data_5S9B # _model_server_result.job_id QgC9SAZMNAb98cuhsjifbw _model_server_result.datetime_utc '2025-07-16 12:35:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S9B # _exptl.entry_id 5S9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.147 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-methoxybenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.53 _cell.angle_gamma 90 _cell.entry_id 5S9B _cell.length_a 81.427 _cell.length_b 26.963 _cell.length_c 55.763 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H8 O3' _chem_comp.formula_weight 152.147 _chem_comp.id OVM _chem_comp.mon_nstd_flag . _chem_comp.name '3-methoxybenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 OVM doub 237 n n C02 O01 OVM sing 238 n n C02 C04 OVM sing 239 n n C11 C04 OVM doub 240 n y C11 C08 OVM sing 241 n y O09 C08 OVM sing 242 n n O09 C10 OVM sing 243 n n C04 C05 OVM sing 244 n y C08 C07 OVM doub 245 n y C05 C06 OVM doub 246 n y C07 C06 OVM sing 247 n y C05 H1 OVM sing 248 n n C06 H2 OVM sing 249 n n C07 H3 OVM sing 250 n n C10 H4 OVM sing 251 n n C10 H5 OVM sing 252 n n C10 H6 OVM sing 253 n n C11 H7 OVM sing 254 n n O01 H8 OVM sing 255 n n # _atom_sites.entry_id 5S9B _atom_sites.fract_transf_matrix[1][1] 0.012281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002283 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OVM A 1 1501 1501 OVM LIG . C 3 HOH A 1 1601 195 HOH HOH . C 3 HOH A 2 1602 128 HOH HOH . C 3 HOH A 3 1603 89 HOH HOH . C 3 HOH A 4 1604 85 HOH HOH . C 3 HOH A 5 1605 7 HOH HOH . C 3 HOH A 6 1606 121 HOH HOH . C 3 HOH A 7 1607 98 HOH HOH . C 3 HOH A 8 1608 183 HOH HOH . C 3 HOH A 9 1609 140 HOH HOH . C 3 HOH A 10 1610 162 HOH HOH . C 3 HOH A 11 1611 10 HOH HOH . C 3 HOH A 12 1612 197 HOH HOH . C 3 HOH A 13 1613 151 HOH HOH . C 3 HOH A 14 1614 187 HOH HOH . C 3 HOH A 15 1615 101 HOH HOH . C 3 HOH A 16 1616 176 HOH HOH . C 3 HOH A 17 1617 41 HOH HOH . C 3 HOH A 18 1618 2 HOH HOH . C 3 HOH A 19 1619 50 HOH HOH . C 3 HOH A 20 1620 25 HOH HOH . C 3 HOH A 21 1621 141 HOH HOH . C 3 HOH A 22 1622 124 HOH HOH . C 3 HOH A 23 1623 83 HOH HOH . C 3 HOH A 24 1624 17 HOH HOH . C 3 HOH A 25 1625 33 HOH HOH . C 3 HOH A 26 1626 74 HOH HOH . C 3 HOH A 27 1627 171 HOH HOH . C 3 HOH A 28 1628 76 HOH HOH . C 3 HOH A 29 1629 9 HOH HOH . C 3 HOH A 30 1630 65 HOH HOH . C 3 HOH A 31 1631 36 HOH HOH . C 3 HOH A 32 1632 174 HOH HOH . C 3 HOH A 33 1633 123 HOH HOH . C 3 HOH A 34 1634 135 HOH HOH . C 3 HOH A 35 1635 167 HOH HOH . C 3 HOH A 36 1636 94 HOH HOH . C 3 HOH A 37 1637 1 HOH HOH . C 3 HOH A 38 1638 12 HOH HOH . C 3 HOH A 39 1639 172 HOH HOH . C 3 HOH A 40 1640 45 HOH HOH . C 3 HOH A 41 1641 184 HOH HOH . C 3 HOH A 42 1642 31 HOH HOH . C 3 HOH A 43 1643 20 HOH HOH . C 3 HOH A 44 1644 154 HOH HOH . C 3 HOH A 45 1645 180 HOH HOH . C 3 HOH A 46 1646 179 HOH HOH . C 3 HOH A 47 1647 108 HOH HOH . C 3 HOH A 48 1648 60 HOH HOH . C 3 HOH A 49 1649 160 HOH HOH . C 3 HOH A 50 1650 59 HOH HOH . C 3 HOH A 51 1651 139 HOH HOH . C 3 HOH A 52 1652 14 HOH HOH . C 3 HOH A 53 1653 3 HOH HOH . C 3 HOH A 54 1654 144 HOH HOH . C 3 HOH A 55 1655 35 HOH HOH . C 3 HOH A 56 1656 182 HOH HOH . C 3 HOH A 57 1657 84 HOH HOH . C 3 HOH A 58 1658 42 HOH HOH . C 3 HOH A 59 1659 159 HOH HOH . C 3 HOH A 60 1660 16 HOH HOH . C 3 HOH A 61 1661 165 HOH HOH . C 3 HOH A 62 1662 92 HOH HOH . C 3 HOH A 63 1663 75 HOH HOH . C 3 HOH A 64 1664 55 HOH HOH . C 3 HOH A 65 1665 28 HOH HOH . C 3 HOH A 66 1666 56 HOH HOH . C 3 HOH A 67 1667 4 HOH HOH . C 3 HOH A 68 1668 177 HOH HOH . C 3 HOH A 69 1669 5 HOH HOH . C 3 HOH A 70 1670 62 HOH HOH . C 3 HOH A 71 1671 66 HOH HOH . C 3 HOH A 72 1672 6 HOH HOH . C 3 HOH A 73 1673 157 HOH HOH . C 3 HOH A 74 1674 64 HOH HOH . C 3 HOH A 75 1675 69 HOH HOH . C 3 HOH A 76 1676 63 HOH HOH . C 3 HOH A 77 1677 21 HOH HOH . C 3 HOH A 78 1678 130 HOH HOH . C 3 HOH A 79 1679 39 HOH HOH . C 3 HOH A 80 1680 54 HOH HOH . C 3 HOH A 81 1681 44 HOH HOH . C 3 HOH A 82 1682 70 HOH HOH . C 3 HOH A 83 1683 113 HOH HOH . C 3 HOH A 84 1684 149 HOH HOH . C 3 HOH A 85 1685 116 HOH HOH . C 3 HOH A 86 1686 82 HOH HOH . C 3 HOH A 87 1687 27 HOH HOH . C 3 HOH A 88 1688 191 HOH HOH . C 3 HOH A 89 1689 11 HOH HOH . C 3 HOH A 90 1690 152 HOH HOH . C 3 HOH A 91 1691 26 HOH HOH . C 3 HOH A 92 1692 129 HOH HOH . C 3 HOH A 93 1693 19 HOH HOH . C 3 HOH A 94 1694 52 HOH HOH . C 3 HOH A 95 1695 138 HOH HOH . C 3 HOH A 96 1696 15 HOH HOH . C 3 HOH A 97 1697 77 HOH HOH . C 3 HOH A 98 1698 93 HOH HOH . C 3 HOH A 99 1699 122 HOH HOH . C 3 HOH A 100 1700 142 HOH HOH . C 3 HOH A 101 1701 81 HOH HOH . C 3 HOH A 102 1702 106 HOH HOH . C 3 HOH A 103 1703 23 HOH HOH . C 3 HOH A 104 1704 38 HOH HOH . C 3 HOH A 105 1705 40 HOH HOH . C 3 HOH A 106 1706 127 HOH HOH . C 3 HOH A 107 1707 29 HOH HOH . C 3 HOH A 108 1708 105 HOH HOH . C 3 HOH A 109 1709 80 HOH HOH . C 3 HOH A 110 1710 67 HOH HOH . C 3 HOH A 111 1711 71 HOH HOH . C 3 HOH A 112 1712 18 HOH HOH . C 3 HOH A 113 1713 90 HOH HOH . C 3 HOH A 114 1714 161 HOH HOH . C 3 HOH A 115 1715 119 HOH HOH . C 3 HOH A 116 1716 48 HOH HOH . C 3 HOH A 117 1717 37 HOH HOH . C 3 HOH A 118 1718 131 HOH HOH . C 3 HOH A 119 1719 178 HOH HOH . C 3 HOH A 120 1720 58 HOH HOH . C 3 HOH A 121 1721 86 HOH HOH . C 3 HOH A 122 1722 120 HOH HOH . C 3 HOH A 123 1723 57 HOH HOH . C 3 HOH A 124 1724 95 HOH HOH . C 3 HOH A 125 1725 208 HOH HOH . C 3 HOH A 126 1726 22 HOH HOH . C 3 HOH A 127 1727 158 HOH HOH . C 3 HOH A 128 1728 137 HOH HOH . C 3 HOH A 129 1729 96 HOH HOH . C 3 HOH A 130 1730 132 HOH HOH . C 3 HOH A 131 1731 72 HOH HOH . C 3 HOH A 132 1732 24 HOH HOH . C 3 HOH A 133 1733 136 HOH HOH . C 3 HOH A 134 1734 134 HOH HOH . C 3 HOH A 135 1735 181 HOH HOH . C 3 HOH A 136 1736 117 HOH HOH . C 3 HOH A 137 1737 91 HOH HOH . C 3 HOH A 138 1738 34 HOH HOH . C 3 HOH A 139 1739 88 HOH HOH . C 3 HOH A 140 1740 49 HOH HOH . C 3 HOH A 141 1741 125 HOH HOH . C 3 HOH A 142 1742 175 HOH HOH . C 3 HOH A 143 1743 53 HOH HOH . C 3 HOH A 144 1744 109 HOH HOH . C 3 HOH A 145 1745 163 HOH HOH . C 3 HOH A 146 1746 118 HOH HOH . C 3 HOH A 147 1747 146 HOH HOH . C 3 HOH A 148 1748 13 HOH HOH . C 3 HOH A 149 1749 133 HOH HOH . C 3 HOH A 150 1750 145 HOH HOH . C 3 HOH A 151 1751 155 HOH HOH . C 3 HOH A 152 1752 150 HOH HOH . C 3 HOH A 153 1753 173 HOH HOH . C 3 HOH A 154 1754 153 HOH HOH . C 3 HOH A 155 1755 126 HOH HOH . C 3 HOH A 156 1756 143 HOH HOH . C 3 HOH A 157 1757 202 HOH HOH . C 3 HOH A 158 1758 194 HOH HOH . C 3 HOH A 159 1759 164 HOH HOH . C 3 HOH A 160 1760 199 HOH HOH . C 3 HOH A 161 1761 166 HOH HOH . C 3 HOH A 162 1762 115 HOH HOH . C 3 HOH A 163 1763 114 HOH HOH . C 3 HOH A 164 1764 8 HOH HOH . C 3 HOH A 165 1765 185 HOH HOH . C 3 HOH A 166 1766 107 HOH HOH . C 3 HOH A 167 1767 30 HOH HOH . C 3 HOH A 168 1768 51 HOH HOH . C 3 HOH A 169 1769 61 HOH HOH . C 3 HOH A 170 1770 186 HOH HOH . C 3 HOH A 171 1771 112 HOH HOH . C 3 HOH A 172 1772 198 HOH HOH . C 3 HOH A 173 1773 156 HOH HOH . C 3 HOH A 174 1774 190 HOH HOH . C 3 HOH A 175 1775 188 HOH HOH . C 3 HOH A 176 1776 104 HOH HOH . C 3 HOH A 177 1777 68 HOH HOH . C 3 HOH A 178 1778 193 HOH HOH . C 3 HOH A 179 1779 168 HOH HOH . C 3 HOH A 180 1780 110 HOH HOH . C 3 HOH A 181 1781 170 HOH HOH . C 3 HOH A 182 1782 102 HOH HOH . C 3 HOH A 183 1783 103 HOH HOH . C 3 HOH A 184 1784 78 HOH HOH . C 3 HOH A 185 1785 46 HOH HOH . C 3 HOH A 186 1786 73 HOH HOH . C 3 HOH A 187 1787 99 HOH HOH . C 3 HOH A 188 1788 201 HOH HOH . C 3 HOH A 189 1789 100 HOH HOH . C 3 HOH A 190 1790 148 HOH HOH . C 3 HOH A 191 1791 111 HOH HOH . C 3 HOH A 192 1792 196 HOH HOH . C 3 HOH A 193 1793 200 HOH HOH . C 3 HOH A 194 1794 189 HOH HOH . C 3 HOH A 195 1795 97 HOH HOH . C 3 HOH A 196 1796 87 HOH HOH . C 3 HOH A 197 1797 192 HOH HOH . C 3 HOH A 198 1798 203 HOH HOH . C 3 HOH A 199 1799 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 OVM . . . B 2 -23.829 13.052 28.012 0.44 16.03 ? C02 OVM 1501 A 1 HETATM 2 C C04 OVM . . . B 2 -22.939 12.503 26.942 0.44 16.35 ? C04 OVM 1501 A 1 HETATM 3 C C05 OVM . . . B 2 -23.493 11.816 25.866 0.44 16.34 ? C05 OVM 1501 A 1 HETATM 4 C C06 OVM . . . B 2 -22.682 11.333 24.849 0.44 15.89 ? C06 OVM 1501 A 1 HETATM 5 C C07 OVM . . . B 2 -21.317 11.541 24.884 0.44 16.75 ? C07 OVM 1501 A 1 HETATM 6 C C08 OVM . . . B 2 -20.764 12.239 25.945 0.44 17.28 ? C08 OVM 1501 A 1 HETATM 7 C C10 OVM . . . B 2 -18.782 13.206 26.903 0.44 17.99 ? C10 OVM 1501 A 1 HETATM 8 C C11 OVM . . . B 2 -21.562 12.709 26.981 0.44 16.45 ? C11 OVM 1501 A 1 HETATM 9 O O01 OVM . . . B 2 -23.247 13.522 29.088 0.44 17.14 ? O01 OVM 1501 A 1 HETATM 10 O O03 OVM . . . B 2 -25.03 13.044 27.872 0.44 15.76 ? O03 OVM 1501 A 1 HETATM 11 O O09 OVM . . . B 2 -19.411 12.462 25.855 0.44 18.06 ? O09 OVM 1501 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #