96 1696 31 HOH HOH . C 3 HOH A 97 1697 57 HOH HOH . C 3 HOH A 98 1698 42 HOH HOH . C 3 HOH A 99 1699 22 HOH HOH . C 3 HOH A 100 1700 96 HOH HOH . C 3 HOH A 101 1701 120 HOH HOH . C 3 HOH A 102 1702 122 HOH HOH . C 3 HOH A 103 1703 76 HOH HOH . C 3 HOH A 104 1704 125 HOH HOH . C 3 HOH A 105 1705 107 HOH HOH . C 3 HOH A 106 1706 115 HOH HOH . C 3 HOH A 107 1707 53 HOH HOH . C 3 HOH A 108 1708 97 HOH HOH . C 3 HOH A 109 1709 128 HOH HOH . C 3 HOH A 110 1710 24 HOH HOH . C 3 HOH A 111 1711 82 HOH HOH . C 3 HOH A 112 1712 112 HOH HOH . C 3 HOH A 113 1713 109 HOH HOH . C 3 HOH A 114 1714 110 HOH HOH . C 3 HOH A 115 1715 90 HOH HOH . C 3 HOH A 116 1716 75 HOH HOH . C 3 HOH A 117 1717 85 HOH HOH . C 3 HOH A 118 1718 68 HOH HOH . C 3 HOH A 119 1719 44 HOH HOH . C 3 HOH A 120 1720 73 HOH HOH . C 3 HOH A 121 1721 108 HOH HOH . C 3 HOH A 122 1722 127 HOH HOH . C 3 HOH A 123 1723 113 HOH HOH . C 3 HOH A 124 1724 111 HOH HOH . C 3 HOH A 125 1725 129 HOH HOH . C 3 HOH A 126 1726 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XLV . . . B 2 -19.432 12.154 25.823 1 22.82 ? N1 XLV 1501 A 1 HETATM 2 C C4 XLV . . . B 2 -18.985 13.383 27.792 1 25.7 ? C4 XLV 1501 A 1 HETATM 3 C C5 XLV . . . B 2 -21.617 11.78 25.731 1 20.05 ? C5 XLV 1501 A 1 HETATM 4 C C1 XLV . . . B 2 -22.193 12.707 28.169 1 25.34 ? C1 XLV 1501 A 1 HETATM 5 C C2 XLV . . . B 2 -21.386 12.406 26.961 1 21.14 ? C2 XLV 1501 A 1 HETATM 6 C C3 XLV . . . B 2 -19.922 12.704 26.873 1 22.33 ? C3 XLV 1501 A 1 HETATM 7 O O1 XLV . . . B 2 -20.504 11.615 25.054 1 24.3 ? O1 XLV 1501 A 1 HETATM 8 N N2 XLV . . . B 2 -22.673 11.267 25.092 1 21.89 ? N2 XLV 1501 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #