data_5S8M # _model_server_result.job_id hGlsE8KK-gMQVKVb9RdqLQ _model_server_result.datetime_utc '2024-11-15 10:45:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S8M # _exptl.entry_id 5S8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.2 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-BENZYL-1H-IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.42 _cell.angle_gamma 90 _cell.entry_id 5S8M _cell.length_a 82.91 _cell.length_b 27.35 _cell.length_c 56.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H10 N2' _chem_comp.formula_weight 158.2 _chem_comp.id 1BN _chem_comp.mon_nstd_flag . _chem_comp.name 1-BENZYL-1H-IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-BENZYLIMIDAZOLE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 1BN doub 1 n y C1 N1 1BN sing 2 n y C1 H1 1BN sing 3 n n C2 N2 1BN sing 4 n y C2 H2 1BN sing 5 n n N1 C3 1BN sing 6 n y N1 C4 1BN sing 7 n n C3 N2 1BN doub 8 n y C3 H3 1BN sing 9 n n C4 C5 1BN sing 10 n n C4 H41 1BN sing 11 n n C4 H42 1BN sing 12 n n C5 C6 1BN doub 13 n y C5 C7 1BN sing 14 n y C6 C8 1BN sing 15 n y C6 H6 1BN sing 16 n n C7 C9 1BN doub 17 n y C7 H7 1BN sing 18 n n C8 C10 1BN doub 19 n y C8 H8 1BN sing 20 n n C9 C10 1BN sing 21 n y C9 H9 1BN sing 22 n n C10 H10 1BN sing 23 n n # _atom_sites.entry_id 5S8M _atom_sites.fract_transf_matrix[1][1] 0.012061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1BN A 1 1501 1 1BN LIG . C 3 HOH A 1 1601 3 HOH HOH . C 3 HOH A 2 1602 49 HOH HOH . C 3 HOH A 3 1603 73 HOH HOH . C 3 HOH A 4 1604 82 HOH HOH . C 3 HOH A 5 1605 46 HOH HOH . C 3 HOH A 6 1606 57 HOH HOH . C 3 HOH A 7 1607 74 HOH HOH . C 3 HOH A 8 1608 39 HOH HOH . C 3 HOH A 9 1609 9 HOH HOH . C 3 HOH A 10 1610 38 HOH HOH . C 3 HOH A 11 1611 56 HOH HOH . C 3 HOH A 12 1612 70 HOH HOH . C 3 HOH A 13 1613 16 HOH HOH . C 3 HOH A 14 1614 98 HOH HOH . C 3 HOH A 15 1615 22 HOH HOH . C 3 HOH A 16 1616 99 HOH HOH . C 3 HOH A 17 1617 79 HOH HOH . C 3 HOH A 18 1618 20 HOH HOH . C 3 HOH A 19 1619 75 HOH HOH . C 3 HOH A 20 1620 2 HOH HOH . C 3 HOH A 21 1621 23 HOH HOH . C 3 HOH A 22 1622 6 HOH HOH . C 3 HOH A 23 1623 72 HOH HOH . C 3 HOH A 24 1624 48 HOH HOH . C 3 HOH A 25 1625 34 HOH HOH . C 3 HOH A 26 1626 68 HOH HOH . C 3 HOH A 27 1627 101 HOH HOH . C 3 HOH A 28 1628 69 HOH HOH . C 3 HOH A 29 1629 60 HOH HOH . C 3 HOH A 30 1630 28 HOH HOH . C 3 HOH A 31 1631 27 HOH HOH . C 3 HOH A 32 1632 1 HOH HOH . C 3 HOH A 33 1633 21 HOH HOH . C 3 HOH A 34 1634 65 HOH HOH . C 3 HOH A 35 1635 30 HOH HOH . C 3 HOH A 36 1636 45 HOH HOH . C 3 HOH A 37 1637 4 HOH HOH . C 3 HOH A 38 1638 24 HOH HOH . C 3 HOH A 39 1639 53 HOH HOH . C 3 HOH A 40 1640 26 HOH HOH . C 3 HOH A 41 1641 19 HOH HOH . C 3 HOH A 42 1642 36 HOH HOH . C 3 HOH A 43 1643 71 HOH HOH . C 3 HOH A 44 1644 47 HOH HOH . C 3 HOH A 45 1645 102 HOH HOH . C 3 HOH A 46 1646 80 HOH HOH . C 3 HOH A 47 1647 25 HOH HOH . C 3 HOH A 48 1648 93 HOH HOH . C 3 HOH A 49 1649 87 HOH HOH . C 3 HOH A 50 1650 76 HOH HOH . C 3 HOH A 51 1651 103 HOH HOH . C 3 HOH A 52 1652 5 HOH HOH . C 3 HOH A 53 1653 8 HOH HOH . C 3 HOH A 54 1654 59 HOH HOH . C 3 HOH A 55 1655 14 HOH HOH . C 3 HOH A 56 1656 84 HOH HOH . C 3 HOH A 57 1657 78 HOH HOH . C 3 HOH A 58 1658 12 HOH HOH . C 3 HOH A 59 1659 43 HOH HOH . C 3 HOH A 60 1660 18 HOH HOH . C 3 HOH A 61 1661 42 HOH HOH . C 3 HOH A 62 1662 35 HOH HOH . C 3 HOH A 63 1663 50 HOH HOH . C 3 HOH A 64 1664 33 HOH HOH . C 3 HOH A 65 1665 61 HOH HOH . C 3 HOH A 66 1666 44 HOH HOH . C 3 HOH A 67 1667 11 HOH HOH . C 3 HOH A 68 1668 51 HOH HOH . C 3 HOH A 69 1669 10 HOH HOH . C 3 HOH A 70 1670 58 HOH HOH . C 3 HOH A 71 1671 64 HOH HOH . C 3 HOH A 72 1672 52 HOH HOH . C 3 HOH A 73 1673 97 HOH HOH . C 3 HOH A 74 1674 94 HOH HOH . C 3 HOH A 75 1675 31 HOH HOH . C 3 HOH A 76 1676 67 HOH HOH . C 3 HOH A 77 1677 7 HOH HOH . C 3 HOH A 78 1678 88 HOH HOH . C 3 HOH A 79 1679 15 HOH HOH . C 3 HOH A 80 1680 55 HOH HOH . C 3 HOH A 81 1681 13 HOH HOH . C 3 HOH A 82 1682 105 HOH HOH . C 3 HOH A 83 1683 17 HOH HOH . C 3 HOH A 84 1684 54 HOH HOH . C 3 HOH A 85 1685 86 HOH HOH . C 3 HOH A 86 1686 104 HOH HOH . C 3 HOH A 87 1687 66 HOH HOH . C 3 HOH A 88 1688 83 HOH HOH . C 3 HOH A 89 1689 90 HOH HOH . C 3 HOH A 90 1690 95 HOH HOH . C 3 HOH A 91 1691 92 HOH HOH . C 3 HOH A 92 1692 29 HOH HOH . C 3 HOH A 93 1693 63 HOH HOH . C 3 HOH A 94 1694 41 HOH HOH . C 3 HOH A 95 1695 62 HOH HOH . C 3 HOH A 96 1696 96 HOH HOH . C 3 HOH A 97 1697 81 HOH HOH . C 3 HOH A 98 1698 106 HOH HOH . C 3 HOH A 99 1699 40 HOH HOH . C 3 HOH A 100 1700 100 HOH HOH . C 3 HOH A 101 1701 85 HOH HOH . C 3 HOH A 102 1702 32 HOH HOH . C 3 HOH A 103 1703 89 HOH HOH . C 3 HOH A 104 1704 91 HOH HOH . C 3 HOH A 105 1705 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1BN . . . B 2 -18.78 15.211 27.216 1 26.92 ? C1 1BN 1501 A 1 HETATM 2 C C2 1BN . . . B 2 -18.375 16.025 26.222 1 21.97 ? C2 1BN 1501 A 1 HETATM 3 N N1 1BN . . . B 2 -18.797 13.932 26.724 1 21.19 ? N1 1BN 1501 A 1 HETATM 4 C C3 1BN . . . B 2 -18.539 14.044 25.396 1 22.15 ? C3 1BN 1501 A 1 HETATM 5 N N2 1BN . . . B 2 -18.29 15.283 25.075 1 24.81 ? N2 1BN 1501 A 1 HETATM 6 C C4 1BN . . . B 2 -19.329 12.741 27.383 1 23.3 ? C4 1BN 1501 A 1 HETATM 7 C C5 1BN . . . B 2 -20.815 12.522 27.074 1 22.16 ? C5 1BN 1501 A 1 HETATM 8 C C6 1BN . . . B 2 -21.213 11.801 25.959 1 24.44 ? C6 1BN 1501 A 1 HETATM 9 C C7 1BN . . . B 2 -21.798 13.007 27.905 1 22.1 ? C7 1BN 1501 A 1 HETATM 10 C C8 1BN . . . B 2 -22.55 11.609 25.627 1 23.91 ? C8 1BN 1501 A 1 HETATM 11 C C9 1BN . . . B 2 -23.132 12.734 27.688 1 23.82 ? C9 1BN 1501 A 1 HETATM 12 C C10 1BN . . . B 2 -23.488 12.08 26.518 1 23.75 ? C10 1BN 1501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #