data_5S8P # _model_server_result.job_id pbtxaUGELcuWlXB3kHXpEg _model_server_result.datetime_utc '2024-11-06 20:47:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1501}' # _entry.id 5S8P # _exptl.entry_id 5S8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5S8P _cell.length_a 47.29 _cell.length_b 57.32 _cell.length_c 90.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,L 1 1 B,D,E,F,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D CA CA . B CA 1501 1_555 I O1 EDO . B EDO 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc2 D CA CA . B CA 1501 1_555 I O2 EDO . B EDO 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 D CA CA . B CA 1501 1_555 J O1 EDO . B EDO 1507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 D CA CA . B CA 1501 1_555 J O2 EDO . B EDO 1507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 D CA CA . B CA 1501 1_555 K O1 EDO . B EDO 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 D CA CA . B CA 1501 1_555 K O2 EDO . B EDO 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 D CA CA . B CA 1501 1_555 M O HOH . B HOH 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc8 D CA CA . B CA 1501 1_555 M O HOH . B HOH 1612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc9 E CA CA . B CA 1502 1_555 F O1 EDO . B EDO 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc10 E CA CA . B CA 1502 1_555 F O2 EDO . B EDO 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc11 E CA CA . B CA 1502 1_555 G O1 EDO . B EDO 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc12 E CA CA . B CA 1502 1_555 G O2 EDO . B EDO 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc13 E CA CA . B CA 1502 1_555 H O1 EDO . B EDO 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc14 E CA CA . B CA 1502 1_555 H O2 EDO . B EDO 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc15 E CA CA . B CA 1502 1_555 M O HOH . B HOH 1662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc16 E CA CA . B CA 1502 1_555 M O HOH . B HOH 1675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5S8P _atom_sites.fract_transf_matrix[1][1] 0.021146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3PF A 1 1501 1 3PF LIG . D 3 CA B 1 1501 1 CA CA . E 3 CA B 1 1502 2 CA CA . F 4 EDO B 1 1503 1 EDO EDO . G 4 EDO B 1 1504 2 EDO EDO . H 4 EDO B 1 1505 3 EDO EDO . I 4 EDO B 1 1506 4 EDO EDO . J 4 EDO B 1 1507 5 EDO EDO . K 4 EDO B 1 1508 6 EDO EDO . L 5 HOH A 1 1601 94 HOH HOH . L 5 HOH A 2 1602 248 HOH HOH . L 5 HOH A 3 1603 207 HOH HOH . L 5 HOH A 4 1604 191 HOH HOH . L 5 HOH A 5 1605 266 HOH HOH . L 5 HOH A 6 1606 53 HOH HOH . L 5 HOH A 7 1607 136 HOH HOH . L 5 HOH A 8 1608 168 HOH HOH . L 5 HOH A 9 1609 135 HOH HOH . L 5 HOH A 10 1610 143 HOH HOH . L 5 HOH A 11 1611 71 HOH HOH . L 5 HOH A 12 1612 91 HOH HOH . L 5 HOH A 13 1613 240 HOH HOH . L 5 HOH A 14 1614 265 HOH HOH . L 5 HOH A 15 1615 102 HOH HOH . L 5 HOH A 16 1616 228 HOH HOH . L 5 HOH A 17 1617 218 HOH HOH . L 5 HOH A 18 1618 116 HOH HOH . L 5 HOH A 19 1619 222 HOH HOH . L 5 HOH A 20 1620 232 HOH HOH . L 5 HOH A 21 1621 17 HOH HOH . L 5 HOH A 22 1622 52 HOH HOH . L 5 HOH A 23 1623 242 HOH HOH . L 5 HOH A 24 1624 62 HOH HOH . L 5 HOH A 25 1625 200 HOH HOH . L 5 HOH A 26 1626 35 HOH HOH . L 5 HOH A 27 1627 255 HOH HOH . L 5 HOH A 28 1628 234 HOH HOH . L 5 HOH A 29 1629 14 HOH HOH . L 5 HOH A 30 1630 18 HOH HOH . L 5 HOH A 31 1631 169 HOH HOH . L 5 HOH A 32 1632 231 HOH HOH . L 5 HOH A 33 1633 223 HOH HOH . L 5 HOH A 34 1634 108 HOH HOH . L 5 HOH A 35 1635 153 HOH HOH . L 5 HOH A 36 1636 36 HOH HOH . L 5 HOH A 37 1637 170 HOH HOH . L 5 HOH A 38 1638 34 HOH HOH . L 5 HOH A 39 1639 98 HOH HOH . L 5 HOH A 40 1640 48 HOH HOH . L 5 HOH A 41 1641 42 HOH HOH . L 5 HOH A 42 1642 117 HOH HOH . L 5 HOH A 43 1643 61 HOH HOH . L 5 HOH A 44 1644 8 HOH HOH . L 5 HOH A 45 1645 192 HOH HOH . L 5 HOH A 46 1646 74 HOH HOH . L 5 HOH A 47 1647 22 HOH HOH . L 5 HOH A 48 1648 215 HOH HOH . L 5 HOH A 49 1649 186 HOH HOH . L 5 HOH A 50 1650 182 HOH HOH . L 5 HOH A 51 1651 63 HOH HOH . L 5 HOH A 52 1652 50 HOH HOH . L 5 HOH A 53 1653 56 HOH HOH . L 5 HOH A 54 1654 37 HOH HOH . L 5 HOH A 55 1655 72 HOH HOH . L 5 HOH A 56 1656 161 HOH HOH . L 5 HOH A 57 1657 43 HOH HOH . L 5 HOH A 58 1658 31 HOH HOH . L 5 HOH A 59 1659 151 HOH HOH . L 5 HOH A 60 1660 224 HOH HOH . L 5 HOH A 61 1661 162 HOH HOH . L 5 HOH A 62 1662 171 HOH HOH . L 5 HOH A 63 1663 178 HOH HOH . L 5 HOH A 64 1664 33 HOH HOH . L 5 HOH A 65 1665 225 HOH HOH . L 5 HOH A 66 1666 106 HOH HOH . L 5 HOH A 67 1667 110 HOH HOH . L 5 HOH A 68 1668 47 HOH HOH . L 5 HOH A 69 1669 132 HOH HOH . L 5 HOH A 70 1670 246 HOH HOH . L 5 HOH A 71 1671 188 HOH HOH . L 5 HOH A 72 1672 38 HOH HOH . L 5 HOH A 73 1673 69 HOH HOH . L 5 HOH A 74 1674 237 HOH HOH . L 5 HOH A 75 1675 177 HOH HOH . L 5 HOH A 76 1676 24 HOH HOH . L 5 HOH A 77 1677 79 HOH HOH . L 5 HOH A 78 1678 55 HOH HOH . L 5 HOH A 79 1679 172 HOH HOH . L 5 HOH A 80 1680 233 HOH HOH . L 5 HOH A 81 1681 44 HOH HOH . L 5 HOH A 82 1682 2 HOH HOH . L 5 HOH A 83 1683 13 HOH HOH . L 5 HOH A 84 1684 123 HOH HOH . L 5 HOH A 85 1685 103 HOH HOH . L 5 HOH A 86 1686 92 HOH HOH . L 5 HOH A 87 1687 140 HOH HOH . L 5 HOH A 88 1688 5 HOH HOH . L 5 HOH A 89 1689 144 HOH HOH . L 5 HOH A 90 1690 125 HOH HOH . L 5 HOH A 91 1691 68 HOH HOH . L 5 HOH A 92 1692 195 HOH HOH . L 5 HOH A 93 1693 134 HOH HOH . L 5 HOH A 94 1694 115 HOH HOH . L 5 HOH A 95 1695 67 HOH HOH . L 5 HOH A 96 1696 264 HOH HOH . L 5 HOH A 97 1697 206 HOH HOH . L 5 HOH A 98 1698 212 HOH HOH . L 5 HOH A 99 1699 194 HOH HOH . L 5 HOH A 100 1700 249 HOH HOH . L 5 HOH A 101 1701 154 HOH HOH . L 5 HOH A 102 1702 64 HOH HOH . L 5 HOH A 103 1703 261 HOH HOH . L 5 HOH A 104 1704 81 HOH HOH . L 5 HOH A 105 1705 58 HOH HOH . L 5 HOH A 106 1706 82 HOH HOH . L 5 HOH A 107 1707 259 HOH HOH . L 5 HOH A 108 1708 173 HOH HOH . L 5 HOH A 109 1709 243 HOH HOH . L 5 HOH A 110 1710 269 HOH HOH . L 5 HOH A 111 1711 175 HOH HOH . L 5 HOH A 112 1712 119 HOH HOH . L 5 HOH A 113 1713 271 HOH HOH . L 5 HOH A 114 1714 80 HOH HOH . L 5 HOH A 115 1715 229 HOH HOH . L 5 HOH A 116 1716 159 HOH HOH . L 5 HOH A 117 1717 160 HOH HOH . L 5 HOH A 118 1718 156 HOH HOH . L 5 HOH A 119 1719 158 HOH HOH . M 5 HOH B 1 1601 210 HOH HOH . M 5 HOH B 2 1602 196 HOH HOH . M 5 HOH B 3 1603 40 HOH HOH . M 5 HOH B 4 1604 28 HOH HOH . M 5 HOH B 5 1605 89 HOH HOH . M 5 HOH B 6 1606 235 HOH HOH . M 5 HOH B 7 1607 247 HOH HOH . M 5 HOH B 8 1608 66 HOH HOH . M 5 HOH B 9 1609 236 HOH HOH . M 5 HOH B 10 1610 146 HOH HOH . M 5 HOH B 11 1611 209 HOH HOH . M 5 HOH B 12 1612 90 HOH HOH . M 5 HOH B 13 1613 244 HOH HOH . M 5 HOH B 14 1614 193 HOH HOH . M 5 HOH B 15 1615 205 HOH HOH . M 5 HOH B 16 1616 187 HOH HOH . M 5 HOH B 17 1617 254 HOH HOH . M 5 HOH B 18 1618 11 HOH HOH . M 5 HOH B 19 1619 41 HOH HOH . M 5 HOH B 20 1620 256 HOH HOH . M 5 HOH B 21 1621 208 HOH HOH . M 5 HOH B 22 1622 20 HOH HOH . M 5 HOH B 23 1623 60 HOH HOH . M 5 HOH B 24 1624 213 HOH HOH . M 5 HOH B 25 1625 77 HOH HOH . M 5 HOH B 26 1626 185 HOH HOH . M 5 HOH B 27 1627 238 HOH HOH . M 5 HOH B 28 1628 29 HOH HOH . M 5 HOH B 29 1629 112 HOH HOH . M 5 HOH B 30 1630 26 HOH HOH . M 5 HOH B 31 1631 4 HOH HOH . M 5 HOH B 32 1632 230 HOH HOH . M 5 HOH B 33 1633 15 HOH HOH . M 5 HOH B 34 1634 12 HOH HOH . M 5 HOH B 35 1635 183 HOH HOH . M 5 HOH B 36 1636 111 HOH HOH . M 5 HOH B 37 1637 6 HOH HOH . M 5 HOH B 38 1638 65 HOH HOH . M 5 HOH B 39 1639 199 HOH HOH . M 5 HOH B 40 1640 27 HOH HOH . M 5 HOH B 41 1641 226 HOH HOH . M 5 HOH B 42 1642 219 HOH HOH . M 5 HOH B 43 1643 75 HOH HOH . M 5 HOH B 44 1644 152 HOH HOH . M 5 HOH B 45 1645 70 HOH HOH . M 5 HOH B 46 1646 7 HOH HOH . M 5 HOH B 47 1647 54 HOH HOH . M 5 HOH B 48 1648 114 HOH HOH . M 5 HOH B 49 1649 30 HOH HOH . M 5 HOH B 50 1650 109 HOH HOH . M 5 HOH B 51 1651 97 HOH HOH . M 5 HOH B 52 1652 157 HOH HOH . M 5 HOH B 53 1653 139 HOH HOH . M 5 HOH B 54 1654 216 HOH HOH . M 5 HOH B 55 1655 148 HOH HOH . M 5 HOH B 56 1656 138 HOH HOH . M 5 HOH B 57 1657 180 HOH HOH . M 5 HOH B 58 1658 190 HOH HOH . M 5 HOH B 59 1659 203 HOH HOH . M 5 HOH B 60 1660 174 HOH HOH . M 5 HOH B 61 1661 141 HOH HOH . M 5 HOH B 62 1662 88 HOH HOH . M 5 HOH B 63 1663 121 HOH HOH . M 5 HOH B 64 1664 9 HOH HOH . M 5 HOH B 65 1665 241 HOH HOH . M 5 HOH B 66 1666 113 HOH HOH . M 5 HOH B 67 1667 227 HOH HOH . M 5 HOH B 68 1668 1 HOH HOH . M 5 HOH B 69 1669 165 HOH HOH . M 5 HOH B 70 1670 25 HOH HOH . M 5 HOH B 71 1671 245 HOH HOH . M 5 HOH B 72 1672 10 HOH HOH . M 5 HOH B 73 1673 147 HOH HOH . M 5 HOH B 74 1674 252 HOH HOH . M 5 HOH B 75 1675 87 HOH HOH . M 5 HOH B 76 1676 124 HOH HOH . M 5 HOH B 77 1677 166 HOH HOH . M 5 HOH B 78 1678 23 HOH HOH . M 5 HOH B 79 1679 39 HOH HOH . M 5 HOH B 80 1680 59 HOH HOH . M 5 HOH B 81 1681 250 HOH HOH . M 5 HOH B 82 1682 126 HOH HOH . M 5 HOH B 83 1683 220 HOH HOH . M 5 HOH B 84 1684 107 HOH HOH . M 5 HOH B 85 1685 179 HOH HOH . M 5 HOH B 86 1686 217 HOH HOH . M 5 HOH B 87 1687 104 HOH HOH . M 5 HOH B 88 1688 202 HOH HOH . M 5 HOH B 89 1689 46 HOH HOH . M 5 HOH B 90 1690 176 HOH HOH . M 5 HOH B 91 1691 99 HOH HOH . M 5 HOH B 92 1692 137 HOH HOH . M 5 HOH B 93 1693 197 HOH HOH . M 5 HOH B 94 1694 221 HOH HOH . M 5 HOH B 95 1695 105 HOH HOH . M 5 HOH B 96 1696 150 HOH HOH . M 5 HOH B 97 1697 93 HOH HOH . M 5 HOH B 98 1698 201 HOH HOH . M 5 HOH B 99 1699 163 HOH HOH . M 5 HOH B 100 1700 198 HOH HOH . M 5 HOH B 101 1701 214 HOH HOH . M 5 HOH B 102 1702 211 HOH HOH . M 5 HOH B 103 1703 45 HOH HOH . M 5 HOH B 104 1704 253 HOH HOH . M 5 HOH B 105 1705 3 HOH HOH . M 5 HOH B 106 1706 263 HOH HOH . M 5 HOH B 107 1707 260 HOH HOH . M 5 HOH B 108 1708 145 HOH HOH . M 5 HOH B 109 1709 204 HOH HOH . M 5 HOH B 110 1710 268 HOH HOH . M 5 HOH B 111 1711 85 HOH HOH . M 5 HOH B 112 1712 142 HOH HOH . M 5 HOH B 113 1713 78 HOH HOH . M 5 HOH B 114 1714 51 HOH HOH . M 5 HOH B 115 1715 84 HOH HOH . M 5 HOH B 116 1716 167 HOH HOH . M 5 HOH B 117 1717 128 HOH HOH . M 5 HOH B 118 1718 184 HOH HOH . M 5 HOH B 119 1719 164 HOH HOH . M 5 HOH B 120 1720 189 HOH HOH . M 5 HOH B 121 1721 267 HOH HOH . M 5 HOH B 122 1722 251 HOH HOH . M 5 HOH B 123 1723 16 HOH HOH . M 5 HOH B 124 1724 239 HOH HOH . M 5 HOH B 125 1725 262 HOH HOH . M 5 HOH B 126 1726 122 HOH HOH . M 5 HOH B 127 1727 257 HOH HOH . M 5 HOH B 128 1728 258 HOH HOH . M 5 HOH B 129 1729 270 HOH HOH . M 5 HOH B 130 1730 86 HOH HOH . M 5 HOH B 131 1731 181 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.309 _atom_site.Cartn_y 17.829 _atom_site.Cartn_z 93.153 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #