data_5S8Y # _model_server_result.job_id f3A12QKmsYSqtyoO0EhbMQ _model_server_result.datetime_utc '2024-10-19 21:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S8Y # _exptl.entry_id 5S8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.319 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(cyclopropylmethyl)-4-(furan-2-carbonyl)piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.91 _cell.angle_gamma 90 _cell.entry_id 5S8Y _cell.length_a 80.945 _cell.length_b 27.217 _cell.length_c 55.874 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H19 N3 O3' _chem_comp.formula_weight 277.319 _chem_comp.id Y1J _chem_comp.mon_nstd_flag . _chem_comp.name N-(cyclopropylmethyl)-4-(furan-2-carbonyl)piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C Y1J doub 376 n n N C Y1J sing 377 n n C1 N Y1J sing 378 n n C2 C1 Y1J sing 379 n n C2 C3 Y1J sing 380 n n C3 C4 Y1J sing 381 n n C4 C2 Y1J sing 382 n n C N1 Y1J sing 383 n n N1 C5 Y1J sing 384 n n C5 C6 Y1J sing 385 n n C6 N2 Y1J sing 386 n n N2 C7 Y1J sing 387 n n C7 O1 Y1J doub 388 n n C8 C7 Y1J sing 389 n n C8 C9 Y1J doub 390 n y C9 C10 Y1J sing 391 n y C10 C11 Y1J doub 392 n y C11 O2 Y1J sing 393 n y O2 C8 Y1J sing 394 n y C12 N2 Y1J sing 395 n n C13 C12 Y1J sing 396 n n N1 C13 Y1J sing 397 n n C4 H6 Y1J sing 398 n n C4 H7 Y1J sing 399 n n C5 H8 Y1J sing 400 n n C5 H9 Y1J sing 401 n n C6 H11 Y1J sing 402 n n C6 H10 Y1J sing 403 n n C10 H13 Y1J sing 404 n n C13 H18 Y1J sing 405 n n C13 H17 Y1J sing 406 n n N H Y1J sing 407 n n C1 H1 Y1J sing 408 n n C1 H2 Y1J sing 409 n n C11 H14 Y1J sing 410 n n C12 H15 Y1J sing 411 n n C12 H16 Y1J sing 412 n n C2 H3 Y1J sing 413 n n C3 H4 Y1J sing 414 n n C3 H5 Y1J sing 415 n n C9 H12 Y1J sing 416 n n # _atom_sites.entry_id 5S8Y _atom_sites.fract_transf_matrix[1][1] 0.012354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y1J A 1 1501 1501 Y1J LIG . C 3 HOH A 1 1601 42 HOH HOH . C 3 HOH A 2 1602 151 HOH HOH . C 3 HOH A 3 1603 98 HOH HOH . C 3 HOH A 4 1604 85 HOH HOH . C 3 HOH A 5 1605 160 HOH HOH . C 3 HOH A 6 1606 183 HOH HOH . C 3 HOH A 7 1607 100 HOH HOH . C 3 HOH A 8 1608 26 HOH HOH . C 3 HOH A 9 1609 72 HOH HOH . C 3 HOH A 10 1610 172 HOH HOH . C 3 HOH A 11 1611 89 HOH HOH . C 3 HOH A 12 1612 197 HOH HOH . C 3 HOH A 13 1613 154 HOH HOH . C 3 HOH A 14 1614 162 HOH HOH . C 3 HOH A 15 1615 159 HOH HOH . C 3 HOH A 16 1616 211 HOH HOH . C 3 HOH A 17 1617 7 HOH HOH . C 3 HOH A 18 1618 99 HOH HOH . C 3 HOH A 19 1619 121 HOH HOH . C 3 HOH A 20 1620 135 HOH HOH . C 3 HOH A 21 1621 70 HOH HOH . C 3 HOH A 22 1622 141 HOH HOH . C 3 HOH A 23 1623 25 HOH HOH . C 3 HOH A 24 1624 140 HOH HOH . C 3 HOH A 25 1625 124 HOH HOH . C 3 HOH A 26 1626 17 HOH HOH . C 3 HOH A 27 1627 184 HOH HOH . C 3 HOH A 28 1628 94 HOH HOH . C 3 HOH A 29 1629 55 HOH HOH . C 3 HOH A 30 1630 173 HOH HOH . C 3 HOH A 31 1631 187 HOH HOH . C 3 HOH A 32 1632 36 HOH HOH . C 3 HOH A 33 1633 74 HOH HOH . C 3 HOH A 34 1634 33 HOH HOH . C 3 HOH A 35 1635 10 HOH HOH . C 3 HOH A 36 1636 12 HOH HOH . C 3 HOH A 37 1637 50 HOH HOH . C 3 HOH A 38 1638 171 HOH HOH . C 3 HOH A 39 1639 65 HOH HOH . C 3 HOH A 40 1640 4 HOH HOH . C 3 HOH A 41 1641 39 HOH HOH . C 3 HOH A 42 1642 174 HOH HOH . C 3 HOH A 43 1643 20 HOH HOH . C 3 HOH A 44 1644 145 HOH HOH . C 3 HOH A 45 1645 152 HOH HOH . C 3 HOH A 46 1646 92 HOH HOH . C 3 HOH A 47 1647 45 HOH HOH . C 3 HOH A 48 1648 182 HOH HOH . C 3 HOH A 49 1649 75 HOH HOH . C 3 HOH A 50 1650 123 HOH HOH . C 3 HOH A 51 1651 76 HOH HOH . C 3 HOH A 52 1652 3 HOH HOH . C 3 HOH A 53 1653 83 HOH HOH . C 3 HOH A 54 1654 14 HOH HOH . C 3 HOH A 55 1655 130 HOH HOH . C 3 HOH A 56 1656 9 HOH HOH . C 3 HOH A 57 1657 77 HOH HOH . C 3 HOH A 58 1658 21 HOH HOH . C 3 HOH A 59 1659 6 HOH HOH . C 3 HOH A 60 1660 11 HOH HOH . C 3 HOH A 61 1661 16 HOH HOH . C 3 HOH A 62 1662 41 HOH HOH . C 3 HOH A 63 1663 64 HOH HOH . C 3 HOH A 64 1664 31 HOH HOH . C 3 HOH A 65 1665 167 HOH HOH . C 3 HOH A 66 1666 139 HOH HOH . C 3 HOH A 67 1667 54 HOH HOH . C 3 HOH A 68 1668 108 HOH HOH . C 3 HOH A 69 1669 59 HOH HOH . C 3 HOH A 70 1670 176 HOH HOH . C 3 HOH A 71 1671 27 HOH HOH . C 3 HOH A 72 1672 1 HOH HOH . C 3 HOH A 73 1673 142 HOH HOH . C 3 HOH A 74 1674 150 HOH HOH . C 3 HOH A 75 1675 35 HOH HOH . C 3 HOH A 76 1676 105 HOH HOH . C 3 HOH A 77 1677 82 HOH HOH . C 3 HOH A 78 1678 63 HOH HOH . C 3 HOH A 79 1679 180 HOH HOH . C 3 HOH A 80 1680 91 HOH HOH . C 3 HOH A 81 1681 122 HOH HOH . C 3 HOH A 82 1682 69 HOH HOH . C 3 HOH A 83 1683 71 HOH HOH . C 3 HOH A 84 1684 80 HOH HOH . C 3 HOH A 85 1685 119 HOH HOH . C 3 HOH A 86 1686 161 HOH HOH . C 3 HOH A 87 1687 60 HOH HOH . C 3 HOH A 88 1688 52 HOH HOH . C 3 HOH A 89 1689 28 HOH HOH . C 3 HOH A 90 1690 5 HOH HOH . C 3 HOH A 91 1691 84 HOH HOH . C 3 HOH A 92 1692 81 HOH HOH . C 3 HOH A 93 1693 101 HOH HOH . C 3 HOH A 94 1694 178 HOH HOH . C 3 HOH A 95 1695 18 HOH HOH . C 3 HOH A 96 1696 158 HOH HOH . C 3 HOH A 97 1697 86 HOH HOH . C 3 HOH A 98 1698 29 HOH HOH . C 3 HOH A 99 1699 113 HOH HOH . C 3 HOH A 100 1700 23 HOH HOH . C 3 HOH A 101 1701 56 HOH HOH . C 3 HOH A 102 1702 62 HOH HOH . C 3 HOH A 103 1703 15 HOH HOH . C 3 HOH A 104 1704 90 HOH HOH . C 3 HOH A 105 1705 19 HOH HOH . C 3 HOH A 106 1706 40 HOH HOH . C 3 HOH A 107 1707 191 HOH HOH . C 3 HOH A 108 1708 138 HOH HOH . C 3 HOH A 109 1709 67 HOH HOH . C 3 HOH A 110 1710 117 HOH HOH . C 3 HOH A 111 1711 143 HOH HOH . C 3 HOH A 112 1712 129 HOH HOH . C 3 HOH A 113 1713 116 HOH HOH . C 3 HOH A 114 1714 48 HOH HOH . C 3 HOH A 115 1715 157 HOH HOH . C 3 HOH A 116 1716 134 HOH HOH . C 3 HOH A 117 1717 177 HOH HOH . C 3 HOH A 118 1718 165 HOH HOH . C 3 HOH A 119 1719 179 HOH HOH . C 3 HOH A 120 1720 2 HOH HOH . C 3 HOH A 121 1721 57 HOH HOH . C 3 HOH A 122 1722 22 HOH HOH . C 3 HOH A 123 1723 88 HOH HOH . C 3 HOH A 124 1724 118 HOH HOH . C 3 HOH A 125 1725 125 HOH HOH . C 3 HOH A 126 1726 38 HOH HOH . C 3 HOH A 127 1727 53 HOH HOH . C 3 HOH A 128 1728 109 HOH HOH . C 3 HOH A 129 1729 49 HOH HOH . C 3 HOH A 130 1730 34 HOH HOH . C 3 HOH A 131 1731 44 HOH HOH . C 3 HOH A 132 1732 131 HOH HOH . C 3 HOH A 133 1733 13 HOH HOH . C 3 HOH A 134 1734 95 HOH HOH . C 3 HOH A 135 1735 137 HOH HOH . C 3 HOH A 136 1736 146 HOH HOH . C 3 HOH A 137 1737 164 HOH HOH . C 3 HOH A 138 1738 120 HOH HOH . C 3 HOH A 139 1739 163 HOH HOH . C 3 HOH A 140 1740 106 HOH HOH . C 3 HOH A 141 1741 136 HOH HOH . C 3 HOH A 142 1742 126 HOH HOH . C 3 HOH A 143 1743 144 HOH HOH . C 3 HOH A 144 1744 153 HOH HOH . C 3 HOH A 145 1745 96 HOH HOH . C 3 HOH A 146 1746 175 HOH HOH . C 3 HOH A 147 1747 181 HOH HOH . C 3 HOH A 148 1748 127 HOH HOH . C 3 HOH A 149 1749 195 HOH HOH . C 3 HOH A 150 1750 166 HOH HOH . C 3 HOH A 151 1751 194 HOH HOH . C 3 HOH A 152 1752 202 HOH HOH . C 3 HOH A 153 1753 37 HOH HOH . C 3 HOH A 154 1754 104 HOH HOH . C 3 HOH A 155 1755 114 HOH HOH . C 3 HOH A 156 1756 8 HOH HOH . C 3 HOH A 157 1757 112 HOH HOH . C 3 HOH A 158 1758 186 HOH HOH . C 3 HOH A 159 1759 185 HOH HOH . C 3 HOH A 160 1760 93 HOH HOH . C 3 HOH A 161 1761 30 HOH HOH . C 3 HOH A 162 1762 156 HOH HOH . C 3 HOH A 163 1763 133 HOH HOH . C 3 HOH A 164 1764 115 HOH HOH . C 3 HOH A 165 1765 193 HOH HOH . C 3 HOH A 166 1766 190 HOH HOH . C 3 HOH A 167 1767 61 HOH HOH . C 3 HOH A 168 1768 107 HOH HOH . C 3 HOH A 169 1769 51 HOH HOH . C 3 HOH A 170 1770 198 HOH HOH . C 3 HOH A 171 1771 78 HOH HOH . C 3 HOH A 172 1772 132 HOH HOH . C 3 HOH A 173 1773 188 HOH HOH . C 3 HOH A 174 1774 110 HOH HOH . C 3 HOH A 175 1775 199 HOH HOH . C 3 HOH A 176 1776 68 HOH HOH . C 3 HOH A 177 1777 170 HOH HOH . C 3 HOH A 178 1778 46 HOH HOH . C 3 HOH A 179 1779 73 HOH HOH . C 3 HOH A 180 1780 168 HOH HOH . C 3 HOH A 181 1781 102 HOH HOH . C 3 HOH A 182 1782 103 HOH HOH . C 3 HOH A 183 1783 149 HOH HOH . C 3 HOH A 184 1784 196 HOH HOH . C 3 HOH A 185 1785 148 HOH HOH . C 3 HOH A 186 1786 201 HOH HOH . C 3 HOH A 187 1787 192 HOH HOH . C 3 HOH A 188 1788 111 HOH HOH . C 3 HOH A 189 1789 189 HOH HOH . C 3 HOH A 190 1790 87 HOH HOH . C 3 HOH A 191 1791 200 HOH HOH . C 3 HOH A 192 1792 97 HOH HOH . C 3 HOH A 193 1793 203 HOH HOH . C 3 HOH A 194 1794 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 Y1J . . . B 2 -17.454 15.439 26.327 0.53 11.05 ? N1 Y1J 1501 A 1 HETATM 2 C C4 Y1J . . . B 2 -16.482 20.078 25.446 0.53 12.65 ? C4 Y1J 1501 A 1 HETATM 3 C C5 Y1J . . . B 2 -18.433 14.886 27.279 0.53 10.66 ? C5 Y1J 1501 A 1 HETATM 4 C C6 Y1J . . . B 2 -18.595 13.38 27.079 0.53 10.73 ? C6 Y1J 1501 A 1 HETATM 5 C C7 Y1J . . . B 2 -20.005 12.522 25.141 0.53 11.06 ? C7 Y1J 1501 A 1 HETATM 6 C C8 Y1J . . . B 2 -21.255 12.406 25.907 0.53 10.69 ? C8 Y1J 1501 A 1 HETATM 7 C C10 Y1J . . . B 2 -23.326 12.097 26.626 0.53 10.08 ? C10 Y1J 1501 A 1 HETATM 8 C C13 Y1J . . . B 2 -17.752 15.082 24.936 0.53 10.77 ? C13 Y1J 1501 A 1 HETATM 9 N N Y1J . . . B 2 -16.102 17.233 25.738 0.53 11.51 ? N Y1J 1501 A 1 HETATM 10 C C Y1J . . . B 2 -16.654 16.482 26.707 0.53 11.31 ? C Y1J 1501 A 1 HETATM 11 O O Y1J . . . B 2 -16.462 16.739 27.888 0.53 11.3 ? O Y1J 1501 A 1 HETATM 12 C C1 Y1J . . . B 2 -15.026 18.179 26.003 0.53 12.07 ? C1 Y1J 1501 A 1 HETATM 13 C C11 Y1J . . . B 2 -22.734 12.986 27.402 0.53 10.6 ? C11 Y1J 1501 A 1 HETATM 14 C C12 Y1J . . . B 2 -17.856 13.592 24.804 0.53 10.96 ? C12 Y1J 1501 A 1 HETATM 15 C C2 Y1J . . . B 2 -15.577 19.514 26.456 0.53 13.01 ? C2 Y1J 1501 A 1 HETATM 16 C C3 Y1J . . . B 2 -15.224 20.793 25.776 0.53 14.24 ? C3 Y1J 1501 A 1 HETATM 17 C C9 Y1J . . . B 2 -22.389 11.707 25.659 0.53 10.7 ? C9 Y1J 1501 A 1 HETATM 18 N N2 Y1J . . . B 2 -18.922 13.099 25.677 0.53 10.87 ? N2 Y1J 1501 A 1 HETATM 19 O O1 Y1J . . . B 2 -20.001 12.091 23.998 0.53 11.41 ? O1 Y1J 1501 A 1 HETATM 20 O O2 Y1J . . . B 2 -21.43 13.201 26.996 0.53 10.7 ? O2 Y1J 1501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 20 #