data_5S9C # _model_server_result.job_id 0iBvzDwJx-UOeq1ZIaXCNQ _model_server_result.datetime_utc '2024-11-22 23:07:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5S9C # _exptl.entry_id 5S9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(cyclopropylmethyl)-4-(thiophene-2-carbonyl)piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.18 _cell.angle_gamma 90 _cell.entry_id 5S9C _cell.length_a 81.534 _cell.length_b 27.235 _cell.length_c 55.707 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H19 N3 O2 S' _chem_comp.formula_weight 293.385 _chem_comp.id Y0D _chem_comp.mon_nstd_flag . _chem_comp.name N-(cyclopropylmethyl)-4-(thiophene-2-carbonyl)piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 Y0D doub 376 n n C1 N1 Y0D sing 377 n n N1 C2 Y0D sing 378 n n C2 C3 Y0D sing 379 n n C3 C4 Y0D sing 380 n n C4 C5 Y0D sing 381 n n C1 N2 Y0D sing 382 n n N2 C6 Y0D sing 383 n n C6 C7 Y0D sing 384 n n C7 N3 Y0D sing 385 n n N3 C8 Y0D sing 386 n n C8 O2 Y0D doub 387 n n C8 C9 Y0D sing 388 n n C9 C10 Y0D doub 389 n y C10 C11 Y0D sing 390 n y C11 C12 Y0D doub 391 n y C12 S1 Y0D sing 392 n y N3 C13 Y0D sing 393 n n C13 C14 Y0D sing 394 n n C3 C5 Y0D sing 395 n n N2 C14 Y0D sing 396 n n C9 S1 Y0D sing 397 n y N1 H1 Y0D sing 398 n n C4 H5 Y0D sing 399 n n C4 H6 Y0D sing 400 n n C5 H7 Y0D sing 401 n n C5 H8 Y0D sing 402 n n C6 H10 Y0D sing 403 n n C6 H9 Y0D sing 404 n n C7 H12 Y0D sing 405 n n C7 H11 Y0D sing 406 n n C10 H13 Y0D sing 407 n n C13 H17 Y0D sing 408 n n C13 H16 Y0D sing 409 n n C11 H14 Y0D sing 410 n n C12 H15 Y0D sing 411 n n C14 H19 Y0D sing 412 n n C14 H18 Y0D sing 413 n n C2 H3 Y0D sing 414 n n C2 H2 Y0D sing 415 n n C3 H4 Y0D sing 416 n n # _atom_sites.entry_id 5S9C _atom_sites.fract_transf_matrix[1][1] 0.012265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y0D A 1 1501 1501 Y0D LIG . C 3 HOH A 1 1601 128 HOH HOH . C 3 HOH A 2 1602 195 HOH HOH . C 3 HOH A 3 1603 151 HOH HOH . C 3 HOH A 4 1604 167 HOH HOH . C 3 HOH A 5 1605 93 HOH HOH . C 3 HOH A 6 1606 42 HOH HOH . C 3 HOH A 7 1607 140 HOH HOH . C 3 HOH A 8 1608 98 HOH HOH . C 3 HOH A 9 1609 197 HOH HOH . C 3 HOH A 10 1610 174 HOH HOH . C 3 HOH A 11 1611 85 HOH HOH . C 3 HOH A 12 1612 89 HOH HOH . C 3 HOH A 13 1613 55 HOH HOH . C 3 HOH A 14 1614 100 HOH HOH . C 3 HOH A 15 1615 20 HOH HOH . C 3 HOH A 16 1616 172 HOH HOH . C 3 HOH A 17 1617 179 HOH HOH . C 3 HOH A 18 1618 7 HOH HOH . C 3 HOH A 19 1619 124 HOH HOH . C 3 HOH A 20 1620 99 HOH HOH . C 3 HOH A 21 1621 121 HOH HOH . C 3 HOH A 22 1622 65 HOH HOH . C 3 HOH A 23 1623 187 HOH HOH . C 3 HOH A 24 1624 183 HOH HOH . C 3 HOH A 25 1625 70 HOH HOH . C 3 HOH A 26 1626 94 HOH HOH . C 3 HOH A 27 1627 160 HOH HOH . C 3 HOH A 28 1628 118 HOH HOH . C 3 HOH A 29 1629 152 HOH HOH . C 3 HOH A 30 1630 92 HOH HOH . C 3 HOH A 31 1631 25 HOH HOH . C 3 HOH A 32 1632 33 HOH HOH . C 3 HOH A 33 1633 123 HOH HOH . C 3 HOH A 34 1634 10 HOH HOH . C 3 HOH A 35 1635 76 HOH HOH . C 3 HOH A 36 1636 171 HOH HOH . C 3 HOH A 37 1637 21 HOH HOH . C 3 HOH A 38 1638 144 HOH HOH . C 3 HOH A 39 1639 163 HOH HOH . C 3 HOH A 40 1640 50 HOH HOH . C 3 HOH A 41 1641 31 HOH HOH . C 3 HOH A 42 1642 14 HOH HOH . C 3 HOH A 43 1643 141 HOH HOH . C 3 HOH A 44 1644 83 HOH HOH . C 3 HOH A 45 1645 41 HOH HOH . C 3 HOH A 46 1646 35 HOH HOH . C 3 HOH A 47 1647 162 HOH HOH . C 3 HOH A 48 1648 180 HOH HOH . C 3 HOH A 49 1649 139 HOH HOH . C 3 HOH A 50 1650 182 HOH HOH . C 3 HOH A 51 1651 16 HOH HOH . C 3 HOH A 52 1652 36 HOH HOH . C 3 HOH A 53 1653 130 HOH HOH . C 3 HOH A 54 1654 129 HOH HOH . C 3 HOH A 55 1655 75 HOH HOH . C 3 HOH A 56 1656 9 HOH HOH . C 3 HOH A 57 1657 17 HOH HOH . C 3 HOH A 58 1658 56 HOH HOH . C 3 HOH A 59 1659 159 HOH HOH . C 3 HOH A 60 1660 45 HOH HOH . C 3 HOH A 61 1661 3 HOH HOH . C 3 HOH A 62 1662 52 HOH HOH . C 3 HOH A 63 1663 143 HOH HOH . C 3 HOH A 64 1664 2 HOH HOH . C 3 HOH A 65 1665 135 HOH HOH . C 3 HOH A 66 1666 122 HOH HOH . C 3 HOH A 67 1667 77 HOH HOH . C 3 HOH A 68 1668 4 HOH HOH . C 3 HOH A 69 1669 1 HOH HOH . C 3 HOH A 70 1670 59 HOH HOH . C 3 HOH A 71 1671 86 HOH HOH . C 3 HOH A 72 1672 82 HOH HOH . C 3 HOH A 73 1673 39 HOH HOH . C 3 HOH A 74 1674 62 HOH HOH . C 3 HOH A 75 1675 145 HOH HOH . C 3 HOH A 76 1676 84 HOH HOH . C 3 HOH A 77 1677 64 HOH HOH . C 3 HOH A 78 1678 91 HOH HOH . C 3 HOH A 79 1679 108 HOH HOH . C 3 HOH A 80 1680 80 HOH HOH . C 3 HOH A 81 1681 54 HOH HOH . C 3 HOH A 82 1682 5 HOH HOH . C 3 HOH A 83 1683 28 HOH HOH . C 3 HOH A 84 1684 138 HOH HOH . C 3 HOH A 85 1685 15 HOH HOH . C 3 HOH A 86 1686 19 HOH HOH . C 3 HOH A 87 1687 40 HOH HOH . C 3 HOH A 88 1688 178 HOH HOH . C 3 HOH A 89 1689 6 HOH HOH . C 3 HOH A 90 1690 63 HOH HOH . C 3 HOH A 91 1691 29 HOH HOH . C 3 HOH A 92 1692 23 HOH HOH . C 3 HOH A 93 1693 60 HOH HOH . C 3 HOH A 94 1694 27 HOH HOH . C 3 HOH A 95 1695 71 HOH HOH . C 3 HOH A 96 1696 11 HOH HOH . C 3 HOH A 97 1697 161 HOH HOH . C 3 HOH A 98 1698 113 HOH HOH . C 3 HOH A 99 1699 69 HOH HOH . C 3 HOH A 100 1700 119 HOH HOH . C 3 HOH A 101 1701 150 HOH HOH . C 3 HOH A 102 1702 105 HOH HOH . C 3 HOH A 103 1703 37 HOH HOH . C 3 HOH A 104 1704 194 HOH HOH . C 3 HOH A 105 1705 125 HOH HOH . C 3 HOH A 106 1706 95 HOH HOH . C 3 HOH A 107 1707 177 HOH HOH . C 3 HOH A 108 1708 88 HOH HOH . C 3 HOH A 109 1709 106 HOH HOH . C 3 HOH A 110 1710 158 HOH HOH . C 3 HOH A 111 1711 48 HOH HOH . C 3 HOH A 112 1712 120 HOH HOH . C 3 HOH A 113 1713 96 HOH HOH . C 3 HOH A 114 1714 134 HOH HOH . C 3 HOH A 115 1715 72 HOH HOH . C 3 HOH A 116 1716 22 HOH HOH . C 3 HOH A 117 1717 116 HOH HOH . C 3 HOH A 118 1718 137 HOH HOH . C 3 HOH A 119 1719 131 HOH HOH . C 3 HOH A 120 1720 191 HOH HOH . C 3 HOH A 121 1721 38 HOH HOH . C 3 HOH A 122 1722 74 HOH HOH . C 3 HOH A 123 1723 13 HOH HOH . C 3 HOH A 124 1724 53 HOH HOH . C 3 HOH A 125 1725 67 HOH HOH . C 3 HOH A 126 1726 146 HOH HOH . C 3 HOH A 127 1727 136 HOH HOH . C 3 HOH A 128 1728 90 HOH HOH . C 3 HOH A 129 1729 173 HOH HOH . C 3 HOH A 130 1730 49 HOH HOH . C 3 HOH A 131 1731 165 HOH HOH . C 3 HOH A 132 1732 57 HOH HOH . C 3 HOH A 133 1733 117 HOH HOH . C 3 HOH A 134 1734 176 HOH HOH . C 3 HOH A 135 1735 12 HOH HOH . C 3 HOH A 136 1736 34 HOH HOH . C 3 HOH A 137 1737 181 HOH HOH . C 3 HOH A 138 1738 101 HOH HOH . C 3 HOH A 139 1739 184 HOH HOH . C 3 HOH A 140 1740 168 HOH HOH . C 3 HOH A 141 1741 44 HOH HOH . C 3 HOH A 142 1742 109 HOH HOH . C 3 HOH A 143 1743 202 HOH HOH . C 3 HOH A 144 1744 127 HOH HOH . C 3 HOH A 145 1745 26 HOH HOH . C 3 HOH A 146 1746 81 HOH HOH . C 3 HOH A 147 1747 133 HOH HOH . C 3 HOH A 148 1748 157 HOH HOH . C 3 HOH A 149 1749 153 HOH HOH . C 3 HOH A 150 1750 126 HOH HOH . C 3 HOH A 151 1751 166 HOH HOH . C 3 HOH A 152 1752 175 HOH HOH . C 3 HOH A 153 1753 154 HOH HOH . C 3 HOH A 154 1754 132 HOH HOH . C 3 HOH A 155 1755 155 HOH HOH . C 3 HOH A 156 1756 185 HOH HOH . C 3 HOH A 157 1757 66 HOH HOH . C 3 HOH A 158 1758 104 HOH HOH . C 3 HOH A 159 1759 8 HOH HOH . C 3 HOH A 160 1760 114 HOH HOH . C 3 HOH A 161 1761 186 HOH HOH . C 3 HOH A 162 1762 30 HOH HOH . C 3 HOH A 163 1763 198 HOH HOH . C 3 HOH A 164 1764 115 HOH HOH . C 3 HOH A 165 1765 149 HOH HOH . C 3 HOH A 166 1766 164 HOH HOH . C 3 HOH A 167 1767 199 HOH HOH . C 3 HOH A 168 1768 190 HOH HOH . C 3 HOH A 169 1769 156 HOH HOH . C 3 HOH A 170 1770 61 HOH HOH . C 3 HOH A 171 1771 107 HOH HOH . C 3 HOH A 172 1772 51 HOH HOH . C 3 HOH A 173 1773 193 HOH HOH . C 3 HOH A 174 1774 103 HOH HOH . C 3 HOH A 175 1775 110 HOH HOH . C 3 HOH A 176 1776 188 HOH HOH . C 3 HOH A 177 1777 112 HOH HOH . C 3 HOH A 178 1778 78 HOH HOH . C 3 HOH A 179 1779 68 HOH HOH . C 3 HOH A 180 1780 102 HOH HOH . C 3 HOH A 181 1781 46 HOH HOH . C 3 HOH A 182 1782 73 HOH HOH . C 3 HOH A 183 1783 170 HOH HOH . C 3 HOH A 184 1784 196 HOH HOH . C 3 HOH A 185 1785 148 HOH HOH . C 3 HOH A 186 1786 201 HOH HOH . C 3 HOH A 187 1787 192 HOH HOH . C 3 HOH A 188 1788 111 HOH HOH . C 3 HOH A 189 1789 200 HOH HOH . C 3 HOH A 190 1790 189 HOH HOH . C 3 HOH A 191 1791 97 HOH HOH . C 3 HOH A 192 1792 87 HOH HOH . C 3 HOH A 193 1793 203 HOH HOH . C 3 HOH A 194 1794 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 Y0D . . . B 2 -16.022 17.217 25.975 0.31 16.42 ? N1 Y0D 1501 A 1 HETATM 2 N N3 Y0D . . . B 2 -19.144 13.266 25.58 0.31 14.46 ? N3 Y0D 1501 A 1 HETATM 3 C C4 Y0D . . . B 2 -13.827 20.263 25.378 0.31 17.27 ? C4 Y0D 1501 A 1 HETATM 4 C C5 Y0D . . . B 2 -14.391 19.54 24.202 0.31 17.21 ? C5 Y0D 1501 A 1 HETATM 5 C C6 Y0D . . . B 2 -18.276 14.668 27.36 0.31 15.12 ? C6 Y0D 1501 A 1 HETATM 6 C C7 Y0D . . . B 2 -18.508 13.246 26.897 0.31 14.71 ? C7 Y0D 1501 A 1 HETATM 7 C C8 Y0D . . . B 2 -20.234 12.606 25.188 0.31 13.88 ? C8 Y0D 1501 A 1 HETATM 8 C C10 Y0D . . . B 2 -21.695 13.186 27.23 0.31 13.74 ? C10 Y0D 1501 A 1 HETATM 9 C C13 Y0D . . . B 2 -18.526 14.164 24.602 0.31 15.32 ? C13 Y0D 1501 A 1 HETATM 10 C C1 Y0D . . . B 2 -16.64 16.442 26.875 0.31 16.11 ? C1 Y0D 1501 A 1 HETATM 11 C C11 Y0D . . . B 2 -23.07 13.038 27.553 0.31 13.91 ? C11 Y0D 1501 A 1 HETATM 12 C C12 Y0D . . . B 2 -23.709 12.159 26.76 0.31 13.44 ? C12 Y0D 1501 A 1 HETATM 13 C C14 Y0D . . . B 2 -17.246 14.756 25.139 0.31 15.93 ? C14 Y0D 1501 A 1 HETATM 14 C C2 Y0D . . . B 2 -15.497 18.535 26.307 0.31 16.84 ? C2 Y0D 1501 A 1 HETATM 15 C C3 Y0D . . . B 2 -14.265 18.846 25.512 0.31 17.28 ? C3 Y0D 1501 A 1 HETATM 16 C C9 Y0D . . . B 2 -21.388 12.538 26.038 0.31 13.68 ? C9 Y0D 1501 A 1 HETATM 17 N N2 Y0D . . . B 2 -17.461 15.438 26.413 0.31 15.57 ? N2 Y0D 1501 A 1 HETATM 18 O O1 Y0D . . . B 2 -16.526 16.647 28.08 0.31 16.74 ? O1 Y0D 1501 A 1 HETATM 19 O O2 Y0D . . . B 2 -20.304 12.161 24.054 0.31 13.33 ? O2 Y0D 1501 A 1 HETATM 20 S S1 Y0D . . . B 2 -22.716 11.57 25.52 0.31 14.67 ? S1 Y0D 1501 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #