data_5S8O
#
_model_server_result.job_id            yiXaHtOm4N4N1KuL1Kx2tg 
_model_server_result.datetime_utc      '2024-10-10 06:25:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5s8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1504}' 
#
_entry.id    5S8O 
#
_exptl.entry_id    5S8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5S8O 
_cell.length_a            47.57 
_cell.length_b            57.17 
_cell.length_c            91.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5S8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,L 1 1 
B,D,E,F,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 L O HOH . A HOH 1601 4_457 E CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc2 L O HOH . A HOH 1614 4_457 E CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc3 D CA CA . B CA 1501 1_555 I O1 EDO . B EDO 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc4 D CA CA . B CA 1501 1_555 I O2 EDO . B EDO 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc5 D CA CA . B CA 1501 1_555 J O1 EDO . B EDO 1507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc6 D CA CA . B CA 1501 1_555 J O2 EDO . B EDO 1507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc7 D CA CA . B CA 1501 1_555 K O1 EDO . B EDO 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc8 D CA CA . B CA 1501 1_555 K O2 EDO . B EDO 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc9 D CA CA . B CA 1501 1_555 M O HOH . B HOH 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc10 D CA CA . B CA 1501 1_555 M O HOH . B HOH 1619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc11 E CA CA . B CA 1502 1_555 F O1 EDO . B EDO 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc12 E CA CA . B CA 1502 1_555 F O2 EDO . B EDO 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc13 E CA CA . B CA 1502 1_555 G O1 EDO . B EDO 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc14 E CA CA . B CA 1502 1_555 G O2 EDO . B EDO 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc15 E CA CA . B CA 1502 1_555 H O1 EDO . B EDO 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc16 E CA CA . B CA 1502 1_555 H O2 EDO . B EDO 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5S8O 
_atom_sites.fract_transf_matrix[1][1]    0.021022 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010972 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XM4 A 1 1501 1 XM4 LIG . 
D 3 CA B 1 1501 1 CA CA . 
E 3 CA B 1 1502 2 CA CA . 
F 4 EDO B 1 1503 1 EDO EDO . 
G 4 EDO B 1 1504 2 EDO EDO . 
H 4 EDO B 1 1505 3 EDO EDO . 
I 4 EDO B 1 1506 4 EDO EDO . 
J 4 EDO B 1 1507 5 EDO EDO . 
K 4 EDO B 1 1508 6 EDO EDO . 
L 5 HOH A 1 1601 88 HOH HOH . 
L 5 HOH A 2 1602 168 HOH HOH . 
L 5 HOH A 3 1603 136 HOH HOH . 
L 5 HOH A 4 1604 102 HOH HOH . 
L 5 HOH A 5 1605 28 HOH HOH . 
L 5 HOH A 6 1606 116 HOH HOH . 
L 5 HOH A 7 1607 143 HOH HOH . 
L 5 HOH A 8 1608 161 HOH HOH . 
L 5 HOH A 9 1609 53 HOH HOH . 
L 5 HOH A 10 1610 72 HOH HOH . 
L 5 HOH A 11 1611 169 HOH HOH . 
L 5 HOH A 12 1612 52 HOH HOH . 
L 5 HOH A 13 1613 17 HOH HOH . 
L 5 HOH A 14 1614 87 HOH HOH . 
L 5 HOH A 15 1615 184 HOH HOH . 
L 5 HOH A 16 1616 153 HOH HOH . 
L 5 HOH A 17 1617 62 HOH HOH . 
L 5 HOH A 18 1618 42 HOH HOH . 
L 5 HOH A 19 1619 144 HOH HOH . 
L 5 HOH A 20 1620 117 HOH HOH . 
L 5 HOH A 21 1621 79 HOH HOH . 
L 5 HOH A 22 1622 36 HOH HOH . 
L 5 HOH A 23 1623 74 HOH HOH . 
L 5 HOH A 24 1624 8 HOH HOH . 
L 5 HOH A 25 1625 86 HOH HOH . 
L 5 HOH A 26 1626 91 HOH HOH . 
L 5 HOH A 27 1627 37 HOH HOH . 
L 5 HOH A 28 1628 71 HOH HOH . 
L 5 HOH A 29 1629 35 HOH HOH . 
L 5 HOH A 30 1630 50 HOH HOH . 
L 5 HOH A 31 1631 180 HOH HOH . 
L 5 HOH A 32 1632 84 HOH HOH . 
L 5 HOH A 33 1633 18 HOH HOH . 
L 5 HOH A 34 1634 110 HOH HOH . 
L 5 HOH A 35 1635 14 HOH HOH . 
L 5 HOH A 36 1636 56 HOH HOH . 
L 5 HOH A 37 1637 108 HOH HOH . 
L 5 HOH A 38 1638 43 HOH HOH . 
L 5 HOH A 39 1639 34 HOH HOH . 
L 5 HOH A 40 1640 1 HOH HOH . 
L 5 HOH A 41 1641 38 HOH HOH . 
L 5 HOH A 42 1642 132 HOH HOH . 
L 5 HOH A 43 1643 176 HOH HOH . 
L 5 HOH A 44 1644 123 HOH HOH . 
L 5 HOH A 45 1645 22 HOH HOH . 
L 5 HOH A 46 1646 31 HOH HOH . 
L 5 HOH A 47 1647 135 HOH HOH . 
L 5 HOH A 48 1648 61 HOH HOH . 
L 5 HOH A 49 1649 171 HOH HOH . 
L 5 HOH A 50 1650 33 HOH HOH . 
L 5 HOH A 51 1651 96 HOH HOH . 
L 5 HOH A 52 1652 178 HOH HOH . 
L 5 HOH A 53 1653 68 HOH HOH . 
L 5 HOH A 54 1654 104 HOH HOH . 
L 5 HOH A 55 1655 47 HOH HOH . 
L 5 HOH A 56 1656 44 HOH HOH . 
L 5 HOH A 57 1657 93 HOH HOH . 
L 5 HOH A 58 1658 103 HOH HOH . 
L 5 HOH A 59 1659 106 HOH HOH . 
L 5 HOH A 60 1660 49 HOH HOH . 
L 5 HOH A 61 1661 48 HOH HOH . 
L 5 HOH A 62 1662 63 HOH HOH . 
L 5 HOH A 63 1663 24 HOH HOH . 
L 5 HOH A 64 1664 92 HOH HOH . 
L 5 HOH A 65 1665 185 HOH HOH . 
L 5 HOH A 66 1666 76 HOH HOH . 
L 5 HOH A 67 1667 67 HOH HOH . 
L 5 HOH A 68 1668 69 HOH HOH . 
L 5 HOH A 69 1669 55 HOH HOH . 
L 5 HOH A 70 1670 151 HOH HOH . 
L 5 HOH A 71 1671 134 HOH HOH . 
L 5 HOH A 72 1672 125 HOH HOH . 
L 5 HOH A 73 1673 2 HOH HOH . 
L 5 HOH A 74 1674 13 HOH HOH . 
L 5 HOH A 75 1675 5 HOH HOH . 
L 5 HOH A 76 1676 182 HOH HOH . 
L 5 HOH A 77 1677 115 HOH HOH . 
L 5 HOH A 78 1678 64 HOH HOH . 
L 5 HOH A 79 1679 101 HOH HOH . 
L 5 HOH A 80 1680 142 HOH HOH . 
L 5 HOH A 81 1681 58 HOH HOH . 
L 5 HOH A 82 1682 164 HOH HOH . 
L 5 HOH A 83 1683 119 HOH HOH . 
L 5 HOH A 84 1684 128 HOH HOH . 
L 5 HOH A 85 1685 131 HOH HOH . 
L 5 HOH A 86 1686 122 HOH HOH . 
M 5 HOH B 1 1601 127 HOH HOH . 
M 5 HOH B 2 1602 90 HOH HOH . 
M 5 HOH B 3 1603 60 HOH HOH . 
M 5 HOH B 4 1604 162 HOH HOH . 
M 5 HOH B 5 1605 40 HOH HOH . 
M 5 HOH B 6 1606 66 HOH HOH . 
M 5 HOH B 7 1607 111 HOH HOH . 
M 5 HOH B 8 1608 146 HOH HOH . 
M 5 HOH B 9 1609 30 HOH HOH . 
M 5 HOH B 10 1610 75 HOH HOH . 
M 5 HOH B 11 1611 11 HOH HOH . 
M 5 HOH B 12 1612 12 HOH HOH . 
M 5 HOH B 13 1613 181 HOH HOH . 
M 5 HOH B 14 1614 157 HOH HOH . 
M 5 HOH B 15 1615 32 HOH HOH . 
M 5 HOH B 16 1616 112 HOH HOH . 
M 5 HOH B 17 1617 29 HOH HOH . 
M 5 HOH B 18 1618 80 HOH HOH . 
M 5 HOH B 19 1619 89 HOH HOH . 
M 5 HOH B 20 1620 20 HOH HOH . 
M 5 HOH B 21 1621 100 HOH HOH . 
M 5 HOH B 22 1622 41 HOH HOH . 
M 5 HOH B 23 1623 175 HOH HOH . 
M 5 HOH B 24 1624 4 HOH HOH . 
M 5 HOH B 25 1625 165 HOH HOH . 
M 5 HOH B 26 1626 177 HOH HOH . 
M 5 HOH B 27 1627 6 HOH HOH . 
M 5 HOH B 28 1628 97 HOH HOH . 
M 5 HOH B 29 1629 7 HOH HOH . 
M 5 HOH B 30 1630 54 HOH HOH . 
M 5 HOH B 31 1631 148 HOH HOH . 
M 5 HOH B 32 1632 27 HOH HOH . 
M 5 HOH B 33 1633 26 HOH HOH . 
M 5 HOH B 34 1634 15 HOH HOH . 
M 5 HOH B 35 1635 98 HOH HOH . 
M 5 HOH B 36 1636 152 HOH HOH . 
M 5 HOH B 37 1637 179 HOH HOH . 
M 5 HOH B 38 1638 113 HOH HOH . 
M 5 HOH B 39 1639 138 HOH HOH . 
M 5 HOH B 40 1640 121 HOH HOH . 
M 5 HOH B 41 1641 81 HOH HOH . 
M 5 HOH B 42 1642 77 HOH HOH . 
M 5 HOH B 43 1643 9 HOH HOH . 
M 5 HOH B 44 1644 70 HOH HOH . 
M 5 HOH B 45 1645 141 HOH HOH . 
M 5 HOH B 46 1646 39 HOH HOH . 
M 5 HOH B 47 1647 10 HOH HOH . 
M 5 HOH B 48 1648 183 HOH HOH . 
M 5 HOH B 49 1649 25 HOH HOH . 
M 5 HOH B 50 1650 109 HOH HOH . 
M 5 HOH B 51 1651 126 HOH HOH . 
M 5 HOH B 52 1652 174 HOH HOH . 
M 5 HOH B 53 1653 114 HOH HOH . 
M 5 HOH B 54 1654 137 HOH HOH . 
M 5 HOH B 55 1655 124 HOH HOH . 
M 5 HOH B 56 1656 158 HOH HOH . 
M 5 HOH B 57 1657 105 HOH HOH . 
M 5 HOH B 58 1658 139 HOH HOH . 
M 5 HOH B 59 1659 107 HOH HOH . 
M 5 HOH B 60 1660 23 HOH HOH . 
M 5 HOH B 61 1661 65 HOH HOH . 
M 5 HOH B 62 1662 163 HOH HOH . 
M 5 HOH B 63 1663 99 HOH HOH . 
M 5 HOH B 64 1664 156 HOH HOH . 
M 5 HOH B 65 1665 149 HOH HOH . 
M 5 HOH B 66 1666 46 HOH HOH . 
M 5 HOH B 67 1667 166 HOH HOH . 
M 5 HOH B 68 1668 82 HOH HOH . 
M 5 HOH B 69 1669 45 HOH HOH . 
M 5 HOH B 70 1670 3 HOH HOH . 
M 5 HOH B 71 1671 172 HOH HOH . 
M 5 HOH B 72 1672 170 HOH HOH . 
M 5 HOH B 73 1673 167 HOH HOH . 
M 5 HOH B 74 1674 160 HOH HOH . 
M 5 HOH B 75 1675 85 HOH HOH . 
M 5 HOH B 76 1676 78 HOH HOH . 
M 5 HOH B 77 1677 145 HOH HOH . 
M 5 HOH B 78 1678 51 HOH HOH . 
M 5 HOH B 79 1679 16 HOH HOH . 
M 5 HOH B 80 1680 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 -9.482 6.911 91.609 1 28.42 ? C1 EDO 1504 B 1 
HETATM 2 O O1 EDO . . . G 4 -8.944 8.1 91.034 1 26.06 ? O1 EDO 1504 B 1 
HETATM 3 C C2 EDO . . . G 4 -10.705 7.176 92.393 1 25.62 ? C2 EDO 1504 B 1 
HETATM 4 O O2 EDO . . . G 4 -10.382 8.138 93.401 1 24.37 ? O2 EDO 1504 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#