data_5S8W # _model_server_result.job_id o3xUddZ-YobdUQh817YhoQ _model_server_result.datetime_utc '2024-11-29 17:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S8W # _exptl.entry_id 5S8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2,4-difluorophenyl)-4-(furan-2-carbonyl)piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.12 _cell.angle_gamma 90 _cell.entry_id 5S8W _cell.length_a 81.69 _cell.length_b 27.14 _cell.length_c 55.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H15 F2 N3 O3' _chem_comp.formula_weight 335.305 _chem_comp.id Y1D _chem_comp.mon_nstd_flag . _chem_comp.name N-(2,4-difluorophenyl)-4-(furan-2-carbonyl)piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C Y1D doub 376 n n N C Y1D sing 377 n n C1 N Y1D sing 378 n n C1 C2 Y1D doub 379 n y C2 C3 Y1D sing 380 n y C3 C4 Y1D doub 381 n y F C4 Y1D sing 382 n n C4 C5 Y1D sing 383 n y C5 C6 Y1D doub 384 n y C6 C1 Y1D sing 385 n y F1 C6 Y1D sing 386 n n C N1 Y1D sing 387 n n N1 C7 Y1D sing 388 n n C7 C8 Y1D sing 389 n n C8 N2 Y1D sing 390 n n N2 C9 Y1D sing 391 n n C9 O1 Y1D doub 392 n n C10 C9 Y1D sing 393 n n C10 C11 Y1D doub 394 n y C11 C12 Y1D sing 395 n y C12 C13 Y1D doub 396 n y C13 O2 Y1D sing 397 n y O2 C10 Y1D sing 398 n y C14 N2 Y1D sing 399 n n C15 C14 Y1D sing 400 n n N1 C15 Y1D sing 401 n n C5 H3 Y1D sing 402 n n C7 H5 Y1D sing 403 n n C7 H4 Y1D sing 404 n n C8 H7 Y1D sing 405 n n C8 H6 Y1D sing 406 n n C13 H10 Y1D sing 407 n n C15 H14 Y1D sing 408 n n C15 H13 Y1D sing 409 n n N H Y1D sing 410 n n C11 H8 Y1D sing 411 n n C12 H9 Y1D sing 412 n n C14 H12 Y1D sing 413 n n C14 H11 Y1D sing 414 n n C2 H1 Y1D sing 415 n n C3 H2 Y1D sing 416 n n # _atom_sites.entry_id 5S8W _atom_sites.fract_transf_matrix[1][1] 0.012241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002185 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y1D A 1 1501 1501 Y1D LIG . C 3 HOH A 1 1601 128 HOH HOH . C 3 HOH A 2 1602 172 HOH HOH . C 3 HOH A 3 1603 197 HOH HOH . C 3 HOH A 4 1604 85 HOH HOH . C 3 HOH A 5 1605 98 HOH HOH . C 3 HOH A 6 1606 151 HOH HOH . C 3 HOH A 7 1607 183 HOH HOH . C 3 HOH A 8 1608 184 HOH HOH . C 3 HOH A 9 1609 162 HOH HOH . C 3 HOH A 10 1610 26 HOH HOH . C 3 HOH A 11 1611 167 HOH HOH . C 3 HOH A 12 1612 17 HOH HOH . C 3 HOH A 13 1613 187 HOH HOH . C 3 HOH A 14 1614 89 HOH HOH . C 3 HOH A 15 1615 135 HOH HOH . C 3 HOH A 16 1616 121 HOH HOH . C 3 HOH A 17 1617 174 HOH HOH . C 3 HOH A 18 1618 44 HOH HOH . C 3 HOH A 19 1619 124 HOH HOH . C 3 HOH A 20 1620 86 HOH HOH . C 3 HOH A 21 1621 7 HOH HOH . C 3 HOH A 22 1622 74 HOH HOH . C 3 HOH A 23 1623 10 HOH HOH . C 3 HOH A 24 1624 129 HOH HOH . C 3 HOH A 25 1625 31 HOH HOH . C 3 HOH A 26 1626 21 HOH HOH . C 3 HOH A 27 1627 123 HOH HOH . C 3 HOH A 28 1628 70 HOH HOH . C 3 HOH A 29 1629 33 HOH HOH . C 3 HOH A 30 1630 159 HOH HOH . C 3 HOH A 31 1631 50 HOH HOH . C 3 HOH A 32 1632 12 HOH HOH . C 3 HOH A 33 1633 65 HOH HOH . C 3 HOH A 34 1634 16 HOH HOH . C 3 HOH A 35 1635 179 HOH HOH . C 3 HOH A 36 1636 141 HOH HOH . C 3 HOH A 37 1637 55 HOH HOH . C 3 HOH A 38 1638 25 HOH HOH . C 3 HOH A 39 1639 171 HOH HOH . C 3 HOH A 40 1640 140 HOH HOH . C 3 HOH A 41 1641 83 HOH HOH . C 3 HOH A 42 1642 84 HOH HOH . C 3 HOH A 43 1643 9 HOH HOH . C 3 HOH A 44 1644 36 HOH HOH . C 3 HOH A 45 1645 160 HOH HOH . C 3 HOH A 46 1646 41 HOH HOH . C 3 HOH A 47 1647 20 HOH HOH . C 3 HOH A 48 1648 176 HOH HOH . C 3 HOH A 49 1649 75 HOH HOH . C 3 HOH A 50 1650 3 HOH HOH . C 3 HOH A 51 1651 182 HOH HOH . C 3 HOH A 52 1652 130 HOH HOH . C 3 HOH A 53 1653 76 HOH HOH . C 3 HOH A 54 1654 139 HOH HOH . C 3 HOH A 55 1655 35 HOH HOH . C 3 HOH A 56 1656 77 HOH HOH . C 3 HOH A 57 1657 64 HOH HOH . C 3 HOH A 58 1658 108 HOH HOH . C 3 HOH A 59 1659 157 HOH HOH . C 3 HOH A 60 1660 14 HOH HOH . C 3 HOH A 61 1661 161 HOH HOH . C 3 HOH A 62 1662 45 HOH HOH . C 3 HOH A 63 1663 92 HOH HOH . C 3 HOH A 64 1664 4 HOH HOH . C 3 HOH A 65 1665 94 HOH HOH . C 3 HOH A 66 1666 5 HOH HOH . C 3 HOH A 67 1667 143 HOH HOH . C 3 HOH A 68 1668 54 HOH HOH . C 3 HOH A 69 1669 82 HOH HOH . C 3 HOH A 70 1670 80 HOH HOH . C 3 HOH A 71 1671 1 HOH HOH . C 3 HOH A 72 1672 62 HOH HOH . C 3 HOH A 73 1673 59 HOH HOH . C 3 HOH A 74 1674 39 HOH HOH . C 3 HOH A 75 1675 52 HOH HOH . C 3 HOH A 76 1676 28 HOH HOH . C 3 HOH A 77 1677 19 HOH HOH . C 3 HOH A 78 1678 11 HOH HOH . C 3 HOH A 79 1679 191 HOH HOH . C 3 HOH A 80 1680 6 HOH HOH . C 3 HOH A 81 1681 23 HOH HOH . C 3 HOH A 82 1682 119 HOH HOH . C 3 HOH A 83 1683 149 HOH HOH . C 3 HOH A 84 1684 113 HOH HOH . C 3 HOH A 85 1685 29 HOH HOH . C 3 HOH A 86 1686 27 HOH HOH . C 3 HOH A 87 1687 106 HOH HOH . C 3 HOH A 88 1688 81 HOH HOH . C 3 HOH A 89 1689 60 HOH HOH . C 3 HOH A 90 1690 56 HOH HOH . C 3 HOH A 91 1691 180 HOH HOH . C 3 HOH A 92 1692 48 HOH HOH . C 3 HOH A 93 1693 71 HOH HOH . C 3 HOH A 94 1694 105 HOH HOH . C 3 HOH A 95 1695 152 HOH HOH . C 3 HOH A 96 1696 96 HOH HOH . C 3 HOH A 97 1697 69 HOH HOH . C 3 HOH A 98 1698 63 HOH HOH . C 3 HOH A 99 1699 177 HOH HOH . C 3 HOH A 100 1700 138 HOH HOH . C 3 HOH A 101 1701 37 HOH HOH . C 3 HOH A 102 1702 40 HOH HOH . C 3 HOH A 103 1703 15 HOH HOH . C 3 HOH A 104 1704 137 HOH HOH . C 3 HOH A 105 1705 116 HOH HOH . C 3 HOH A 106 1706 158 HOH HOH . C 3 HOH A 107 1707 122 HOH HOH . C 3 HOH A 108 1708 67 HOH HOH . C 3 HOH A 109 1709 42 HOH HOH . C 3 HOH A 110 1710 91 HOH HOH . C 3 HOH A 111 1711 118 HOH HOH . C 3 HOH A 112 1712 126 HOH HOH . C 3 HOH A 113 1713 132 HOH HOH . C 3 HOH A 114 1714 163 HOH HOH . C 3 HOH A 115 1715 154 HOH HOH . C 3 HOH A 116 1716 134 HOH HOH . C 3 HOH A 117 1717 90 HOH HOH . C 3 HOH A 118 1718 178 HOH HOH . C 3 HOH A 119 1719 145 HOH HOH . C 3 HOH A 120 1720 173 HOH HOH . C 3 HOH A 121 1721 88 HOH HOH . C 3 HOH A 122 1722 93 HOH HOH . C 3 HOH A 123 1723 22 HOH HOH . C 3 HOH A 124 1724 144 HOH HOH . C 3 HOH A 125 1725 38 HOH HOH . C 3 HOH A 126 1726 49 HOH HOH . C 3 HOH A 127 1727 101 HOH HOH . C 3 HOH A 128 1728 131 HOH HOH . C 3 HOH A 129 1729 136 HOH HOH . C 3 HOH A 130 1730 150 HOH HOH . C 3 HOH A 131 1731 53 HOH HOH . C 3 HOH A 132 1732 2 HOH HOH . C 3 HOH A 133 1733 57 HOH HOH . C 3 HOH A 134 1734 34 HOH HOH . C 3 HOH A 135 1735 120 HOH HOH . C 3 HOH A 136 1736 127 HOH HOH . C 3 HOH A 137 1737 66 HOH HOH . C 3 HOH A 138 1738 72 HOH HOH . C 3 HOH A 139 1739 125 HOH HOH . C 3 HOH A 140 1740 165 HOH HOH . C 3 HOH A 141 1741 117 HOH HOH . C 3 HOH A 142 1742 95 HOH HOH . C 3 HOH A 143 1743 13 HOH HOH . C 3 HOH A 144 1744 146 HOH HOH . C 3 HOH A 145 1745 166 HOH HOH . C 3 HOH A 146 1746 109 HOH HOH . C 3 HOH A 147 1747 181 HOH HOH . C 3 HOH A 148 1748 142 HOH HOH . C 3 HOH A 149 1749 153 HOH HOH . C 3 HOH A 150 1750 175 HOH HOH . C 3 HOH A 151 1751 202 HOH HOH . C 3 HOH A 152 1752 164 HOH HOH . C 3 HOH A 153 1753 156 HOH HOH . C 3 HOH A 154 1754 104 HOH HOH . C 3 HOH A 155 1755 114 HOH HOH . C 3 HOH A 156 1756 115 HOH HOH . C 3 HOH A 157 1757 185 HOH HOH . C 3 HOH A 158 1758 8 HOH HOH . C 3 HOH A 159 1759 186 HOH HOH . C 3 HOH A 160 1760 30 HOH HOH . C 3 HOH A 161 1761 199 HOH HOH . C 3 HOH A 162 1762 107 HOH HOH . C 3 HOH A 163 1763 61 HOH HOH . C 3 HOH A 164 1764 170 HOH HOH . C 3 HOH A 165 1765 99 HOH HOH . C 3 HOH A 166 1766 188 HOH HOH . C 3 HOH A 167 1767 190 HOH HOH . C 3 HOH A 168 1768 51 HOH HOH . C 3 HOH A 169 1769 193 HOH HOH . C 3 HOH A 170 1770 148 HOH HOH . C 3 HOH A 171 1771 198 HOH HOH . C 3 HOH A 172 1772 112 HOH HOH . C 3 HOH A 173 1773 168 HOH HOH . C 3 HOH A 174 1774 78 HOH HOH . C 3 HOH A 175 1775 110 HOH HOH . C 3 HOH A 176 1776 103 HOH HOH . C 3 HOH A 177 1777 68 HOH HOH . C 3 HOH A 178 1778 102 HOH HOH . C 3 HOH A 179 1779 46 HOH HOH . C 3 HOH A 180 1780 73 HOH HOH . C 3 HOH A 181 1781 201 HOH HOH . C 3 HOH A 182 1782 196 HOH HOH . C 3 HOH A 183 1783 100 HOH HOH . C 3 HOH A 184 1784 200 HOH HOH . C 3 HOH A 185 1785 192 HOH HOH . C 3 HOH A 186 1786 189 HOH HOH . C 3 HOH A 187 1787 97 HOH HOH . C 3 HOH A 188 1788 111 HOH HOH . C 3 HOH A 189 1789 87 HOH HOH . C 3 HOH A 190 1790 203 HOH HOH . C 3 HOH A 191 1791 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 Y1D . . . B 2 -18.041 15.521 26.471 0.36 27.53 ? N1 Y1D 1501 A 1 HETATM 2 C C4 Y1D . . . B 2 -13.382 20.044 27.124 0.36 34.71 ? C4 Y1D 1501 A 1 HETATM 3 C C5 Y1D . . . B 2 -13.734 19.164 28.164 0.36 33.81 ? C5 Y1D 1501 A 1 HETATM 4 C C6 Y1D . . . B 2 -14.616 18.102 27.862 0.36 33.12 ? C6 Y1D 1501 A 1 HETATM 5 C C7 Y1D . . . B 2 -18.203 14.361 27.433 0.36 26.77 ? C7 Y1D 1501 A 1 HETATM 6 C C8 Y1D . . . B 2 -18.619 13.016 26.808 0.36 25.45 ? C8 Y1D 1501 A 1 HETATM 7 C C10 Y1D . . . B 2 -21.617 12.3 25.912 0.36 19.59 ? C10 Y1D 1501 A 1 HETATM 8 C C13 Y1D . . . B 2 -23.047 12.799 27.457 0.36 19.29 ? C13 Y1D 1501 A 1 HETATM 9 C C15 Y1D . . . B 2 -17.89 15.18 25.044 0.36 25.86 ? C15 Y1D 1501 A 1 HETATM 10 N N Y1D . . . B 2 -16.016 16.877 26.243 0.36 31.96 ? N Y1D 1501 A 1 HETATM 11 C C Y1D . . . B 2 -17.236 16.674 26.917 0.36 30.34 ? C Y1D 1501 A 1 HETATM 12 O O Y1D . . . B 2 -17.598 17.433 27.798 0.36 33.35 ? O Y1D 1501 A 1 HETATM 13 C C1 Y1D . . . B 2 -15.14 17.947 26.552 0.36 33.12 ? C1 Y1D 1501 A 1 HETATM 14 C C11 Y1D . . . B 2 -22.76 11.641 25.609 0.36 18.53 ? C11 Y1D 1501 A 1 HETATM 15 C C12 Y1D . . . B 2 -23.69 11.982 26.612 0.36 17.6 ? C12 Y1D 1501 A 1 HETATM 16 C C14 Y1D . . . B 2 -18.688 14.011 24.573 0.36 25.37 ? C14 Y1D 1501 A 1 HETATM 17 C C2 Y1D . . . B 2 -14.762 18.852 25.545 0.36 34.01 ? C2 Y1D 1501 A 1 HETATM 18 C C3 Y1D . . . B 2 -13.879 19.896 25.82 0.36 35.06 ? C3 Y1D 1501 A 1 HETATM 19 C C9 Y1D . . . B 2 -20.382 12.462 25.182 0.36 21.04 ? C9 Y1D 1501 A 1 HETATM 20 F F Y1D . . . B 2 -12.568 21.05 27.376 0.36 36.5 ? F Y1D 1501 A 1 HETATM 21 F F1 Y1D . . . B 2 -14.944 17.211 28.818 0.36 29.5 ? F1 Y1D 1501 A 1 HETATM 22 N N2 Y1D . . . B 2 -19.45 13.341 25.641 0.36 23.28 ? N2 Y1D 1501 A 1 HETATM 23 O O1 Y1D . . . B 2 -20.195 11.922 24.13 0.36 20.04 ? O1 Y1D 1501 A 1 HETATM 24 O O2 Y1D . . . B 2 -21.744 13.009 27.044 0.36 17.84 ? O2 Y1D 1501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 646 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #